mRNA_H-canaliculatus_F_contig1277.2303.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1277.2303.1
Unique NamemRNA_H-canaliculatus_F_contig1277.2303.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1277.2303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1277contigH-canaliculatus_F_contig1277:7696..12663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_003650.1
Exons3
Model size2019
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1277.2303.1prot_H-canaliculatus_F_contig1277.2303.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1277 9524..10441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.9608395-UTR-H-canaliculatus_F_contig1277:7695..77821622928997.9608395-UTR-H-canaliculatus_F_contig1277:7695..7782Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 7696..7782 -
1696845643.9525213-UTR-H-canaliculatus_F_contig1277:7695..77821696845643.9525213-UTR-H-canaliculatus_F_contig1277:7695..7782Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 7696..7782 -
1622928997.9763463-UTR-H-canaliculatus_F_contig1277:9503..95231622928997.9763463-UTR-H-canaliculatus_F_contig1277:9503..9523Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 9504..9523 -
1696845643.9624681-UTR-H-canaliculatus_F_contig1277:9503..95231696845643.9624681-UTR-H-canaliculatus_F_contig1277:9503..9523Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 9504..9523 -
1622928998.010084-UTR-H-canaliculatus_F_contig1277:10441..104781622928998.010084-UTR-H-canaliculatus_F_contig1277:10441..10478Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 10442..10478 -
1696845643.9789019-UTR-H-canaliculatus_F_contig1277:10441..104781696845643.9789019-UTR-H-canaliculatus_F_contig1277:10441..10478Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 10442..10478 -
1622928998.025993-UTR-H-canaliculatus_F_contig1277:11706..126631622928998.025993-UTR-H-canaliculatus_F_contig1277:11706..12663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 11707..12663 -
1696845643.9882815-UTR-H-canaliculatus_F_contig1277:11706..126631696845643.9882815-UTR-H-canaliculatus_F_contig1277:11706..12663Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1277 11707..12663 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.9941952-CDS-H-canaliculatus_F_contig1277:9523..104411622928997.9941952-CDS-H-canaliculatus_F_contig1277:9523..10441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1277 9524..10441 -
