mRNA_H-canaliculatus_F_contig1275.2292.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1275.2292.1
Unique NamemRNA_H-canaliculatus_F_contig1275.2292.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1275.2292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1275contigH-canaliculatus_F_contig1275:10318..10955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size638
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1275.2292.1prot_H-canaliculatus_F_contig1275.2292.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1275 10423..10764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.2454295-UTR-H-canaliculatus_F_contig1275:10317..104221622928996.2454295-UTR-H-canaliculatus_F_contig1275:10317..10422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 10318..10422 +
1696845643.2503073-UTR-H-canaliculatus_F_contig1275:10317..104221696845643.2503073-UTR-H-canaliculatus_F_contig1275:10317..10422Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 10318..10422 +
1622928996.2779346-UTR-H-canaliculatus_F_contig1275:10764..109551622928996.2779346-UTR-H-canaliculatus_F_contig1275:10764..10955Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 10765..10955 +
1696845643.271057-UTR-H-canaliculatus_F_contig1275:10764..109551696845643.271057-UTR-H-canaliculatus_F_contig1275:10764..10955Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1275 10765..10955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.2647455-CDS-H-canaliculatus_F_contig1275:10422..107641622928996.2647455-CDS-H-canaliculatus_F_contig1275:10422..10764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 10423..10764 +
1696845643.2604532-CDS-H-canaliculatus_F_contig1275:10422..107641696845643.2604532-CDS-H-canaliculatus_F_contig1275:10422..10764Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1275 10423..10764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1275.2292.1

>prot_H-canaliculatus_F_contig1275.2292.1 ID=prot_H-canaliculatus_F_contig1275.2292.1|Name=mRNA_H-canaliculatus_F_contig1275.2292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MGWGRGMRRNIVETKLHSLGTGIAESSAMSTRHMVCRSRRCSCFAARLAT
RAEVSTHSSFVRIGHPKKLKLTRRQLHTTAADDFNGNMVLDDTKNDLGTS
KRKMVPTYNTKYI*
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mRNA from alignment at H-canaliculatus_F_contig1275:10318..10955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1275.2292.1 ID=mRNA_H-canaliculatus_F_contig1275.2292.1|Name=mRNA_H-canaliculatus_F_contig1275.2292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=638bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:10318..10955+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGAAGAGGAGTCGTCGCAACCGCAGTCGGTGTCCGCGCTACCGCTGCC
CTCCGTGGTTGAGCTCACCCAACCTTCGCGTGTTTTCTGTCCCATTGGGT
CAGGGATGGGATGGGGCAGAGGCATGAGGCGCAATATCGTGGAGACAAAA
CTACACTCGCTGGGAACAGGCATCGCGGAGTCTAGTGCGATGTCGACCAG
GCATATGGTTTGCAGAAGCAGACGATGCAGCTGTTTTGCAGCTCGGCTTG
CAACGCGCGCGGAGGTTTCAACACACAGCAGCTTTGTGCGCATCGGCCAT
CCCAAAAAACTAAAACTTACCCGGAGACAGCTACATACAACCGCAGCGGA
TGATTTTAACGGCAACATGGTCTTGGATGACACCAAAAACGACCTTGGTA
CGTCAAAAAGAAAAATGGTTCCAACTTACAACACGAAATACATTTAGCTC
CTGGAGGAACGTTCAAAAAGCGTGTTTTTTTAAAACAAAACTCAACGCAA
CGAAAGTACGGGGTAGGTCTGCAGCCAACTTGCTGTCGGCATCATTGCAC
CTCTTTCCCTTCGTAGCACTCGAGTTGTCCACTCCCGACGATGAAATCCA
CGTGGTCCTCGTGAAGCACAGCGACGTGTCCGCAAGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1275:10318..10955+

>mRNA_H-canaliculatus_F_contig1275.2292.1 ID=mRNA_H-canaliculatus_F_contig1275.2292.1|Name=mRNA_H-canaliculatus_F_contig1275.2292.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1275:10318..10955+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGATGGGGCAGAGGCATGAGGCGCAATATCGTGGAGACAAAACTACA
CTCGCTGGGAACAGGCATCGCGGAGTCTAGTGCGATGTCGACCAGGCATA
TGGTTTGCAGAAGCAGACGATGCAGCTGTTTTGCAGCTCGGCTTGCAACG
CGCGCGGAGGTTTCAACACACAGCAGCTTTGTGCGCATCGGCCATCCCAA
AAAACTAAAACTTACCCGGAGACAGCTACATACAACCGCAGCGGATGATT
TTAACGGCAACATGGTCTTGGATGACACCAAAAACGACCTTGGTACGTCA
AAAAGAAAAATGGTTCCAACTTACAACACGAAATACATTTAGATGGGATG
GGGCAGAGGCATGAGGCGCAATATCGTGGAGACAAAACTACACTCGCTGG
GAACAGGCATCGCGGAGTCTAGTGCGATGTCGACCAGGCATATGGTTTGC
AGAAGCAGACGATGCAGCTGTTTTGCAGCTCGGCTTGCAACGCGCGCGGA
GGTTTCAACACACAGCAGCTTTGTGCGCATCGGCCATCCCAAAAAACTAA
AACTTACCCGGAGACAGCTACATACAACCGCAGCGGATGATTTTAACGGC
AACATGGTCTTGGATGACACCAAAAACGACCTTGGTACGTCAAAAAGAAA
AATGGTTCCAACTTACAACACGAAATACATTTAG
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