mRNA_H-canaliculatus_F_contig12752.2295.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12752.2295.1
Unique NamemRNA_H-canaliculatus_F_contig12752.2295.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12752.2295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12752contigH-canaliculatus_F_contig12752:784..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.9637647-CDS-H-canaliculatus_F_contig12752:783..12421622928996.9637647-CDS-H-canaliculatus_F_contig12752:783..1242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12752 784..1242 +
1696845643.5327928-CDS-H-canaliculatus_F_contig12752:783..12421696845643.5327928-CDS-H-canaliculatus_F_contig12752:783..1242Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12752 784..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12752.2295.1prot_H-canaliculatus_F_contig12752.2295.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12752 784..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12752.2295.1

>prot_H-canaliculatus_F_contig12752.2295.1 ID=prot_H-canaliculatus_F_contig12752.2295.1|Name=mRNA_H-canaliculatus_F_contig12752.2295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
RGRTRARSRALRGEMAKTAKSLGGTSATASSPVPGILASGERREDVRPEK
RGGSGAHATGVAMAAAAEGERSSSSDPIVVRTAADAGAATAAAAATPSPV
GRREEGGAAPQAGGRSTGAVDGGGGEELGRFDGTGRDGGPRRLVGAASVS
EDE
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mRNA from alignment at H-canaliculatus_F_contig12752:784..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12752.2295.1 ID=mRNA_H-canaliculatus_F_contig12752.2295.1|Name=mRNA_H-canaliculatus_F_contig12752.2295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12752:784..1244+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGGGAGAACGAGGGCACGATCACGAGCCTTGAGGGGAGAGATGGCCAA
GACGGCGAAAAGCCTGGGGGGAACATCGGCCACCGCGTCTTCTCCCGTTC
CCGGTATCTTGGCCTCGGGCGAACGCAGAGAGGACGTCCGACCGGAGAAG
AGGGGAGGGTCTGGAGCACACGCAACGGGAGTAGCAATGGCGGCGGCGGC
GGAAGGAGAGCGATCGTCTAGCAGTGACCCGATAGTCGTCAGGACGGCAG
CAGACGCAGGGGCAGCAACAGCAGCGGCAGCGGCGACACCCTCACCGGTG
GGAAGACGCGAGGAGGGCGGAGCAGCACCGCAAGCCGGGGGTCGGAGTAC
GGGCGCCGTCGACGGGGGCGGCGGCGAGGAGCTTGGCAGGTTCGACGGAA
CCGGTAGGGACGGTGGACCAAGACGACTCGTGGGTGCGGCTTCGGTGAGC
GAGGACGAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12752:784..1244+

>mRNA_H-canaliculatus_F_contig12752.2295.1 ID=mRNA_H-canaliculatus_F_contig12752.2295.1|Name=mRNA_H-canaliculatus_F_contig12752.2295.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12752:784..1244+ (Hapterophycus canaliculatus Oshoro5f female)
CGTGGGAGAACGAGGGCACGATCACGAGCCTTGAGGGGAGAGATGGCCAA
GACGGCGAAAAGCCTGGGGGGAACATCGGCCACCGCGTCTTCTCCCGTTC
CCGGTATCTTGGCCTCGGGCGAACGCAGAGAGGACGTCCGACCGGAGAAG
AGGGGAGGGTCTGGAGCACACGCAACGGGAGTAGCAATGGCGGCGGCGGC
GGAAGGAGAGCGATCGTCTAGCAGTGACCCGATAGTCGTCAGGACGGCAG
CAGACGCAGGGGCAGCAACAGCAGCGGCAGCGGCGACACCCTCACCGGTG
GGAAGACGCGAGGAGGGCGGAGCAGCACCGCAAGCCGGGGGTCGGAGTAC
GGGCGCCGTCGACGGGGGCGGCGGCGAGGAGCTTGGCAGGTTCGACGGAA
CCGGTAGGGACGGTGGACCAAGACGACTCGTGGGTGCGGCTTCGGTGAGC
GAGGACGAGCGTGGGAGAACGAGGGCACGATCACGAGCCTTGAGGGGAGA
GATGGCCAAGACGGCGAAAAGCCTGGGGGGAACATCGGCCACCGCGTCTT
CTCCCGTTCCCGGTATCTTGGCCTCGGGCGAACGCAGAGAGGACGTCCGA
CCGGAGAAGAGGGGAGGGTCTGGAGCACACGCAACGGGAGTAGCAATGGC
GGCGGCGGCGGAAGGAGAGCGATCGTCTAGCAGTGACCCGATAGTCGTCA
GGACGGCAGCAGACGCAGGGGCAGCAACAGCAGCGGCAGCGGCGACACCC
TCACCGGTGGGAAGACGCGAGGAGGGCGGAGCAGCACCGCAAGCCGGGGG
TCGGAGTACGGGCGCCGTCGACGGGGGCGGCGGCGAGGAGCTTGGCAGGT
TCGACGGAACCGGTAGGGACGGTGGACCAAGACGACTCGTGGGTGCGGCT
TCGGTGAGCGAGGACGAG
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