mRNA_H-canaliculatus_F_contig12765.2301.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12765.2301.1
Unique NamemRNA_H-canaliculatus_F_contig12765.2301.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12765.2301.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12765contigH-canaliculatus_F_contig12765:188..2956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2771
Cds size2769
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.8331933-CDS-H-canaliculatus_F_contig12765:187..29561622928997.8331933-CDS-H-canaliculatus_F_contig12765:187..2956Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12765 188..2956 +
1696845643.9243436-CDS-H-canaliculatus_F_contig12765:187..29561696845643.9243436-CDS-H-canaliculatus_F_contig12765:187..2956Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12765 188..2956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12765.2301.1prot_H-canaliculatus_F_contig12765.2301.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12765 188..2956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12765.2301.1

>prot_H-canaliculatus_F_contig12765.2301.1 ID=prot_H-canaliculatus_F_contig12765.2301.1|Name=mRNA_H-canaliculatus_F_contig12765.2301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=923bp
STKSLGLTRSAMADELKERNDELQRELEVTRRALLEKDSMFEEFKKKSAL
REDDRAERAAGRGTPTGRRSEREGRGSSRDSYRDGEDEEFRNNFSSSDSK
VLDMMAEVLKNAQGHHSVGRSGVQRMMPAVKYTGKHLDSQLEGRMFIGRM
DPVFREHGVADAIHSGVEVKVGITKRDVLIRHFDPKMVDEHQRAYDLLLG
SVEDAAINCRIQSIGSPSGAWEWIRRHFTPLPGTERMEAEHEWKHLKQKL
GEHPKDFFSRVALIMSNMEMFVRRIDEMEYKTVVLDALSSDFEFQKNTLS
DMDDVSRTKIESMIVKAQVRLERERMQSDGVGTGFALVAHGGNRGYGGGG
RGAGGNGPRMGPAGGRGFQHTSPHQSVTMQNGDWCDYHNTNLHSNSSCRH
QQQQQWEALQQQQQRTSGFGRGHQQQLPPRARQQADNGGSAQRYGVTGGG
ARAGVTRQHTPGYINPKSLPSYAPPPGGYDYSSYPPNLPRPSGNEPPIHQ
ADPRQACHECNQLGHMHQFCPARAHILGDSHARAPNPLVTAPRSHSYGAF
IAQPTCENIGTASTLPSYDSNGQLLPSDPQQQQQQQEECQQQQQEHQQLG
GAEEFVELLPRHQVQQQLLQPQQYLAHTMSSADPTSRSPAPFNIGSALMT
QFVPPDGKVENGYLVDGEIGGVALVSQKGTASVRAPLEDGELWISDSGST
YHTTGDPRLMYDMREITAEESRIAIGDGRALNVIGMGSLDLILHAKREFP
ITLRNVILVERMHFNLFSLHCGQETQTIILDREGVHMFDNALIFPRAHGH
CSLRANRVRSSSPLLALPAILPLPPSVPSAPDSGAPPDSGLPPSGASTAA
AGASGVVLPRSSHGIPPSAAAACDVVPSTSRAGVPPSTASASGVVPPRSS
DGFMPSAAAVCDVVPSTSRACVP
