mRNA_H-canaliculatus_F_contig12750.2294.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12750.2294.1
Unique NamemRNA_H-canaliculatus_F_contig12750.2294.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A6H5KM86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 2.810e-32
Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 1
Query:   10 YCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
            +C+GCG+SR +G TSTWC+KC +   +C LCD+PVVG Y+ECPGCHHGGHA+H+M+WF +S ECPVETC H C
Sbjct:  549 FCSGCGTSRSTG-TSTWCSKCERQASLCALCDLPVVGLYVECPGCHHGGHAEHLMNWFEVSSECPVETCSHVC 620          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: D8LB28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB28_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 7.740e-25
Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1
Query:   10 YCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMM 174
            +C+GCG+SR +G TSTWC+KCA+   +C +CD+PVVG YIECPGCHHGGHA+HMM
Sbjct:   15 FCSGCGTSRSTG-TSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMM 68          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: T2M6F6_HYDVU (GATOR complex protein WDR24 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M6F6_HYDVU)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12
Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1
Query:    1 ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
            + + C  C     S S   +C  C +   +C +C +PV G Y+ C GC HGGH +H+ SWFS  + CP+  C H+C
Sbjct:  672 VHMQCGICYKVLSSTSHGWYCRNCKRSAQICAICHIPVKGLYLWCQGCGHGGHLNHIKSWFSEQKFCPIG-CGHKC 746          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A6B2KYL6_9EUKA (ZZ-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYL6_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    7 LYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
            L C+GC  SR   +   +C KC  +  +C +C++PV G Y+ C GC HGGH +H+ SWF  + +CP   C H C
Sbjct:  665 LSCSGC--SRQLEAGGWYCYKCKAYK-LCDICNLPVKGNYVWCQGCGHGGHREHLESWFQANTKCPTG-CSHIC 734          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A168PE20_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168PE20_ABSGL)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-11
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 ISLYCTGCGSSRPSGSTSTW-CTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
            I++ C+ C       +   W C KC +    C +C+  V G Y+ C GC+HGGH +HM SWF+  ++CP   C H C
Sbjct:  673 INIACSNCFKLVLGTAQGAWACDKCHRLLNPCSICNQTVKGLYVWCQGCNHGGHLEHMRSWFAKEKQCPTG-CGHNC 748          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: F0ZLR7_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZLR7_DICPU)

HSP 1 Score: 66.6 bits (161), Expect = 4.440e-11
Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1
Query:   13 CTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRE--CPVETCDHEC 228
            C+ CG S P  S    C KC +    C +C +PV G ++ C GC HGGH DHM SWF  +++  CP   C H C
Sbjct:  832 CSHCGKSIPQNSLI--CEKCNRIASKCSICRLPVKGVFVWCQGCGHGGHLDHMKSWFIDNKQKSCPTG-CTHIC 902          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: WDR24_DICDI (GATOR complex protein WDR24 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=WDR24_DICDI)

HSP 1 Score: 66.6 bits (161), Expect = 4.450e-11
Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 1
Query:   13 CTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWF--SISRECPVETCDHEC 228
            C+ CG S P  S    C KC + +  C +C +PV G ++ C GC HGGH +HM SWF     + CP   C H C
Sbjct:  948 CSSCGKSIPQNSII--CEKCNKASSKCSICRLPVKGMWVWCQGCGHGGHLEHMKSWFIDKNQKSCPTG-CTHIC 1018          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A1Y1WAS1_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WAS1_9FUNG)

HSP 1 Score: 65.1 bits (157), Expect = 1.570e-10
Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1
Query:   61 CTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSI--SRECPVETCDHEC 228
            C +C + +  C +C  PV+GR++ C GC HGGHADH   WF      ECP   C H C
Sbjct: 1466 CVECKRASTQCAVCQEPVIGRFVWCQGCGHGGHADHFHEWFDDLDQTECP-SGCGHAC 1522          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A0V1F2B4_TRIPS (GATOR complex protein WDR24 n=16 Tax=Trichinella TaxID=6333 RepID=A0A0V1F2B4_TRIPS)

