mRNA_H-canaliculatus_F_contig1276.2299.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1276.2299.1
Unique NamemRNA_H-canaliculatus_F_contig1276.2299.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: D7G9D3_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D3_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 6.400e-95
Identity = 142/148 (95.95%), Postives = 147/148 (99.32%), Query Frame = 2 
Query:  146 ASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQEG 589
            ++GGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATL GSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKY+QVC++KYQEG
Sbjct:    3 SAGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLCGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYRQVCKQKYQEG 150
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: A0A2R5GGQ9_9STRA (Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGQ9_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.120e-59
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 2 
Query:  143 MASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQE 586
            +ASG  VT+RLQQELM +M   D  A+AFP+ DNLF W+  ++G+ +T YEGL+YKL + FP  YPY AP I F TPCFHPNVD HGNICLDILKEKWS+ +SVSTIL SLRSLL+DPNN+SPLN  AAQLW +Q++YK+V  +KY E
Sbjct:    6 IASGESVTKRLQQELMQLMRDGDSNATAFPDGDNLFSWSGNINGAPETVYEGLSYKLHIDFPSNYPYTAPTIRFVTPCFHPNVDAHGNICLDILKEKWSATYSVSTILTSLRSLLSDPNNDSPLNGVAAQLWDNQEEYKRVLLKKYDE 153
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: I1HED7_BRADI (UBC core domain-containing protein n=11 Tax=Pooideae TaxID=147368 RepID=I1HED7_BRADI)

HSP 1 Score: 201 bits (512), Expect = 5.150e-58
Identity = 90/145 (62.07%), Postives = 114/145 (78.62%), Query Frame = 2 
Query:  146 ASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKY 580
            A G  V RRLQ ELM +MMG DPG SAFP  DN+F+W  T+ GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LWA+Q++++++ ++ Y
Sbjct:   34 ADGQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFQWVGTIDGSAATAYEGTSYRLALSFPSDYPYKPPKVKFETPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLY 178
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: A2ZRP5_ORYSJ (Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380 RepID=A2ZRP5_ORYSJ)

HSP 1 Score: 201 bits (512), Expect = 7.110e-58
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = 2 
Query:  146 ASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKY 580
            A G  V RRLQ ELM +MMG DPG SAFP  DN+F W  T++GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LW +QD+++++ ++ Y
Sbjct:   43 AEGQSVVRRLQSELMALMMGGDPGVSAFPEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWPNQDEFRKMVEKLY 187
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: A0A5J4Y1P3_9CHLO (Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y1P3_9CHLO)