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mRNA from alignment at H-canaliculatus_F_contig12765:188..2956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12765.2301.1 ID=mRNA_H-canaliculatus_F_contig12765.2301.1|Name=mRNA_H-canaliculatus_F_contig12765.2301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2769bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12765:188..2956+ (Hapterophycus canaliculatus Oshoro5f female)
AGTACCAAGTCGCTTGGTTTAACGAGAAGCGCCATGGCTGACGAGCTAAA GGAGCGAAACGACGAACTTCAACGAGAACTCGAGGTAACGCGACGTGCCT TGTTAGAGAAGGATAGCATGTTCGAAGAGTTCAAGAAGAAGAGTGCCCTC CGCGAAGATGACCGAGCAGAACGAGCTGCTGGACGAGGGACCCCGACTGG ACGACGGTCGGAAAGAGAGGGTAGAGGGTCGAGTAGAGACTCTTACCGCG ATGGGGAGGACGAAGAATTTCGAAATAATTTTTCATCCTCTGACTCAAAG GTACTCGACATGATGGCTGAGGTGCTGAAAAATGCCCAAGGTCACCACTC TGTAGGGAGGAGTGGTGTGCAGAGAATGATGCCTGCCGTCAAGTACACCG GTAAACACCTGGACTCTCAGTTGGAGGGTAGAATGTTTATCGGGAGGATG GATCCCGTGTTTAGGGAGCATGGGGTGGCGGATGCCATTCATTCAGGGGT GGAGGTGAAGGTGGGAATCACGAAGAGAGATGTGTTGATTCGACATTTTG ATCCGAAGATGGTAGATGAGCACCAGCGTGCCTACGATCTCCTCCTTGGC AGCGTGGAAGATGCTGCAATCAACTGCCGTATACAGTCGATCGGCAGCCC GAGTGGGGCTTGGGAATGGATCCGCAGACATTTTACTCCCCTACCCGGAA CAGAAAGAATGGAGGCAGAGCACGAGTGGAAGCACTTAAAACAGAAACTG GGCGAGCACCCGAAAGATTTTTTTTCACGAGTGGCTTTAATCATGAGTAA CATGGAAATGTTCGTCAGGAGAATTGACGAGATGGAGTACAAGACAGTCG TATTGGACGCACTTTCCTCTGATTTTGAGTTTCAGAAAAACACATTGTCC GACATGGATGATGTTTCGCGCACCAAGATTGAGTCGATGATTGTCAAAGC GCAGGTTCGGCTCGAGAGGGAGCGGATGCAGAGTGACGGAGTGGGGACAG GCTTCGCTCTCGTGGCTCACGGTGGGAACCGTGGGTACGGGGGCGGAGGG CGAGGTGCAGGAGGGAATGGACCACGGATGGGACCCGCTGGAGGGAGGGG ATTTCAACATACGTCACCGCACCAGTCCGTGACCATGCAGAACGGCGATT GGTGCGACTACCACAACACGAACCTGCACAGCAACAGCTCCTGTCGCCAT CAACAACAGCAGCAGTGGGAGGCCCTGCAACAGCAACAACAACGGACATC AGGCTTCGGACGAGGTCACCAGCAGCAGCTGCCGCCGAGAGCACGCCAGC AGGCGGACAACGGTGGCTCAGCACAGAGGTATGGCGTAACGGGTGGTGGT GCTCGGGCGGGTGTGACTCGGCAACATACGCCCGGGTACATAAATCCAAA ATCTTTGCCGTCCTACGCCCCTCCTCCCGGCGGATATGACTACTCGAGCT ATCCGCCCAACCTGCCTCGTCCAAGCGGCAACGAGCCGCCCATTCACCAA GCAGACCCGCGTCAAGCGTGCCACGAGTGCAATCAGCTGGGGCACATGCA CCAGTTTTGTCCTGCTCGCGCGCACATCTTGGGCGATTCGCACGCACGAG CGCCGAACCCGCTCGTCACCGCCCCGCGATCACACTCATACGGCGCCTTC ATCGCGCAACCGACATGTGAAAACATCGGCACCGCAAGCACCCTTCCGTC GTACGACAGCAACGGTCAGTTGCTGCCGAGCGACCCGCAGCAGCAGCAGC AGCAGCAGGAAGAGTGCCAGCAACAACAGCAGGAGCATCAGCAGCTGGGG GGCGCAGAGGAGTTCGTGGAACTTCTCCCCCGGCATCAAGTTCAACAGCA GCTCCTACAGCCGCAGCAGTACCTCGCCCACACAATGTCTTCTGCCGACC CCACTTCACGATCTCCCGCTCCCTTCAACATTGGGTCAGCTCTAATGACT