1696845643.970468-CDS-H-canaliculatus_F_contig1277:9523..104411696845643.970468-CDS-H-canaliculatus_F_contig1277:9523..10441Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1277 9524..10441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1277.2303.1

>prot_H-canaliculatus_F_contig1277.2303.1 ID=prot_H-canaliculatus_F_contig1277.2303.1|Name=mRNA_H-canaliculatus_F_contig1277.2303.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=306bp
MMAPLHGGGGGSATAGNARRRSSRSNNGGISASPLPWPPYTMMKWAVVTG
MAVVSTMTMVVLFYHHGMVEPTAHHLAMWGTNHPHGKNQFAGVHASGRSL
GAGVSRTGAAPGNLNVVTSSSTSTTAIFHQRLRGSYTGQPAGTAATTTGV
GASWRRSAAKTSVERESRHSDNTSTKKPLPRPPSRDGDDAGDAGDTRGSK
ESKIEVGKKAPAEGPLAAANEAVIAQQSLMAIVAASRELEERERLGEELL
AHQNHLGKILGGREKEEAEIFDAVADHAAAAAAAAEGISIQEARGGRRPQ
PLARG*
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mRNA from alignment at H-canaliculatus_F_contig1277:7696..12663-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1277.2303.1 ID=mRNA_H-canaliculatus_F_contig1277.2303.1|Name=mRNA_H-canaliculatus_F_contig1277.2303.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4968bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1277:7696..12663- (Hapterophycus canaliculatus Oshoro5f female)
CTGTACCCCCGGTCCGCGAGATTGGATGTTGAATCACATTGGAGGATACT
AGCAAGATAAGAACAAACGGTGGAGCGGAGCAATATGTAACAAACACCAA
CAATAGGAAACGTTCGCCGAAACTGCGGATGACATTCATTCCACCTCGTC
TAGAAAGAGAGCGTCATGCAGCTGGGGCGCAGTACTCGAGGATGTCGTAG
GGTGCCGCCTGTGCAGATGTAACCGTCCTCGTAATTTCCGACCTTTGTAC
GGAGTAGATACGAACTCTAAGCTCGTCCAAGATTACAAATTACTCAGGGG
GGAGGTCAACAGTTTTTCGTACAACATGCCCACAGAATAATTGGATTACA
AGAAGGGATGCCCTTGTCTCTCACGGCGATGTGATAAATCAAATCAGCGA
AACACATTGGGTCCCCCGGCTTTACTTCAGCGTTGGTGTAACCTGCGCTC
TTCGCCGCGCAAACGTACTTTCCGCTCTCCACCTCGAAAATGTCAATACC
AAGTCTACAGGTTTGTTCTTGGGAGTTGCTTTCAAAAAGACCCTAAACCA
GTCAAGGTTCAACCGTTTCGACCGGTCTGATGGAAAATTGAAATTCCATC
TCCGGCGAGCCTGATTCCTGATTCCTCCTCTGTCCTGGGCGTAAATGCTG
CGTCCCGTCGGCCAGGCAATGCGTCATTTTCTGTTTCTCTTGGTATTTCC
GTTCGTCACGCACCAGAGATACTGAGGCACAGGGTCCTGACGATTCGCAT