HSP 1 Score: 200 bits (509), Expect = 1.130e-57
Identity = 90/157 (57.32%), Postives = 117/157 (74.52%), Query Frame = 2 
Query:  122 DAARYLKMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQEGQ 592
            D A+         VT+RLQ ELM +M   DPG SAFP+ D+LF W  T+ G+ DT YEG++YKL L FP  YP+KAP + FETPCFHPN+D++GNICLDILK+KWS+A+SV T+L S++SLL +PNN+SPLN+ AA+LW  Q+ YK+V  +KY E Q
Sbjct:   17 DTAKVTSTVDSHAVTKRLQSELMSLMSATDPGVSAFPDGDSLFSWVGTIQGAADTVYEGMSYKLSLKFPTDYPFKAPTVKFETPCFHPNIDQYGNICLDILKDKWSAAYSVRTVLLSIQSLLGEPNNDSPLNSYAAKLWESQEDYKRVLIKKYAEAQ 173
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: A0A0D9UZJ3_9ORYZ (UBC core domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9UZJ3_9ORYZ)

HSP 1 Score: 201 bits (511), Expect = 1.210e-57
Identity = 91/145 (62.76%), Postives = 113/145 (77.93%), Query Frame = 2 
Query:  161 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQEGQA 595
            V RRLQ ELM +MMG DPG SAFP  DN+F+W  T++GS  TAYEG +Y+L L FP  YPYK P + FETPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNNESPLNT+AA LW DQD+++++  + Y+   A
Sbjct:   53 VMRRLQSELMSLMMGGDPGISAFPEGDNIFQWVGTIAGSAATAYEGTSYRLSLAFPGEYPYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSVQSLLGEPNNESPLNTQAAALWPDQDEFRKMVHKLYKPAAA 197
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: A0A7S3B7L5_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B7L5_9VIRI)

HSP 1 Score: 201 bits (510), Expect = 2.050e-57
Identity = 94/148 (63.51%), Postives = 114/148 (77.03%), Query Frame = 2 
Query:  161 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQEGQAATK 604
            V++RLQ ELM +M G DPG SAFP  +NLF W  T+ GS  T YEGLT+KL+L FP+ YPYKAP +TFETPCFHPNVD+ GNICLDILKEKWSSA+ V T+L S++SLL +PNNESPLN  AA LWA+Q++YK V  +K  E +   K
Sbjct:   56 VSKRLQSELMKLMCGGDPGVSAFPEGNNLFSWVGTIVGSAGTVYEGLTFKLRLKFPNDYPYKAPQVTFETPCFHPNVDQFGNICLDILKEKWSSAYDVRTVLLSIQSLLGEPNNESPLNGYAATLWANQEEYKAVLHKKCAEAEGEKK 203
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: K3XMD9_SETIT (UBC core domain-containing protein n=21 Tax=Panicoideae TaxID=147369 RepID=K3XMD9_SETIT)

HSP 1 Score: 198 bits (504), Expect = 7.870e-57
Identity = 89/147 (60.54%), Postives = 115/147 (78.23%), Query Frame = 2 
Query:  140 KMASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKY 580
            K A G  V RRLQ ELM +MMG DPG SAFP+ DN+F W  T++GS  TAYEG +Y+L L F   YPYK P + F+TPCFHPNVD HGNICLDIL++KWSSA+ V TIL S++SLL +PNN+SPLNT+AA LWA+Q++++++ ++ Y
Sbjct:   32 KGAEGQSVVRRLQSELMALMMGGDPGVSAFPDGDNIFNWVGTIAGSAGTAYEGTSYRLALAFTAEYPYKPPKVRFDTPCFHPNVDTHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWANQEEFRKMVEKLY 178
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: C1MIV7_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MIV7_MICPC)

