mRNA_H-canaliculatus_F_contig12776.2308.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12776.2308.1
Unique NamemRNA_H-canaliculatus_F_contig12776.2308.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A6H5KBR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR9_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 8.620e-49
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +EIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS
Sbjct:  953 KEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 1042
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 9.000e-49
Identity = 89/90 (98.89%), Postives = 90/90 (100.00%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +EIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS
Sbjct:  907 KEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 996
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A835YLJ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ6_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.390e-29
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRC--RGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +EI P+LPLLLTELSKL+  A++   + IL+ELCLTVP RLASLLPHLPLM+RLMV AL    RG+L GLALRTLEFWVDNL PDY   ++S
Sbjct:  185 KEILPILPLLLTELSKLYSTAQDDLTRAILIELCLTVPVRLASLLPHLPLMLRLMVRALSAQQRGELHGLALRTLEFWVDNLMPDYCCAVLS 276
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A1V9ZBZ5_9STRA (Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBZ5_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.360e-22
Identity = 50/90 (55.56%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +E+ PLLP LL+ L +L    ++ S++++L+ELCLT+PARL+SLL +LP +MR +V A+  RG+L  L LRTLE+WVDNLNPD+LY IM+
Sbjct:  811 KEVLPLLPGLLSALMRLQKHIKKPSLQDVLLELCLTIPARLSSLLQYLPSLMRSVVQAMLSRGELANLGLRTLEYWVDNLNPDFLYPIMT 900
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A1V9ZEG8_9STRA (Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZEG8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-22
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +E+ PLLP LL+ L +L    ++ S++++L+ELCLT+PARL+SLL +LP +MR +V A+  +G+L  L LRTLE+WVDNLNPD+LY IM+
Sbjct:  828 KEVLPLLPGLLSALMRLQQHIQKPSLQDVLLELCLTIPARLSSLLQYLPSLMRSVVQAMLSKGELANLGLRTLEYWVDNLNPDFLYPIMT 917
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A2D4BSY4_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSY4_PYTIN)

HSP 1 Score: 99.8 bits (247), Expect = 1.860e-22
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +E++PLLP +L+ L +L  + +  S++++ +ELCLT+PARL+SLL +LP +MR +V A+  RG+L  L LRTLEFWVDNLNPD+LY IM+
Sbjct:  910 KEVFPLLPGVLSALMRLQRQLQHASMQDVXLELCLTIPARLSSLLQYLPSLMRCVVRAIISRGELAFLGLRTLEFWVDNLNPDFLYPIMT 999
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A7S2EPR7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EPR7_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 2.370e-22
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    4 EIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCR-GDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            E+ PLLP +L  L +++   E+ +++  ++ELCLTVPARL+SLLPHL L++R+++ AL+   GDL  L LRTLEFWVDNLNPD+LY I++
Sbjct:    1 ELLPLLPTILNGLYRIYLATEDRALRFAIIELCLTVPARLSSLLPHLSLLLRIIIPALQSNNGDLVNLGLRTLEFWVDNLNPDFLYPILA 90
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A6G0X4R5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4R5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.430e-22
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            QE+ PLLP LL+ L +L    ++ S++ +L+ELCLT+PARL+SLL +LP +M+ +V A+  +G+L  L LRTLE+WVDNLNPD+LY IM+
Sbjct:  867 QEVLPLLPGLLSALMRLQKHIQKPSMQEVLLELCLTIPARLSSLLQYLPSLMKSVVQAILSKGELANLGLRTLEYWVDNLNPDFLYPIMT 956
[Close]
BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A6G0X4V8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4V8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.460e-22
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            QE+ PLLP LL+ L +L    ++ S++ +L+ELCLT+PARL+SLL +LP +M+ +V A+  +G+L  L LRTLE+WVDNLNPD+LY IM+
Sbjct:  867 QEVLPLLPGLLSALMRLQKHIQKPSMQEVLLELCLTIPARLSSLLQYLPSLMKSVVQAILSKGELANLGLRTLEYWVDNLNPDFLYPIMT 956
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BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Match: A0A5D6XXH6_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.460e-22
Identity = 49/90 (54.44%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPLMMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS 270
            +E++PLLP +L+ L +L     ++S++++L+ELCLT+PARL+SLL +LP +M+ +V A+  RG+L  L LRTLEFWVDNLNPD+LY IM+
Sbjct:  903 KEVFPLLPGVLSALMRLQKHIGKLSMQDVLLELCLTIPARLSSLLQYLPSLMKSVVRAILSRGELAYLGLRTLEFWVDNLNPDFLYPIMT 992
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12776.2308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBR9_9PHAE8.620e-4998.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFI6_ECTSI9.000e-4998.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YLJ6_9STRA3.390e-2968.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9ZBZ5_9STRA1.360e-2255.56Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Thrau... [more]
A0A1V9ZEG8_9STRA1.860e-2254.44Phosphatidylinositol kinase (PIK-L3) n=1 Tax=Achly... [more]
A0A2D4BSY4_PYTIN1.860e-2254.44Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S2EPR7_9STRA2.370e-2254.44Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A6G0X4R5_9STRA3.430e-2254.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6G0X4V8_9STRA3.460e-2254.44Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6XXH6_9STRA3.460e-2254.44Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12776contigH-canaliculatus_F_contig12776:2327..2596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue7.8e-42
Seed eggNOG ortholog2880.D8LFI6
KEGG koko:K08874
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928998.5427969-CDS-H-canaliculatus_F_contig12776:2326..25961622928998.5427969-CDS-H-canaliculatus_F_contig12776:2326..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12776 2327..2596 -
1696845644.1908255-CDS-H-canaliculatus_F_contig12776:2326..25961696845644.1908255-CDS-H-canaliculatus_F_contig12776:2326..2596Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12776 2327..2596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12776.2308.1prot_H-canaliculatus_F_contig12776.2308.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12776 2327..2596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12776.2308.1