ATTTGACGCTGGCTGTGCACGTTCCCGCTGACACCCCCCCTCTACTTCCT
ACCACCACCTTTTTCAGCGCGTCGCCAAAGTGGGAGACGAGGCAACGAGT
TGCCAAGAGTAAGCAGAATACTGAACGGGCAGCTCGGCACGAACGTTCCT
CAATCCTATCTGCTCGACATTCTTGCCCTAGGACCAGGCGGAGGGGGGCA
CGGAGAGGTGAGAGAAATGGCACCTTCCTTGTCAAAGTGATGTCGGTATG
TACTTCATAGTTCCCTATGGACCGTGTTCTACAGATCATGAGAGGGGGAA
GGGATAAGAAGGGCTTCGTCCGACGGCTACTTCGAGCCCGCGACGATCAC
TGAAGTGTCGAGCCTCCAGAGAGCAAGCCACGACCGGGCATGGTCGAGTT
TTTCTCGAGTGCCCTATGATGTAAAGTAGTTCGCGTGCGTGCGAGGCTGT
GCCTGATCCCTACGCTGCTATGAGCAGCTACGCTCATTTGCAGCTTGTTT
GCGAGAAACGCTTGCCTTGCACTTCGTTTACCCGGCGCGAGAACAAGCGG
GGGCAGAGTTGGGCACGGGTCGGAGCGGAGTCACACAACGCGTTACAGCA
ATCGTCAAGCCGATGCATCGACCGATAGATCGATCGATCGGGAGGAAGAA
GCGATGAGCGGCGTGCTGTTCGTTCACCACTTGAGTCCGCCGCCAAGAAA
AAATATCGAGCTGCTCATTGCAGTCGTGTATCATCGGGCAAGCTGACCCA
ATCGCGCGACAAACAGATGTAACAAAACGGCAGCACCGCCGTTCAACCAC
GACGGCTTTTACCGATGAAAAGAGGACACGCGGTCGCCGCCCCGCCAGCG
GGCCGGTAGCAGCGGAGCGCCTCGTGAACGTCTCACCGTCGGCGAAGGCG
CCTGAACAAAGGCCTCACCGGCGGCGAAAGCGCCTAAATGAGGCTTGGTG
GGAAAACATTGACCCCGCGGCCACCTTGCAGCTACAGTACTGCGAACCGT
TTCGTTGCATTTGGTGCGGACTGTTGCTGCTTGCCCCCCGCACCGATCGC
GTGGCGAACCGTTTTCGGACGCGAACGTTTTAGGGGCTATCTCCTCTTGG
GTAGACACGATAGTGTGGCACAGCAGTCAGCGAGCTCGGGTGAGGCCCGA
CAAGCACAGCCCTCGGAACCAACCAGACTTTCTCGAGCTCGAGCCAGAGC
GGGGCGCTGTCCGCAAGCATCCCCGGATCGGGCAGCGGCACGAACAAAAA
GCACTCTCGTCGCAAAAAAACGAAGATCCAGTTGCTGTACGAGTAGAAGT
AATGTGGATACCGCCCTTCGCTTGCCTGTGCGCATCCGTATACGTACGCC
TGTGTGCCGCACGCCCACGTCCACACGCGCCTCGCGCTCGCCCTCGCCAC
GTCTGACAAACATCCCTGCGTTCGCTCTTTTCCAGACGAGGGCAGGACAC
CCTGAGAACGTCGTCTGCGGGCATGATGGCACCTCTCCACGGCGGCGGCG
GCGGCAGCGCGACCGCCGGCAACGCGAGGAGGAGGTCATCCAGGAGCAAC
AACGGAGGCATAAGTGCATCGCCCCTGCCATGGCCACCGTACACCATGAT
GAAATGGGCGGTTGTGACAGGGATGGCGGTGGTTTCGACCATGACCATGG
TCGTCTTGTTCTACCATCACGGAATGGTTGAACCTACTGCCCACCACCTG
GCGATGTGGGGCACTAATCATCCTCACGGGAAGAACCAGTTTGCAGGGGT
GCACGCTTCTGGACGCAGTCTCGGTGCCGGTGTCTCTCGTACTGGTGCTG
CTCCAGGCAACCTCAACGTGGTCACGTCCTCGTCGACGTCTACGACGGCG
ATCTTCCATCAACGTCTCCGCGGGTCCTACACCGGACAACCGGCGGGGAC
GGCGGCGACGACGACGGGAGTAGGGGCGTCCTGGCGCCGCAGCGCTGCCA
AAACCAGCGTGGAACGCGAAAGCAGACACAGCGACAACACCAGCACCAAG
AAGCCGCTACCACGGCCACCGTCGCGCGATGGGGATGACGCTGGCGATGC
TGGCGACACTCGGGGCAGCAAAGAGAGCAAGATCGAGGTGGGGAAGAAGG
CCCCGGCCGAAGGGCCGTTGGCGGCGGCAAACGAGGCGGTCATCGCCCAG