HSP 1 Score: 197 bits (502), Expect = 1.230e-56
Identity = 89/142 (62.68%), Postives = 112/142 (78.87%), Query Frame = 2 
Query:  161 VTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQE 586
            V RRLQ ELM +M  AD G SAFP+ DN+F W  T+ G+  TAYEGLTYKL L FP+ YP+KAP + FETPCFHPNVD+ GNICLDILKEKWS+ ++V TIL S++SLL +PNN SPLN +AAQ+W +Q +YK+V  +KY++
Sbjct:   31 VARRLQSELMSLMTSADAGISAFPDGDNIFNWVGTIEGAVGTAYEGLTYKLSLAFPNDYPFKAPTVKFETPCFHPNVDQFGNICLDILKEKWSAVYNVRTILLSIQSLLGEPNNASPLNAQAAQMWENQTEYKKVLHKKYKD 172
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BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Match: C1E006_MICCC (UBC core domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E006_MICCC)

HSP 1 Score: 197 bits (501), Expect = 1.720e-56
Identity = 88/148 (59.46%), Postives = 113/148 (76.35%), Query Frame = 2 
Query:  143 MASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAYEGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSSAFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQE 586
            ++    V RRLQ ELM +M  AD G SAFP+ DN+F W  T+ G+  T YEGLTYKL L FP+ YP+K+P + FETPCFHPNVD+ GNICLDILKEKWS+ ++V TIL S++SLL +PNN+SPLN +AAQLW +Q+ YK+   +KY+E
Sbjct:   25 VSDSASVARRLQSELMSLMTSADAGISAFPDGDNIFSWIGTIEGAAGTVYEGLTYKLSLAFPNDYPFKSPTVKFETPCFHPNVDQFGNICLDILKEKWSAVYNVRTILLSIQSLLGEPNNQSPLNAQAAQLWENQEDYKKTLHKKYRE 172
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1276.2299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9D3_ECTSI6.400e-9595.95UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A2R5GGQ9_9STRA3.120e-5964.86Ubiquitin-conjugating enzyme E2 C n=1 Tax=Hondaea ... [more]
I1HED7_BRADI5.150e-5862.07UBC core domain-containing protein n=11 Tax=Pooide... [more]
A2ZRP5_ORYSJ7.110e-5862.07Os01g0273100 protein n=11 Tax=Oryzeae TaxID=147380... [more]
A0A5J4Y1P3_9CHLO1.130e-5757.32Ubiquitin-conjugating enzyme E2 n=1 Tax=Trebouxia ... [more]
A0A0D9UZJ3_9ORYZ1.210e-5762.76UBC core domain-containing protein n=1 Tax=Leersia... [more]
A0A7S3B7L5_9VIRI2.050e-5763.51Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
K3XMD9_SETIT7.870e-5760.54UBC core domain-containing protein n=21 Tax=Panico... [more]
C1MIV7_MICPC1.230e-5662.68Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
C1E006_MICCC1.720e-5659.46UBC core domain-containing protein n=2 Tax=Micromo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1276contigH-canaliculatus_F_contig1276:7429..15153 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.5
Seed ortholog evalue1.8e-78
Seed eggNOG ortholog2880.D7G9D3
Preferred nameUBE2C
KEGG koko:K06674,ko:K06688,ko:K08707
KEGG Pathwayko04111,ko04120,map04111,map04120