CAGTTTGTGCCACCTGACGGTAAGGTTGAAAACGGATATCTTGTGGACGG GGAGATTGGGGGTGTAGCATTGGTGTCTCAGAAAGGTACTGCGTCAGTGC GTGCTCCTCTTGAAGATGGGGAATTGTGGATTTCTGACAGTGGGAGCACG TACCACACCACGGGGGACCCTCGCCTCATGTACGACATGCGAGAGATAAC CGCGGAGGAGAGTCGAATCGCAATCGGCGATGGGAGAGCGTTAAACGTTA TCGGGATGGGAAGTCTGGACTTGATTTTGCATGCGAAAAGAGAGTTTCCG ATCACATTGAGGAACGTGATTTTGGTAGAGCGCATGCACTTCAACCTCTT TTCTCTGCATTGCGGGCAGGAGACTCAGACAATCATCCTTGACCGCGAAG GGGTGCACATGTTCGACAATGCGCTGATCTTCCCCCGCGCCCACGGCCAT TGTTCCCTGCGTGCGAACCGTGTGCGCAGCTCTTCCCCCCTCCTTGCCCT GCCGGCGATTTTGCCGCTGCCTCCGAGTGTCCCCTCCGCGCCCGATTCGG GCGCTCCCCCTGATTCAGGACTCCCACCATCGGGCGCCAGCACAGCGGCT GCCGGAGCGTCCGGTGTAGTACTTCCGCGTTCGAGTCACGGAATCCCGCC ATCGGCTGCTGCAGCTTGCGATGTGGTGCCTTCGACTTCACGTGCTGGTG TCCCGCCATCGACTGCATCCGCATCCGGTGTAGTACCTCCGCGTTCGAGT GACGGATTCATGCCATCGGCTGCTGCAGTTTGCGATGTGGTACCTTCAAC TTCACGTGCTTGTGTCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12765:188..2956+

>mRNA_H-canaliculatus_F_contig12765.2301.1 ID=mRNA_H-canaliculatus_F_contig12765.2301.1|Name=mRNA_H-canaliculatus_F_contig12765.2301.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5538bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12765:188..2956+ (Hapterophycus canaliculatus Oshoro5f female)
AGTACCAAGTCGCTTGGTTTAACGAGAAGCGCCATGGCTGACGAGCTAAA
GGAGCGAAACGACGAACTTCAACGAGAACTCGAGGTAACGCGACGTGCCT
TGTTAGAGAAGGATAGCATGTTCGAAGAGTTCAAGAAGAAGAGTGCCCTC
CGCGAAGATGACCGAGCAGAACGAGCTGCTGGACGAGGGACCCCGACTGG
ACGACGGTCGGAAAGAGAGGGTAGAGGGTCGAGTAGAGACTCTTACCGCG
ATGGGGAGGACGAAGAATTTCGAAATAATTTTTCATCCTCTGACTCAAAG
GTACTCGACATGATGGCTGAGGTGCTGAAAAATGCCCAAGGTCACCACTC
TGTAGGGAGGAGTGGTGTGCAGAGAATGATGCCTGCCGTCAAGTACACCG
GTAAACACCTGGACTCTCAGTTGGAGGGTAGAATGTTTATCGGGAGGATG
GATCCCGTGTTTAGGGAGCATGGGGTGGCGGATGCCATTCATTCAGGGGT
GGAGGTGAAGGTGGGAATCACGAAGAGAGATGTGTTGATTCGACATTTTG
ATCCGAAGATGGTAGATGAGCACCAGCGTGCCTACGATCTCCTCCTTGGC
AGCGTGGAAGATGCTGCAATCAACTGCCGTATACAGTCGATCGGCAGCCC
GAGTGGGGCTTGGGAATGGATCCGCAGACATTTTACTCCCCTACCCGGAA
CAGAAAGAATGGAGGCAGAGCACGAGTGGAAGCACTTAAAACAGAAACTG
GGCGAGCACCCGAAAGATTTTTTTTCACGAGTGGCTTTAATCATGAGTAA
CATGGAAATGTTCGTCAGGAGAATTGACGAGATGGAGTACAAGACAGTCG
TATTGGACGCACTTTCCTCTGATTTTGAGTTTCAGAAAAACACATTGTCC
GACATGGATGATGTTTCGCGCACCAAGATTGAGTCGATGATTGTCAAAGC
GCAGGTTCGGCTCGAGAGGGAGCGGATGCAGAGTGACGGAGTGGGGACAG
GCTTCGCTCTCGTGGCTCACGGTGGGAACCGTGGGTACGGGGGCGGAGGG