HSP 1 Score: 63.9 bits (154), Expect = 3.920e-10
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1
Query:    1 ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
            I ++C  C   +P+ + S  C  C +    C +C+  + G ++ CPGC HGGH +H+ SWF     CP   C H+C
Sbjct:  673 IMIFCPHC--EKPAFNKSWICNSCNRPLENCSVCEETIRGLFLWCPGCLHGGHLNHIESWFQSHNLCPTG-CGHKC 745          
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A7S2VGD3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGD3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.300e-10
Identity = 27/67 (40.30%), Postives = 34/67 (50.75%), Query Frame = 1
Query:   43 GSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWF-----SISRECPVETCDHEC 228
            G +   C  C +    C LC +PV G Y+ CPGC HGGH +H ++WF     S  RE     C H C
Sbjct:  590 GLSRQTCKSCHRRIGKCFLCHLPVTGMYVWCPGCGHGGHLEHALTWFGGLGGSAMRETCPTGCGHRC 656          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KM86_9PHAE2.810e-3265.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB28_ECTSI7.740e-2569.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
T2M6F6_HYDVU1.040e-1238.16GATOR complex protein WDR24 n=2 Tax=Hydra vulgaris... [more]
A0A6B2KYL6_9EUKA1.040e-1241.89ZZ-type domain-containing protein n=1 Tax=Arcella ... [more]
A0A168PE20_ABSGL1.270e-1137.66Uncharacterized protein n=1 Tax=Absidia glauca Tax... [more]
F0ZLR7_DICPU4.440e-1143.24Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
WDR24_DICDI4.450e-1141.89GATOR complex protein WDR24 n=1 Tax=Dictyostelium ... [more]
A0A1Y1WAS1_9FUNG1.570e-1044.83Uncharacterized protein n=1 Tax=Linderina pennispo... [more]
A0A0V1F2B4_TRIPS3.920e-1035.53GATOR complex protein WDR24 n=16 Tax=Trichinella T... [more]
A0A7S2VGD3_9STRA7.300e-1040.30Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12750contigH-canaliculatus_F_contig12750:238..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue8.7e-10
Seed eggNOG ortholog4787.PITG_06945T0
KEGG koko:K20408
KEGG Pathwayko04150,map04150
EggNOG free text desc.Anaphase-promoting complex subunit 4 WD40 domain
EggNOG OGs3QA2A@4776,KOG0269@1,KOG0269@2759
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_005460.1
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.8876715-CDS-H-canaliculatus_F_contig12750:237..4111622928996.8876715-CDS-H-canaliculatus_F_contig12750:237..411Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12750 238..411 +
1696845643.5121756-CDS-H-canaliculatus_F_contig12750:237..4111696845643.5121756-CDS-H-canaliculatus_F_contig12750:237..411Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12750 238..411 +
1622928996.9045687-CDS-H-canaliculatus_F_contig12750:944..9981622928996.9045687-CDS-H-canaliculatus_F_contig12750:944..998Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12750 945..998 +
1696845643.524031-CDS-H-canaliculatus_F_contig12750:944..9981696845643.524031-CDS-H-canaliculatus_F_contig12750:944..998Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12750 945..998 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12750.2294.1prot_H-canaliculatus_F_contig12750.2294.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12750 238..998 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12750.2294.1

>prot_H-canaliculatus_F_contig12750.2294.1 ID=prot_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp
ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHH
GGHADHMMSWFSISRECPVETCDHEC
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mRNA from alignment at H-canaliculatus_F_contig12750:238..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12750.2294.1 ID=mRNA_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=761bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12750:238..998+ (Hapterophycus canaliculatus Oshoro5f female)
ATCTCCTTATACTGCACCGGCTGCGGGAGCTCGCGTCCCTCGGGTAGTAC ATCCACCTGGTGCACCAAGTGCGCACAGCACACGCCAATGTGCCCTCTGT GCGATGTGCCAGTGGTCGGGCGTTACATCGAGTGCCCTGGATGTCACCAC GGGGGCCACGCAGACCACATGATGGTGAGTTTATGAAAGGGAGACGGGCT CTAGCGATAGTTTGTGCAGGAAACGGCGCTCCAGGTGGGTCGTTGTTTAC TTTTTGTGGTGCTGATGGTAGCTGATGGTAGTGGTAGCCGCGACCAAGCT TGCGATGGGTGAACAGAGTGGTCGAGCTGAAGAAGGGCGAATGTTCATCA ACGACCTTGACGAATGTTCGTCACCGGCCTTGCTCTTCTGTGCGTAGACG TTGTTTGTGTTGCATAGGATTGCGTTCCAGTTTGCCAGTTACACTACTTC GAAGTAAATAGTATGCCGTCCCGGGGGTCATCGTCTTTTTCGAAGTCGTC GCTGTCGTAGTCGTCGCCGTCGTCGCAGTCGTGGTCGGTAAACTAGCCAT TGCCGTTGATGTTGCCGCAGCTCTTTGCTCATGACGACGTCTCCTGCACT CCGATGAAGGGCTAATGCGTGCGACAGCAAGAATGCCTGAGGCTCAGTCC TGATCCCAGCCACTCCATCCTCCCCTTCCCCGCGCGCACCTTGTGGACGT CCTCCAGAGCTGGTTCTCAATCTCGAGAGAATGCCCTGTAGAGACCTGCG ATCACGAGTGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12750:238..998+

>mRNA_H-canaliculatus_F_contig12750.2294.1 ID=mRNA_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12750:238..998+ (Hapterophycus canaliculatus Oshoro5f female)
ATCTCCTTATACTGCACCGGCTGCGGGAGCTCGCGTCCCTCGGGTAGTAC
ATCCACCTGGTGCACCAAGTGCGCACAGCACACGCCAATGTGCCCTCTGT
GCGATGTGCCAGTGGTCGGGCGTTACATCGAGTGCCCTGGATGTCACCAC
GGGGGCCACGCAGACCACATGATGATCTCCTTATACTGCACCGGCTGCGG
GAGCTCGCGTCCCTCGGGTAGTACATCCACCTGGTGCACCAAGTGCGCAC
AGCACACGCCAATGTGCCCTCTGTGCGATGTGCCAGTGGTCGGGCGTTAC
ATCGAGTGCCCTGGATGTCACCACGGGGGCCACGCAGACCACATGATGAG
CTGGTTCTCAATCTCGAGAGAATGCCCTGTAGAGACCTGCGATCACGAGT
GCAGCTGGTTCTCAATCTCGAGAGAATGCCCTGTAGAGACCTGCGATCAC
GAGTGC
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