GOsGO:0000151,GO:0000152,GO:0000209,GO:0000278,GO:0000280,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005680,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007096,GO:0007346,GO:0008150,GO:0008152,GO:0008283,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010458,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010948,GO:0010965,GO:0010992,GO:0010994,GO:0016020,GO:0016043,GO:0016567,GO:0016740,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022402,GO:0022607,GO:0030071,GO:0030163,GO:0031145,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031536,GO:0031625,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0042176,GO:0042592,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045930,GO:0045931,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051258,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0070979,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902426,GO:1902494,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903362,GO:1903364,GO:1903504,GO:1904666,GO:1904668,GO:1905818,GO:1905820,GO:1990234,GO:2001252
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0421@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-28_000490.1
Exons4
Model size1787
Cds size465
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1276.2299.1prot_H-canaliculatus_F_contig1276.2299.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1276 8609..15011 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3349388-UTR-H-canaliculatus_F_contig1276:7428..86081622928997.3349388-UTR-H-canaliculatus_F_contig1276:7428..8608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1276 7429..8608 -
1696845643.6662982-UTR-H-canaliculatus_F_contig1276:7428..86081696845643.6662982-UTR-H-canaliculatus_F_contig1276:7428..8608Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1276 7429..8608 -
1622928997.4621363-UTR-H-canaliculatus_F_contig1276:15011..151531622928997.4621363-UTR-H-canaliculatus_F_contig1276:15011..15153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1276 15012..15153 -
1696845643.7275627-UTR-H-canaliculatus_F_contig1276:15011..151531696845643.7275627-UTR-H-canaliculatus_F_contig1276:15011..15153Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1276 15012..15153 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.3874025-CDS-H-canaliculatus_F_contig1276:8608..87241622928997.3874025-CDS-H-canaliculatus_F_contig1276:8608..8724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 8609..8724 -
1696845643.679659-CDS-H-canaliculatus_F_contig1276:8608..87241696845643.679659-CDS-H-canaliculatus_F_contig1276:8608..8724Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 8609..8724 -
1622928997.399678-CDS-H-canaliculatus_F_contig1276:9405..96071622928997.399678-CDS-H-canaliculatus_F_contig1276:9405..9607Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 9406..9607 -