>prot_H-canaliculatus_F_contig12776.2308.1 ID=prot_H-canaliculatus_F_contig12776.2308.1|Name=mRNA_H-canaliculatus_F_contig12776.2308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
QEIYPLLPLLLTELSKLHHRAEEVSIKNILVELCLTVPARLASLLPHLPL
MMRLMVHALRCRGDLDGLALRTLEFWVDNLNPDYLYRIMS
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mRNA from alignment at H-canaliculatus_F_contig12776:2327..2596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12776.2308.1 ID=mRNA_H-canaliculatus_F_contig12776.2308.1|Name=mRNA_H-canaliculatus_F_contig12776.2308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=270bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12776:2327..2596- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAATTTACCCGCTCCTCCCGCTGCTGCTGACGGAGCTGAGCAAGCT
CCACCACCGCGCGGAGGAGGTTTCGATCAAGAACATCCTGGTGGAGCTGT
GCCTGACGGTGCCGGCCAGGCTCGCCTCTCTGCTGCCCCACCTGCCCCTC
ATGATGAGGCTCATGGTGCACGCGCTAAGGTGCAGAGGCGACCTGGACGG
GCTCGCGCTGCGGACGCTCGAGTTCTGGGTGGACAACCTCAACCCGGACT
ACCTGTACAGGATCATGAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12776:2327..2596-

>mRNA_H-canaliculatus_F_contig12776.2308.1 ID=mRNA_H-canaliculatus_F_contig12776.2308.1|Name=mRNA_H-canaliculatus_F_contig12776.2308.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12776:2327..2596- (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAATTTACCCGCTCCTCCCGCTGCTGCTGACGGAGCTGAGCAAGCT
CCACCACCGCGCGGAGGAGGTTTCGATCAAGAACATCCTGGTGGAGCTGT
GCCTGACGGTGCCGGCCAGGCTCGCCTCTCTGCTGCCCCACCTGCCCCTC
ATGATGAGGCTCATGGTGCACGCGCTAAGGTGCAGAGGCGACCTGGACGG
GCTCGCGCTGCGGACGCTCGAGTTCTGGGTGGACAACCTCAACCCGGACT
ACCTGTACAGGATCATGAGCCAGGAAATTTACCCGCTCCTCCCGCTGCTG
CTGACGGAGCTGAGCAAGCTCCACCACCGCGCGGAGGAGGTTTCGATCAA
GAACATCCTGGTGGAGCTGTGCCTGACGGTGCCGGCCAGGCTCGCCTCTC
TGCTGCCCCACCTGCCCCTCATGATGAGGCTCATGGTGCACGCGCTAAGG
TGCAGAGGCGACCTGGACGGGCTCGCGCTGCGGACGCTCGAGTTCTGGGT
GGACAACCTCAACCCGGACTACCTGTACAGGATCATGAGC
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