mRNA_H-canaliculatus_F_contig12736.2281.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12736.2281.1
Unique NamemRNA_H-canaliculatus_F_contig12736.2281.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12736.2281.1 vs. uniprot
Match: A0A6H5K285_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K285_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.160e-11
Identity = 154/250 (61.60%), Postives = 162/250 (64.80%), Query Frame = 1 
Query:  322 PFGVQQGASQQQALVPYGSQXXXXXXXQGTQQGLLSLGPSTTSAVDPFAPSAGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--FAPATQQPXXXXXXXXXXXXXXXXXXQVLASAANPFSNQLAPVPVGFNGXXXXXXXXXXXXXPFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPTGGAWDPFAPGPPANGQXXXXXXXXXXQAPQPVDDWGLGELTDAEIWGNLPTRKET 1065
            PFGVQQG S QQALVPYG+Q     XX   Q G+L+LGPST+S  DPFAP+    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX               F  A QQ  XXXXXXXXXXXXXXX  QVLASAANPFSNQLAP PVGF    XXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXX                                         DDWGLGELTDA+IWGNLP++KET
Sbjct:   95 PFGVQQGGSSQQALVPYGTQTGQPQXXX--QGGILALGPSTSST-DPFAPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPFQGGGRGFNNSQGFGAAPQQ--XXXXXXXXXXXXXXXQNQVLASAANPFSNQLAPAPVGFVQSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------ADDWGLGELTDADIWGNLPSKKET 299
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BLAST of mRNA_H-canaliculatus_F_contig12736.2281.1 vs. uniprot
Match: D8LHB5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB5_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.120e-9
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  907 AWDPFAPGPPANGQXXXXXXXXXXQAPQPVDDWGLGELTDAEIWGNLPTRKET 1065
            AWDPFAPGP +NGQXXXXXXXXX       DDWGLGELTDA+IWGNLP++KET
Sbjct:  213 AWDPFAPGPQSNGQXXXXXXXXX------ADDWGLGELTDADIWGNLPSKKET 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12736.2281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K285_9PHAE4.160e-1161.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHB5_ECTSI4.120e-977.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12736contigH-canaliculatus_F_contig12736:821..3412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1065
Cds size1065
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12736.2281.1prot_H-canaliculatus_F_contig12736.2281.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12736 821..3412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.7122142-CDS-H-canaliculatus_F_contig12736:820..9881622928994.7122142-CDS-H-canaliculatus_F_contig12736:820..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 821..988 -
1696845642.620381-CDS-H-canaliculatus_F_contig12736:820..9881696845642.620381-CDS-H-canaliculatus_F_contig12736:820..988Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 821..988 -
1622928994.7253654-CDS-H-canaliculatus_F_contig12736:1494..20061622928994.7253654-CDS-H-canaliculatus_F_contig12736:1494..2006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 1495..2006 -
1696845642.6323895-CDS-H-canaliculatus_F_contig12736:1494..20061696845642.6323895-CDS-H-canaliculatus_F_contig12736:1494..2006Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 1495..2006 -
1622928994.7449226-CDS-H-canaliculatus_F_contig12736:2598..27971622928994.7449226-CDS-H-canaliculatus_F_contig12736:2598..2797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 2599..2797 -
1696845642.646893-CDS-H-canaliculatus_F_contig12736:2598..27971696845642.646893-CDS-H-canaliculatus_F_contig12736:2598..2797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 2599..2797 -