1696845643.6911771-CDS-H-canaliculatus_F_contig1276:9405..96071696845643.6911771-CDS-H-canaliculatus_F_contig1276:9405..9607Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 9406..9607 -
1622928997.4115849-CDS-H-canaliculatus_F_contig1276:13296..134141622928997.4115849-CDS-H-canaliculatus_F_contig1276:13296..13414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 13297..13414 -
1696845643.7035449-CDS-H-canaliculatus_F_contig1276:13296..134141696845643.7035449-CDS-H-canaliculatus_F_contig1276:13296..13414Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 13297..13414 -
1622928997.428783-CDS-H-canaliculatus_F_contig1276:14982..150111622928997.428783-CDS-H-canaliculatus_F_contig1276:14982..15011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 14983..15011 -
1696845643.7161598-CDS-H-canaliculatus_F_contig1276:14982..150111696845643.7161598-CDS-H-canaliculatus_F_contig1276:14982..15011Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1276 14983..15011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1276.2299.1

>prot_H-canaliculatus_F_contig1276.2299.1 ID=prot_H-canaliculatus_F_contig1276.2299.1|Name=mRNA_H-canaliculatus_F_contig1276.2299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
MASGGDVTRRLQQELMGIMMGADPGASAFPNDDNLFEWTATLSGSEDTAY
EGLTYKLKLVFPDTYPYKAPLITFETPCFHPNVDEHGNICLDILKEKWSS
AFSVSTILQSLRSLLADPNNESPLNTEAAQLWADQDKYKQVCQRKYQEGQ
AATK*
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mRNA from alignment at H-canaliculatus_F_contig1276:7429..15153-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1276.2299.1 ID=mRNA_H-canaliculatus_F_contig1276.2299.1|Name=mRNA_H-canaliculatus_F_contig1276.2299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7725bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1276:7429..15153- (Hapterophycus canaliculatus Oshoro5f female)
TACAGTACCACCACCACCTTTCTTCGCAAGAGATCGATACAGAGAGACAG
GGGGAAAGAGAAGAGAGGTGTCACTGGCGAGTACTTCCGCTAGGAGAGAG
AGAGGGAGCGAGACAGAGTCGGACGCCGCACGCTACCTCAAGATGGCCTC
TGGCGGAGATGTCACAAGAAGGTTAGTCTAGACCGTTCAAATGTGATGAG
GGCGGGGGTAAAAAACTGTAGTGTTTTAATCGGCAGGCTGCCCACGCCCA
AGGGTCGCGGAGTGGTTGACCGTGCGGCTGGTCGTCGTCACCTTGTGGGA
CTGCAGTGGATTCAGGAGAAGGTGGCTGGTTCGTGGCGGCTCTTTGCCGC
AAGTGCGTCTGCTGAGACGTGCGCTCGAAGATAGAAGCTCTACGGACAAG
GTCATCCTGAACCCTGTCTCAAAGTCCTCAGTTTTGGCGCGAACGGGAAT
TCTTTGTCCAAACCTTAACAACGTGCGGCCTGTTTTTGCAGCTGCCGCTA
CTGCTGTAGGAGTACCCCGTGCTTTCTCCGCTTTGCCCACCGCCTGGTCT
TGACACGGTGAAGATAGACAAGCCTGCAAGCTGCGTTTCAGCCCGTGAAC
CAGATCTTAAGTTATGCATCTCCTTCTCCCATGCATCGACCTGGTTGGCG
CCATATTCCGGGCGGCGGGAAAACTTCATCTAGTAGTACAGCGGAGCTGG
AACATGGGATCCAATTCTTCATCGCCGTGTGCCAAGCCGCACGCAATGTT
CGTTCTTTGGCTTTCTGGCCATTTCAACAAAGAGGTAGCTGCAAGGTGGC
ACGCGTCCTTTCCTGTTCAAGCAATAAGGCACCATTGCAAAGCATCCCGG
CAGTGTGAAAATGTGTCACCTACAGTATAAACGAGCGACGAAGAGCGTCA
AACAAGTAGCACTTAGGATCCCTTTTTTTTCACGAGTCACCATCTGCCCT
