mRNA_H-canaliculatus_F_contig12750.2294.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A6H5KM86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM86_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.810e-32 Identity = 48/73 (65.75%), Postives = 61/73 (83.56%), Query Frame = 1
Query: 10 YCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
+C+GCG+SR +G TSTWC+KC + +C LCD+PVVG Y+ECPGCHHGGHA+H+M+WF +S ECPVETC H C
Sbjct: 549 FCSGCGTSRSTG-TSTWCSKCERQASLCALCDLPVVGLYVECPGCHHGGHAEHLMNWFEVSSECPVETCSHVC 620
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: D8LB28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB28_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 7.740e-25 Identity = 38/55 (69.09%), Postives = 48/55 (87.27%), Query Frame = 1
Query: 10 YCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMM 174
+C+GCG+SR +G TSTWC+KCA+ +C +CD+PVVG YIECPGCHHGGHA+HMM
Sbjct: 15 FCSGCGTSRSTG-TSTWCSKCARQASLCAVCDLPVVGLYIECPGCHHGGHAEHMM 68
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: T2M6F6_HYDVU (GATOR complex protein WDR24 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2M6F6_HYDVU) HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12 Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 1
Query: 1 ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
+ + C C S S +C C + +C +C +PV G Y+ C GC HGGH +H+ SWFS + CP+ C H+C
Sbjct: 672 VHMQCGICYKVLSSTSHGWYCRNCKRSAQICAICHIPVKGLYLWCQGCGHGGHLNHIKSWFSEQKFCPIG-CGHKC 746
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A6B2KYL6_9EUKA (ZZ-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYL6_9EUKA) HSP 1 Score: 71.2 bits (173), Expect = 1.040e-12 Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 1
Query: 7 LYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
L C+GC SR + +C KC + +C +C++PV G Y+ C GC HGGH +H+ SWF + +CP C H C
Sbjct: 665 LSCSGC--SRQLEAGGWYCYKCKAYK-LCDICNLPVKGNYVWCQGCGHGGHREHLESWFQANTKCPTG-CSHIC 734
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A168PE20_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168PE20_ABSGL) HSP 1 Score: 68.2 bits (165), Expect = 1.270e-11 Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 1
Query: 1 ISLYCTGCGSSRPSGSTSTW-CTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
I++ C+ C + W C KC + C +C+ V G Y+ C GC+HGGH +HM SWF+ ++CP C H C
Sbjct: 673 INIACSNCFKLVLGTAQGAWACDKCHRLLNPCSICNQTVKGLYVWCQGCNHGGHLEHMRSWFAKEKQCPTG-CGHNC 748
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: F0ZLR7_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZLR7_DICPU) HSP 1 Score: 66.6 bits (161), Expect = 4.440e-11 Identity = 32/74 (43.24%), Postives = 41/74 (55.41%), Query Frame = 1
Query: 13 CTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRE--CPVETCDHEC 228
C+ CG S P S C KC + C +C +PV G ++ C GC HGGH DHM SWF +++ CP C H C
Sbjct: 832 CSHCGKSIPQNSLI--CEKCNRIASKCSICRLPVKGVFVWCQGCGHGGHLDHMKSWFIDNKQKSCPTG-CTHIC 902
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: WDR24_DICDI (GATOR complex protein WDR24 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=WDR24_DICDI) HSP 1 Score: 66.6 bits (161), Expect = 4.450e-11 Identity = 31/74 (41.89%), Postives = 40/74 (54.05%), Query Frame = 1
Query: 13 CTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWF--SISRECPVETCDHEC 228
C+ CG S P S C KC + + C +C +PV G ++ C GC HGGH +HM SWF + CP C H C
Sbjct: 948 CSSCGKSIPQNSII--CEKCNKASSKCSICRLPVKGMWVWCQGCGHGGHLEHMKSWFIDKNQKSCPTG-CTHIC 1018
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A1Y1WAS1_9FUNG (Uncharacterized protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WAS1_9FUNG) HSP 1 Score: 65.1 bits (157), Expect = 1.570e-10 Identity = 26/58 (44.83%), Postives = 33/58 (56.90%), Query Frame = 1
Query: 61 CTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSI--SRECPVETCDHEC 228
C +C + + C +C PV+GR++ C GC HGGHADH WF ECP C H C
Sbjct: 1466 CVECKRASTQCAVCQEPVIGRFVWCQGCGHGGHADHFHEWFDDLDQTECP-SGCGHAC 1522
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A0V1F2B4_TRIPS (GATOR complex protein WDR24 n=16 Tax=Trichinella TaxID=6333 RepID=A0A0V1F2B4_TRIPS) HSP 1 Score: 63.9 bits (154), Expect = 3.920e-10 Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1
Query: 1 ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWFSISRECPVETCDHEC 228
I ++C C +P+ + S C C + C +C+ + G ++ CPGC HGGH +H+ SWF CP C H+C
Sbjct: 673 IMIFCPHC--EKPAFNKSWICNSCNRPLENCSVCEETIRGLFLWCPGCLHGGHLNHIESWFQSHNLCPTG-CGHKC 745
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Match: A0A7S2VGD3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VGD3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 7.300e-10 Identity = 27/67 (40.30%), Postives = 34/67 (50.75%), Query Frame = 1
Query: 43 GSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHGGHADHMMSWF-----SISRECPVETCDHEC 228
G + C C + C LC +PV G Y+ CPGC HGGH +H ++WF S RE C H C
Sbjct: 590 GLSRQTCKSCHRRIGKCFLCHLPVTGMYVWCPGCGHGGHLEHALTWFGGLGGSAMRETCPTGCGHRC 656 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12750.2294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12750.2294.1 >prot_H-canaliculatus_F_contig12750.2294.1 ID=prot_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=76bp ISLYCTGCGSSRPSGSTSTWCTKCAQHTPMCPLCDVPVVGRYIECPGCHHback to top mRNA from alignment at H-canaliculatus_F_contig12750:238..998+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig12750.2294.1 ID=mRNA_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=761bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12750:238..998+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12750:238..998+ >mRNA_H-canaliculatus_F_contig12750.2294.1 ID=mRNA_H-canaliculatus_F_contig12750.2294.1|Name=mRNA_H-canaliculatus_F_contig12750.2294.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12750:238..998+ (Hapterophycus canaliculatus Oshoro5f female)back to top |