CAATCGTTGATGGCGATAGTGGCGGCGTCACGGGAGCTGGAGGAGAGAGA
GCGCCTCGGGGAGGAGCTCCTCGCGCACCAGAACCACCTAGGCAAGATAC
TCGGTGGTCGAGAGAAGGAGGAAGCCGAGATTTTCGACGCGGTTGCCGAC
CACGCCGCCGCCGCTGCCGCCGCCGCGGAAGGAATCAGTATCCAGGAGGC
CCGAGGGGGCAGGAGGCCGCAGCCATTAGCCAGAGGATGAGAGGAGGATA
TGGTCGAAGGGTGAGTTACTTCTCTAACGCCCTCGACGGCGTCGAGAAGG
CTAAGAGCTATGCACATCGGGGGGGGCGCTGCTGAGGGGAAGGCCATAAT
TTACTCATGTAGGCACAGAAGAATCCTCGTCGTCCTGCGTGTGTCTTACC
ACGTTCTGAAAAATTGGCGGGAAGAGCGAAGGCGTCTCGTGATCGCGCAT
GCGTACCTGTAGACGCAAGGATGACGATATCCTCTGCGTTGCTCCATCTG
AAGATCGTTTCGCCGGGAGTAGCCAAGGGTAAAACCTCGCCGCTGTGCGT
GGAGTGCCCACCCACGCTGTTGTAGTGCTTGAGAAATCTTACGCGGGGTA
ATTCTCCGGAAATAGCAGAAAACAAGCAAAGGCTTGCACAACGCCTCGCC
TTGCAGTGAGGCGCTCGGGGGAAAGTGTTGAGCGCGAATGCGCAAAAGAG
GTGAGCACCTTTCCTTTTGAAATAGATACGTGAAGCATCGGCTCAAGATC
TCTCGCGTTATGAAGCATTCCCGAGACTGGCGCATGTTCTCCCCTCAAGG
AAACGGCATCACGTGGCCTCTGCCCTGACTACGTGCTGCTTCTACTCACC
TGTGGATTAGTTCTGTCGCCTACATTTCACACATTTTTCTGCCGACATCA
CCACCTATCTCTTCCAGGTCCAAAAGATGGTGGGTTGAGAGAAATGTGGC
GTGTCAGATCTTTCTCATAAAACAAGTCAACAACACCGAAGTAATACCCA
CCTGAGACACTGTCCATCTCAAGGGGCATTCGTTAATTCCATTCAGTGAG
GGTTCCATTCGAGTGACAGGATGAAACTATGTATCAGTAGGCAAGTTGTT
GACAAAAAACCTTTTGATTACCTGTCATGTCGCCGATCGTCGGGACAAAC
ACATGAGCTCAAAGGATGTGGTCATTTTGGAATATCGAAGACAAGCGCTA
GAAAGTCTGATATACAATAGGAAGCCAATGTACTGTCGGACACGCTTCGC
AAGAGACGAAATTATTCTCGTCAGATCCGCAATCGCAATGGATATGTCGA
GATACCTTAATTTGATGTTCCCAAGAATTACGTTGTTTCCACGTTGTGTT
CCGTCTGATTATTTTCACCCGGAAAGGTGGAGATGATCAATGTTTACGGA
CGTTCGCGTGCGCTTTGATGAGAGGCGAAATCACGTCATCATTAATTCAC
TCTATCTTTTTGGAGAGAGGAATCAGTTGAAGGCCGCTTGATTTCCGATC
AGGCCGCTTGATTTCCAATCGACGCTGAATCTGGTCCGGATTTAGTCACA
TCTGAAGGTGAAACCATGATACACGTAGCGGGAGCACATCAGAGTGGACG
GGCAGACAAACCACGAAAACGGGAAACTCCAACAAGTCGCGTTCACACTT
TTTCGTTCAAGATACCGTTTTCCTCGTCGCCGTCGTCGCCGTCGTCGCCG
TCGTCGTCGGGGCCGTTAGTATCGCTTCATGGGATAGCACGCTGCGCGTG
TATGTGCGAAGTCACCCTGCCCTCTACTCATACCGGCGGGGACAACGACC
GCACCCGAAACAATTCAAGAGCCCCGTTGACGAACCGTCGTTGGCGACGA
GAAGCTCAACGCCACACCCCCAGACACACCTCGACACGTGAACACAAAAG
CATCGACGTACGTACGTGATACATCTGAACCGACACCCTTCTCTCTCGCC
CGCGCCCGACCACGGTGTGTCTCTGTTCCAGAGTGTCAAGAGGAGAGGTT
GAGGCAAGCCATCATCGGCGCCGTCCCCATCGCTAGAGGGAAAACGCCTT
CAACTCCTGCCATGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1277:7696..12663-