GAGATCGACGTTGGTGCACAAGGCTTCCATCCTGCAGTATTTGACGCTAT
CTGAGGATCTGAGCGATATCAGCACGAGGCAGGCGACGGCATGGCATGGG
TGTTGTGGCTAAGGTGCATCCGTAGCCATCCATATAAGACCCGCAATCGC
TGCTGTTTGCCCTTTCATGGGCTTTGTAGTTCTTGGAACCTTGGTTGCCT
TCGAGTACGGCATCCCGCACGGCCTGGACTGCTGGGGGTGTGTCGGATTT
CCTGAAATCGTGGGACGTGCATGCACGCATCCATGCGCAAGAGTGGAGGA
GCAACGCCCTCGCCATCGTAAGGGGCATGATCGAAGTCTATTCAACGCAA
GAAAGGAACAAAGGCGCAGCGCAGCGTAGAGCAGCCGATCAAGACGCATC
GATCGCGTCGAAAAGGCATCCCATCCCATTCCAAAAGAAGAGCACAGACA
GGGGGAGAGAGCCTTCATGTGTCACAGGAGACACCAATTATTTTAGAAAA
CAAGTCAACAACACCGAAGGAATACCCACCTAAGACACTGTCCGTCTCAA
GGGGCTTTCGTTAATTCCATTCAGTGAGGCTTCCATTCGAGTAACAGGAT
GAAATTATGTCTCAGTTTGCACGTCGTGAAGACAAACATGAAAAACGTAT
AGGATGGGGGATCGACAAAAACAAAAAGACACCAATTATTTGGACGATAT
ATTTACTTTACTTCCTAACCGATGTAGTCGACTTCGAATGAACACCTTTT
GAGACGAACCCGCCGCGATGCACGACGGCAACCGACCAGGTTGCAGCAGG
AGCTCATGGGTATCATGATGGGTGCCGACCCGGGAGCTTCGGCCTTCCCC
AACGACGACAATCTCTTCGAGTGGACGGCCACGTTGAGCGGGAGCGAGGA
TACGGCGGTAAGACGGGACGGTAGAGACGGAGAGGAAAACTGCCTTCATC
TTACACGCGGTAACTTCCGTGCCTCTTCATTTTTTTTTCCGCGAGAAATA
CGAAGTAAAGAAATAAATCGAGGCGTTGAGGTGTTGAGGTGTTGAGGTGT
TGAGGTGTGTGAAGAAGGACAAATAACCCGCACGCTCTGCCTATTTGACG
TCATGATCTCCCAAACTTCATACGTACAGATCTATACAGTAAAACTACAA
GTAACTTTTAATTCCTCCAACATATCATACCGCCCTTGGAAAAATACCCA
ATCAATCACATTTGTATCTGTGTCTGTACCAGTTGTTCCTCACACAAAAG
ATCTTTCAATCATGCTGGAACAGACCATCAATACAAATCTGTCAACGATC
CAGTACTTCTTATTCCCGTAGTTGAATACCAAAGACAGCCCTCCCGCTGC
GTCCTCCCTTGAACACCAAATCAACCGTTTCCAACCTCCCTAATTTCACG
TCGCAGAGAAATCAGGTCTCCCGAGATTTTCCGTATGTTCCCCTGTTTTC
CTTCTCAAAAATCAATGCCGATAAAATATACTTCAAAGCAACAAATAGGA
ACCATCACTATCGTCGCCGCACGTGAAAAGGCGCTTAGATTCCGACTCCA
ACTTTTACCGAGACAACAATGTCAGCAAGACATATCAGCAAGAAAAATAA
TGTGTTTACGAAACACTCTCCTACATGATGAAATCATCCAATCTCTCACT
GTGCGAAACAGAGAATCATACCAATAATTATGACGATTGGTGCCCCCCGG
ATCTATGGTACACGTGAGTACCACGACGAAACTTACCGCGGTGAACTGCC
CTCCAGATCTGTGATATCTTGAGACACCATCAATACCATGATCAGATACT
CTCGAAATCCACTCGGAAACATCACAAAGATCAAATGGCAATCTGCCGTG
ATCCGCAGGAAAAACGCGGCTCAGTACTCGAACGCGAAACCAGCACTCCA
AATTCGAAAAGTTCAACAAGTACCTCGAATCTGTGATTTCGTGTCATCCG
CAGGGAAAACGCGACCCAGTGTCCGAACCTTGAACGGTACAGAACAGATC
CTAAACCCCTGACATGATTTCCAGGTCTTGGACGCACGCCCTTGCTACTG
CTGTTTGTACATAGTCATGAAACAACATTCCCCCCGTGAGGATCTTGCAC
ACATCAGCGAAGCACAACGCATGCACGGCAAACACAGAAAATTGTCAGCG
GATCAACGGTCTTGCAATGCGGGAAAGAACCCTCAACAGCCTCCCCCGCT
CGCAGAGAGTTCTTTCCTACGCGCAAGATTTCCTTCGTGGACAAATGCCG
AAAAAAAAGAAAGCAAGGCAATGCCATCTCCTAGTAACTCCTTTGGAGGT
GTCCCGAACAGGGCATCGCCGCTGCGAAATTTACACAACAACACGCCGGG
AATATCGTGCTTCACGGCCATAATGCGCCGCTGTACATTAAAAGCATGTG
TAAATCGTTGCGGCCATGCAGTAGAGAGTAGCAAAACCTCTGTGCGGCCA
ACACACGTGAAGCTGAAGCAAGAGCTCACACAGAAAATCTGGATGTCACG
CTTGATACCCGTGTTGAAAATAGTAGCAATGCGGGACAAACCAGGAAACC
GAAGTCCAACTCTAACGTCGTACCGGAACCAAAAAACCGGAGATAAAAAT
CAAAAGTACGCAATCACACAACGTGCCTGATCGGGTCTAACACCCTAGTG