CGAGGTGCAGGAGGGAATGGACCACGGATGGGACCCGCTGGAGGGAGGGG
ATTTCAACATACGTCACCGCACCAGTCCGTGACCATGCAGAACGGCGATT
GGTGCGACTACCACAACACGAACCTGCACAGCAACAGCTCCTGTCGCCAT
CAACAACAGCAGCAGTGGGAGGCCCTGCAACAGCAACAACAACGGACATC
AGGCTTCGGACGAGGTCACCAGCAGCAGCTGCCGCCGAGAGCACGCCAGC
AGGCGGACAACGGTGGCTCAGCACAGAGGTATGGCGTAACGGGTGGTGGT
GCTCGGGCGGGTGTGACTCGGCAACATACGCCCGGGTACATAAATCCAAA
ATCTTTGCCGTCCTACGCCCCTCCTCCCGGCGGATATGACTACTCGAGCT
ATCCGCCCAACCTGCCTCGTCCAAGCGGCAACGAGCCGCCCATTCACCAA
GCAGACCCGCGTCAAGCGTGCCACGAGTGCAATCAGCTGGGGCACATGCA
CCAGTTTTGTCCTGCTCGCGCGCACATCTTGGGCGATTCGCACGCACGAG
CGCCGAACCCGCTCGTCACCGCCCCGCGATCACACTCATACGGCGCCTTC
ATCGCGCAACCGACATGTGAAAACATCGGCACCGCAAGCACCCTTCCGTC
GTACGACAGCAACGGTCAGTTGCTGCCGAGCGACCCGCAGCAGCAGCAGC
AGCAGCAGGAAGAGTGCCAGCAACAACAGCAGGAGCATCAGCAGCTGGGG
GGCGCAGAGGAGTTCGTGGAACTTCTCCCCCGGCATCAAGTTCAACAGCA
GCTCCTACAGCCGCAGCAGTACCTCGCCCACACAATGTCTTCTGCCGACC
CCACTTCACGATCTCCCGCTCCCTTCAACATTGGGTCAGCTCTAATGACT
CAGTTTGTGCCACCTGACGGTAAGGTTGAAAACGGATATCTTGTGGACGG
GGAGATTGGGGGTGTAGCATTGGTGTCTCAGAAAGGTACTGCGTCAGTGC
GTGCTCCTCTTGAAGATGGGGAATTGTGGATTTCTGACAGTGGGAGCACG
TACCACACCACGGGGGACCCTCGCCTCATGTACGACATGCGAGAGATAAC
CGCGGAGGAGAGTCGAATCGCAATCGGCGATGGGAGAGCGTTAAACGTTA
TCGGGATGGGAAGTCTGGACTTGATTTTGCATGCGAAAAGAGAGTTTCCG
ATCACATTGAGGAACGTGATTTTGGTAGAGCGCATGCACTTCAACCTCTT
TTCTCTGCATTGCGGGCAGGAGACTCAGACAATCATCCTTGACCGCGAAG
GGGTGCACATGTTCGACAATGCGCTGATCTTCCCCCGCGCCCACGGCCAT
TGTTCCCTGCGTGCGAACCGTGTGCGCAGCTCTTCCCCCCTCCTTGCCCT
GCCGGCGATTTTGCCGCTGCCTCCGAGTGTCCCCTCCGCGCCCGATTCGG
GCGCTCCCCCTGATTCAGGACTCCCACCATCGGGCGCCAGCACAGCGGCT
GCCGGAGCGTCCGGTGTAGTACTTCCGCGTTCGAGTCACGGAATCCCGCC
ATCGGCTGCTGCAGCTTGCGATGTGGTGCCTTCGACTTCACGTGCTGGTG
TCCCGCCATCGACTGCATCCGCATCCGGTGTAGTACCTCCGCGTTCGAGT
GACGGATTCATGCCATCGGCTGCTGCAGTTTGCGATGTGGTACCTTCAAC
TTCACGTGCTTGTGTCCCGAGTACCAAGTCGCTTGGTTTAACGAGAAGCG
CCATGGCTGACGAGCTAAAGGAGCGAAACGACGAACTTCAACGAGAACTC
GAGGTAACGCGACGTGCCTTGTTAGAGAAGGATAGCATGTTCGAAGAGTT
CAAGAAGAAGAGTGCCCTCCGCGAAGATGACCGAGCAGAACGAGCTGCTG
GACGAGGGACCCCGACTGGACGACGGTCGGAAAGAGAGGGTAGAGGGTCG
AGTAGAGACTCTTACCGCGATGGGGAGGACGAAGAATTTCGAAATAATTT
TTCATCCTCTGACTCAAAGGTACTCGACATGATGGCTGAGGTGCTGAAAA
ATGCCCAAGGTCACCACTCTGTAGGGAGGAGTGGTGTGCAGAGAATGATG
CCTGCCGTCAAGTACACCGGTAAACACCTGGACTCTCAGTTGGAGGGTAG
AATGTTTATCGGGAGGATGGATCCCGTGTTTAGGGAGCATGGGGTGGCGG
ATGCCATTCATTCAGGGGTGGAGGTGAAGGTGGGAATCACGAAGAGAGAT
GTGTTGATTCGACATTTTGATCCGAAGATGGTAGATGAGCACCAGCGTGC