>mRNA_H-canaliculatus_F_contig1277.2303.1 ID=mRNA_H-canaliculatus_F_contig1277.2303.1|Name=mRNA_H-canaliculatus_F_contig1277.2303.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1836bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1277:7696..12663- (Hapterophycus canaliculatus Oshoro5f female)
ATGATGGCACCTCTCCACGGCGGCGGCGGCGGCAGCGCGACCGCCGGCAA
CGCGAGGAGGAGGTCATCCAGGAGCAACAACGGAGGCATAAGTGCATCGC
CCCTGCCATGGCCACCGTACACCATGATGAAATGGGCGGTTGTGACAGGG
ATGGCGGTGGTTTCGACCATGACCATGGTCGTCTTGTTCTACCATCACGG
AATGGTTGAACCTACTGCCCACCACCTGGCGATGTGGGGCACTAATCATC
CTCACGGGAAGAACCAGTTTGCAGGGGTGCACGCTTCTGGACGCAGTCTC
GGTGCCGGTGTCTCTCGTACTGGTGCTGCTCCAGGCAACCTCAACGTGGT
CACGTCCTCGTCGACGTCTACGACGGCGATCTTCCATCAACGTCTCCGCG
GGTCCTACACCGGACAACCGGCGGGGACGGCGGCGACGACGACGGGAGTA
GGGGCGTCCTGGCGCCGCAGCGCTGCCAAAACCAGCGTGGAACGCGAAAG
CAGACACAGCGACAACACCAGCACCAAGAAGCCGCTACCACGGCCACCGT
CGCGCGATGGGGATGACGCTGGCGATGCTGGCGACACTCGGGGCAGCAAA
GAGAGCAAGATCGAGGTGGGGAAGAAGGCCCCGGCCGAAGGGCCGTTGGC
GGCGGCAAACGAGGCGGTCATCGCCCAGCAATCGTTGATGGCGATAGTGG
CGGCGTCACGGGAGCTGGAGGAGAGAGAGCGCCTCGGGGAGGAGCTCCTC
GCGCACCAGAACCACCTAGGCAAGATACTCGGTGGTCGAGAGAAGGAGGA
AGCCGAGATTTTCGACGCGGTTGCCGACCACGCCGCCGCCGCTGCCGCCG
CCGCGGAAGGAATCAGTATCCAGGAGGCCCGAGGGGGCAGGAGGCCGCAG
CCATTAGCCAGAGGATGAATGATGGCACCTCTCCACGGCGGCGGCGGCGG
CAGCGCGACCGCCGGCAACGCGAGGAGGAGGTCATCCAGGAGCAACAACG
GAGGCATAAGTGCATCGCCCCTGCCATGGCCACCGTACACCATGATGAAA
TGGGCGGTTGTGACAGGGATGGCGGTGGTTTCGACCATGACCATGGTCGT
CTTGTTCTACCATCACGGAATGGTTGAACCTACTGCCCACCACCTGGCGA
TGTGGGGCACTAATCATCCTCACGGGAAGAACCAGTTTGCAGGGGTGCAC
GCTTCTGGACGCAGTCTCGGTGCCGGTGTCTCTCGTACTGGTGCTGCTCC
AGGCAACCTCAACGTGGTCACGTCCTCGTCGACGTCTACGACGGCGATCT
TCCATCAACGTCTCCGCGGGTCCTACACCGGACAACCGGCGGGGACGGCG
GCGACGACGACGGGAGTAGGGGCGTCCTGGCGCCGCAGCGCTGCCAAAAC
CAGCGTGGAACGCGAAAGCAGACACAGCGACAACACCAGCACCAAGAAGC
CGCTACCACGGCCACCGTCGCGCGATGGGGATGACGCTGGCGATGCTGGC
GACACTCGGGGCAGCAAAGAGAGCAAGATCGAGGTGGGGAAGAAGGCCCC
GGCCGAAGGGCCGTTGGCGGCGGCAAACGAGGCGGTCATCGCCCAGCAAT
CGTTGATGGCGATAGTGGCGGCGTCACGGGAGCTGGAGGAGAGAGAGCGC
CTCGGGGAGGAGCTCCTCGCGCACCAGAACCACCTAGGCAAGATACTCGG
TGGTCGAGAGAAGGAGGAAGCCGAGATTTTCGACGCGGTTGCCGACCACG
CCGCCGCCGCTGCCGCCGCCGCGGAAGGAATCAGTATCCAGGAGGCCCGA
GGGGGCAGGAGGCCGCAGCCATTAGCCAGAGGATGA
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