GATGATGCTGCTGTTGACGTCGATGTAGCCTCAAAACACCGTCGCCAAGG
TACACAAGGCCTGTCTCGCTCCTGCCATCGCTCAAACCCTGAAAGCCTTA
CCTCGATCGAACGGGTGTGCGCCACCCTCAGCACGGGTCTCTAATCCCCC
GCCCTTGGCAGAGACTTGCCGCCTCTGCCGCCTGTGCGGGAGCCGTCGGT
GTCGGCAGAGTCCTCGCCGGAGTCGCTGTCACTGCTGCTGTGCCTGCCGT
AGCTGTAGCTGCCGTAGCTGCGGTCGTTGTCTGTCGCGCCGTCGCCCTCC
GCCTCCAATAGCTGTATCTCGCCGAAGTTGGACGATAATAAAATTTCCGT
CGCGGTGTCACCCTTCGTCTCCAGAAGATGTATTTTAACCTTTCCCTCCC
ATGCACATGCCATCACCTCCACATCAGTTTCTGACGTTGCCGTGCTGCTG
CTGCTGCTTCCTGCGCTTGCCGCTTTGCAACTGCGTTTCAAATCTAGACT
CGTGTTGCATCTGCCGAAGAAGAATCTCGAGTTCCATCGGACACAGGATC
ATGGCCCATGTACCCAGGCGACACATTCGGATCTATCAACCTCCAGTGAA
ATATGAAATATCTCACGGCATCCTGCTCCGGCCGGCGAGTTAGTGCTGGA
GAGCTACCCTCTCGCATCTCAGGGTTACCAGATGCGTGTTGCCCGTGCGA
CATCCAACAAGCGTATGAGCTGCAGACCCTAGGTTGTGCGCGAGGGCCTC
CTGCTGCCGCCACTCTAGCCCGTATCCCGTCCGTAGTATCCAGAGACCCA
CCTCATCATCTCCTCGGCATGTTGCCCGTTTGGCTGTAGCTGTTGCAGCC
GGCTGTGTGAGTGATTGTTGCCGGGTCGGCGGGTGGTGATGATCCTCCGG
AGCAAGACGAAATCTATCCGCACCATCCTTTATGGGCGAACCTCTCTGTT
GTTTGCCAACTCTGCACGCCCGCAGCTGCTGTCTCGGCTCCTCGTGCCAC
AGCGTCCTTTCGGCCCTCCTCGATGGCCTTCGACTTGTCACGTGCTGCTT
GAGTTCCTTCTCCAACCTCTTGGTCACCTCCTCGGTCGGCATTGCTTCTC
TTGTGTACCCCTTACCCCGCCAGCTCGTTTGGCTCCCCCGTTGTTTGTCT
TTGCAGCGTCTTCTGCGTGCACCTGTTCTATCGCCGACGTTCCTCGGCAC
CTTTCTACCCGACAGCCAGCTCGTTTGGCTCCCCCGTTGATCGTCTACGC
AGTTTCTTCTACATGCGACTCTTCTCGCGCCATTGTCTTCGGCACCCACT
CTCCCGCCGACTTGCCGCCGGCTCCCCTCTCTCCTCCCCTCCTGCTTTGC
CGATGTCCGGCCGGACTCCAAACGATGGCAATTCGCTATCGTGTTCGAGC
AACTATTGTCGGTGGTAGGTTTGACTACGTCAACACACGGGCATTCCACC
GGGAAGATATGTAGATATGTACCCATTGACGGCGCTTGTTACCCAAGTTA
AAGTGATCACACGGACGCCCAGTTGAGGCGGGCTCTTGTCATCACAATGA
CGCATTCAAAAGTAACGTCGCCTCACGAATCATATGAAACCACAAGGTCT
TCGCAAACTGGTATCGAGCACCTTATTTCTCCAACAGACGCCAGGGAGCA
ATCCAGGCGTTTTTTTTTTGCCAGGCTACTTGAAGTGTGTGCTGAAGGGT
CAAATGGATCGCGAGGGAAGGGTGCGTTTCCTGGCTCCGGGCTTTTCTCT
TAACCTCGCCAAGAAGCGGATAACGGCGCCGCCAGCTGAAGGACCCCGAA
TGCACGCTTCTTTTTGTTTCCGTTTGTTGAGCTGGAAGAACATGACGAAA
CTGATGACAGCAAACACCCTTCCTTTTCTTTTTCTTCCTTTCCTTTTTTT
GCTCTGCCTTTCCCTCCACGGTCGACACTCTTCCCGGAACGAGCAGTATG
AAGGGTTGACCTACAAGCTGAAGCTGGTGTTCCCGGACACGTACCCGTAC
AAGGCCCCGCTGATCACCTTCGAGACGCCCTGCTTCCATCCCAACGTTGA
CGAGCACGGAAACATCTGCCTGGACATCTTGAAGGAGAAGTGGTCCTCGG
CATTCAGCGTCAGCACCATTCTGCAGTCCCTCCGCTCTCTGCTGGCCGGT
GAGTCTACCATCAGCGGATCGGCCAAACGACACCCATGGATCAGCGACAC
GGGAGGCCGTAGCAGTAGCAGTGCCGCAGATGCCGTGCGTTTCTCAGCAT
TCGGTCCTTTCTGGTTGTCGTGGTCTTCAGATGTCCATGTCCCACACTTG
ACGTGTGTTATCACAGCGTCCGAGCATGAGGATGACCGCAATCGGCACTT
CCCGTCTCTGGTGTGGGTGGAAGAATGGGGCATCGTTGGCATGAATGTAG
ACCGTGGCACGAGCATTGGAACTCAAGGAGGGGGAAACCATTTCTCGCGG
GTTGCGATTCGACGACGATCTTAACAAGGGGTCATGCCGAAGCGAAATCT
TTGTTTCCGCGTCTCGAAACCTTCCTCTCACGCGTCTCGAAATCTTCCTC
TCACGCTTTATCGCTTTGTTAACCCTTCGAGCCCAATTTCTTTTCGAACA
CCTTTTTTGGGTAAGCTAGTCTGTGGCCACGGGAATCGTCGCGTCAAGTG
TGGATCAGTACTGGATAGAGAGATCGGAATTCAACGTCAAGACAACAACA