CTACGATCTCCTCCTTGGCAGCGTGGAAGATGCTGCAATCAACTGCCGTA
TACAGTCGATCGGCAGCCCGAGTGGGGCTTGGGAATGGATCCGCAGACAT
TTTACTCCCCTACCCGGAACAGAAAGAATGGAGGCAGAGCACGAGTGGAA
GCACTTAAAACAGAAACTGGGCGAGCACCCGAAAGATTTTTTTTCACGAG
TGGCTTTAATCATGAGTAACATGGAAATGTTCGTCAGGAGAATTGACGAG
ATGGAGTACAAGACAGTCGTATTGGACGCACTTTCCTCTGATTTTGAGTT
TCAGAAAAACACATTGTCCGACATGGATGATGTTTCGCGCACCAAGATTG
AGTCGATGATTGTCAAAGCGCAGGTTCGGCTCGAGAGGGAGCGGATGCAG
AGTGACGGAGTGGGGACAGGCTTCGCTCTCGTGGCTCACGGTGGGAACCG
TGGGTACGGGGGCGGAGGGCGAGGTGCAGGAGGGAATGGACCACGGATGG
GACCCGCTGGAGGGAGGGGATTTCAACATACGTCACCGCACCAGTCCGTG
ACCATGCAGAACGGCGATTGGTGCGACTACCACAACACGAACCTGCACAG
CAACAGCTCCTGTCGCCATCAACAACAGCAGCAGTGGGAGGCCCTGCAAC
AGCAACAACAACGGACATCAGGCTTCGGACGAGGTCACCAGCAGCAGCTG
CCGCCGAGAGCACGCCAGCAGGCGGACAACGGTGGCTCAGCACAGAGGTA
TGGCGTAACGGGTGGTGGTGCTCGGGCGGGTGTGACTCGGCAACATACGC
CCGGGTACATAAATCCAAAATCTTTGCCGTCCTACGCCCCTCCTCCCGGC
GGATATGACTACTCGAGCTATCCGCCCAACCTGCCTCGTCCAAGCGGCAA
CGAGCCGCCCATTCACCAAGCAGACCCGCGTCAAGCGTGCCACGAGTGCA
ATCAGCTGGGGCACATGCACCAGTTTTGTCCTGCTCGCGCGCACATCTTG
GGCGATTCGCACGCACGAGCGCCGAACCCGCTCGTCACCGCCCCGCGATC
ACACTCATACGGCGCCTTCATCGCGCAACCGACATGTGAAAACATCGGCA
CCGCAAGCACCCTTCCGTCGTACGACAGCAACGGTCAGTTGCTGCCGAGC
GACCCGCAGCAGCAGCAGCAGCAGCAGGAAGAGTGCCAGCAACAACAGCA
GGAGCATCAGCAGCTGGGGGGCGCAGAGGAGTTCGTGGAACTTCTCCCCC
GGCATCAAGTTCAACAGCAGCTCCTACAGCCGCAGCAGTACCTCGCCCAC
ACAATGTCTTCTGCCGACCCCACTTCACGATCTCCCGCTCCCTTCAACAT
TGGGTCAGCTCTAATGACTCAGTTTGTGCCACCTGACGGTAAGGTTGAAA
ACGGATATCTTGTGGACGGGGAGATTGGGGGTGTAGCATTGGTGTCTCAG
AAAGGTACTGCGTCAGTGCGTGCTCCTCTTGAAGATGGGGAATTGTGGAT
TTCTGACAGTGGGAGCACGTACCACACCACGGGGGACCCTCGCCTCATGT
ACGACATGCGAGAGATAACCGCGGAGGAGAGTCGAATCGCAATCGGCGAT
GGGAGAGCGTTAAACGTTATCGGGATGGGAAGTCTGGACTTGATTTTGCA
TGCGAAAAGAGAGTTTCCGATCACATTGAGGAACGTGATTTTGGTAGAGC
GCATGCACTTCAACCTCTTTTCTCTGCATTGCGGGCAGGAGACTCAGACA
ATCATCCTTGACCGCGAAGGGGTGCACATGTTCGACAATGCGCTGATCTT
CCCCCGCGCCCACGGCCATTGTTCCCTGCGTGCGAACCGTGTGCGCAGCT
CTTCCCCCCTCCTTGCCCTGCCGGCGATTTTGCCGCTGCCTCCGAGTGTC
CCCTCCGCGCCCGATTCGGGCGCTCCCCCTGATTCAGGACTCCCACCATC
GGGCGCCAGCACAGCGGCTGCCGGAGCGTCCGGTGTAGTACTTCCGCGTT
CGAGTCACGGAATCCCGCCATCGGCTGCTGCAGCTTGCGATGTGGTGCCT
TCGACTTCACGTGCTGGTGTCCCGCCATCGACTGCATCCGCATCCGGTGT
AGTACCTCCGCGTTCGAGTGACGGATTCATGCCATCGGCTGCTGCAGTTT
GCGATGTGGTACCTTCAACTTCACGTGCTTGTGTCCCG
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