ACATTTTCCTGTTTCACGGAAATCACAGAAAGCACTATTGCGTGCATACC
CTTGCCTCCTTCATCGTACGTAGCCTATTCCAACCCCCCCCCCCTGCTGA
ACCCCTGCGTTGAACCCTCTCCGTTTCAGACCCCAACAACGAAAGTCCCC
TCAACACGGAGGCCGCGCAACTTTGGGCGGACCAGGACAAATACAAACAA
GTGTGCCAACGCAAATACCAAGAGGGACAGGCAGCAACAAAATAACGACG
TCACCAGCGTGTCGGAACGAAAGATGGTTAACGTTCCGTTGCCCTGTACA
GTAGGGCCAGGAAAATGATTGCTTGCAACCGTGTGTTTTGAACGGCCCGG
CGTTGTCGAAGTTGCGTACTCCCCGCATCTTCGAGTTGTACTTCCTAGGG
AGCAACGATCGCAAACTGCGATTCTCCGTTAGTTTAGTGTTTACTTTCTT
ACAGCGTCTCAAGTGTACACACAGCGATCTAGTCGTTCAGTGAAGGCAAC
CACCCGCCATTGGCTTGTCGTGGCCTGTGTACGGCGAGCTACCATCCGTT
GATACAGGGGTGACGGCGACGCCGCCGTTCGTTGTGCTTGATTCACAATG
TTTTGTCCAAAAGGGAACGGCCTTGCGTGTTCCGTTGGCGTTACCCGACT
ACAATAGTTGGCGATAGGCCAAACCTGTGTGAACGATGTACACGGTCATT
CCAACTCTTGTCGTCGATCTTCTACAGCTGGTTGTTCAGTCTGACTGAAG
AGAGCGGGCGTCTCATCAGGTGTAATATTATTTTGGAAGGGGGTTGCTCG
GAAACGCGAGTGGTGAGCTTGAGTCGAGAGGGGCCAGCTGCAGTTCATCT
AGTCTGTCTTTGTACGTGATGGTGGTGTTGGTGTTTGTGGTGATGGGCGG
GGTTCCTTCAAAGTCGCGACGGTGCAGTGAGTTGTTGAGAGCCCACAGTT
TCCAGACGTTGAAAGAGGACTTCAACTACTTGAAGGCATTCCAATGAGCA
TTTCACGCATGCTTCGCTTCGCGGCACGCGAGCACGATCGGTGTCGACCC
GCCAAGAGCACTCTTCTCGCGATTTTGATGCATGCAGCCTTGTCGGCTTT
TTACACCTCGTCGAAGTACTCATTCCTCTCGAGTCAACCGACAAGCCCGA
GCGAGCAGTCTGAATAAAGTGCCACGCTCACGCACGCTGACTCGGCTCTT
GGTCCGTGTGCGACCGACCCAGTAGGCGGTCTTTCCGCCTCCCCCCCCCA
CGAAAGCAGGACATCTGCCCGTCTAAGTCATCCGAGGAACGCAGACGCTT
TTTTTAAGACCCATAAATCGATTTGGCCTCCGTGCCGTAGCCTGGCCGAC
CTTCGAAAATCACCCCCAGGATTTGTTGCCGCGAGTGCCGCTCGAATATT
CGCCCGGACTTTGCCAGAGTATGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1276:7429..15153-

>mRNA_H-canaliculatus_F_contig1276.2299.1 ID=mRNA_H-canaliculatus_F_contig1276.2299.1|Name=mRNA_H-canaliculatus_F_contig1276.2299.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1276:7429..15153- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCCTCTGGCGGAGATGTCACAAGAAGATGGCCTCTGGCGGAGATGTC
ACAAGAAGGTTGCAGCAGGAGCTCATGGGTATCATGATGGGTGCCGACCC
GGGAGCTTCGGCCTTCCCCAACGACGACAATCTCTTCGAGTGGACGGCCA
CGTTGAGCGGGAGCGAGGATACGGCGGTTGCAGCAGGAGCTCATGGGTAT
CATGATGGGTGCCGACCCGGGAGCTTCGGCCTTCCCCAACGACGACAATC
TCTTCGAGTGGACGGCCACGTTGAGCGGGAGCGAGGATACGGCGTATGAA
GGGTTGACCTACAAGCTGAAGCTGGTGTTCCCGGACACGTACCCGTACAA
GGCCCCGCTGATCACCTTCGAGACGCCCTGCTTCCATCCCAACGTTGACG
AGCACGGAAACATCTGCCTGGACATCTTGAAGGAGAAGTGGTCCTCGGCA
TTCAGCGTCAGCACCATTCTGCAGTCCCTCCGCTCTCTGCTGGCCGTATG
AAGGGTTGACCTACAAGCTGAAGCTGGTGTTCCCGGACACGTACCCGTAC
AAGGCCCCGCTGATCACCTTCGAGACGCCCTGCTTCCATCCCAACGTTGA
CGAGCACGGAAACATCTGCCTGGACATCTTGAAGGAGAAGTGGTCCTCGG
CATTCAGCGTCAGCACCATTCTGCAGTCCCTCCGCTCTCTGCTGGCCGAC
CCCAACAACGAAAGTCCCCTCAACACGGAGGCCGCGCAACTTTGGGCGGA
CCAGGACAAATACAAACAAGTGTGCCAACGCAAATACCAAGAGGGACAGG
CAGCAACAAAATAAACCCCAACAACGAAAGTCCCCTCAACACGGAGGCCG
CGCAACTTTGGGCGGACCAGGACAAATACAAACAAGTGTGCCAACGCAAA
TACCAAGAGGGACAGGCAGCAACAAAATAA
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