1622928994.7768972-CDS-H-canaliculatus_F_contig12736:3226..34121622928994.7768972-CDS-H-canaliculatus_F_contig12736:3226..3412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 3227..3412 -
1696845642.6586444-CDS-H-canaliculatus_F_contig12736:3226..34121696845642.6586444-CDS-H-canaliculatus_F_contig12736:3226..3412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12736 3227..3412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12736.2281.1

>prot_H-canaliculatus_F_contig12736.2281.1 ID=prot_H-canaliculatus_F_contig12736.2281.1|Name=mRNA_H-canaliculatus_F_contig12736.2281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=355bp
SVDPYDPNGGVMSAALVPFGTSNDDGGYGGGAGGGGANDGSFGGGGGGGG
GQQWQQQQPQQQQGGMPQAGMQQQGLGGGGGGGGGGGGFTGGMVQQQPQQ
PQQQQQQPFGVQQGASQQQALVPYGSQPAQPQQQQGTQQGLLSLGPSTTS
AVDPFAPSAGVGGGGGSGGGFLALPSSQTSASNAFGANSTSTTNNPFQQQ
QQGGFAPATQQPQQQQQQQQQQLQHQHQQNQVLASAANPFSNQLAPVPVG
FNGGGGASGGGGGGWDPFTSTPSQPQQQPYQQQQQQTQPQPQPQQQQQPT
GGAWDPFAPGPPANGQQQQQQQQQQQQAPQPVDDWGLGELTDAEIWGNLP
TRKET
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mRNA from alignment at H-canaliculatus_F_contig12736:821..3412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12736.2281.1 ID=mRNA_H-canaliculatus_F_contig12736.2281.1|Name=mRNA_H-canaliculatus_F_contig12736.2281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2592bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12736:821..3412- (Hapterophycus canaliculatus Oshoro5f female)
TCCGTGGACCCATACGACCCCAACGGGGGAGTGATGTCTGCGGCTTTGGT
GCCCTTCGGCACCAGCAACGACGACGGCGGGTACGGGGGCGGCGCGGGCG
GGGGCGGGGCTAATGACGGAAGCTTTGGAGGAGGAGGAGGAGGCGGGGGA
GGGCAGCAGTGGCAGCAGCAGCAGCCCCAACAGCAGGTCCGCCGTCCTTG
TTGTATTCGTTGTCGCGCTCGTTGATCGTGTCGGTGGTGGTGATCGTGGT
CAAGCGTGGTGGAAGTCTCGGGCACCATCGGTGTCGGCCGATGGGTGTCC
GCAAGTGTTGCCATCGGGAGTCGGTAGCCGTGGTTCGGATGGGCGTCGTC
ACGAGTATGGCCCCGATTCTCGTGCCGGCGGGACGATGGCAGTGTTGACG
AACGGCCGTTGCCGTTGAGGCACGGGTGCCAGGCGCTCTTCTCCAGCTAG
TTTTCTCTTTCGCTTGGCCTTTCGTTTTGTTTTCCCTTCCCGTTGTCTCT
CGTCCGAAATCGGCTCGCCGCCCTACGTCGTCCTCTAGCTTCCCACGCTC
CGCCGCCGCCGCCGCGACTCATTTTTTCGTTTCATTTTTCTCTCTCTCTT
CCTTCCGGGGTGCAGCAGGGAGGCATGCCGCAGGCGGGCATGCAGCAGCA
AGGATTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTTACGG
GCGGCATGGTGCAGCAGCAGCCCCAGCAGCCCCAGCAGCAGCAGCAGCAA
CCCTTCGGTGTTCAGCAGGGAGCATCGCAGCAGCAAGCTCTCGTGCCCTA
CGGAAGTCAACCCGGTGAGCTCATGTCACTGTAGCCGTAGCGACACAGCA
GTAGCAGCAGCAGCTGTTCTGCGCCTCGGACATGGGCGACGAAGGCGGAG
GCGTCAAGAGGCAGAAGAGGCGTGCTTCGACACCAAGCGAAAAGGACGCT
CCCGAAACCGCTTCCTTAGCTTTCCCTGAAGATTGCGTGGCTCGCGTGGT
TTTGTGAGTGATCGCTGGTGCTAGCCTCAGTGCCATCGTCTTTCTTCAAG
ATACGGACACATGTAAATACCATGTGTAGGTATCGGACCAAGAAGAGGAG
TGAGTTTTCCTCGACGTCGGAAGGGTGGCTTCCTCGCACTGCCCAGTTTG
TCGAGCTCAGCAGGACACCGCACCAAGCAGGAAGTCGTGCAGTCATGTAC
CTGGTGTTGGGCTTTGTTCGTGCGCTCCCGTCGAAGGTGCGCCACGGGTA
AAGCTGGAGGCCTGTGCCTGCCTAGCCAGTGGCGGAGGCGTTGATCGCCA
AGTTCGACGATAGGTATTCGTGCACCTCTCCCCTTTTTCGCATTTCCCCT
TTCGGGCATGCCCTCAACCAGCCCCGCCAAACCTCCTGCACCCTTTCCCC
TGGCAGCCCAACCCCAGCAGCAGCAAGGAACGCAGCAAGGATTGCTCTCG
CTCGGGCCGTCCACGACGTCTGCCGTCGACCCTTTCGCTCCCTCCGCCGG
AGTCGGAGGCGGCGGCGGGAGTGGGGGAGGCTTTCTCGCTCTCCCCTCGT
CCCAGACGTCCGCCTCTAATGCCTTCGGCGCCAACAGCACGAGCACCACC
AACAACCCGTTCCAGCAGCAGCAGCAGGGCGGATTCGCCCCAGCGACTCA
GCAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGCAGCACCAGC
ACCAGCAGAACCAAGTGCTCGCGAGTGCTGCGAACCCGTTCTCGAACCAG
CTGGCCCCGGTCCCCGTCGGTTTCAACGGCGGTGGTGGTGCGAGCGGCGG
CGGCGGCGGCGGTTGGGATCCGTTCACGAGCACGCCGTCGCAGCCGCAGC
AACAGCCGTACCAGCAGCAGCAGCAGCAGACGCAGCCCCAGCCCCAGCCG
CAGCAGCAGCAGCAACCGGTGAGTAGCATGTTGCAGCTTTCCCTTAAGAG
CATGCCTGCTGTCGGCCGTGTTTTCCCTCCGTTGCAGGCCTGGTGGTGGT
CCACTCGCTCGAATGATGATTTTTACGTGTCGTCTCTGGCGGGCACGATT
TTGCACGCTGGGCGACGCTTGTCGAAAGATGGGACGGTGGGAGAAGCACA
AGCCTCCGTGATCACTCCTCTCTGAGGACCGTGAGGCGCTAGCAAGAGTA
GCGACGGGTGCGATCTTATGTTCGGCTCCTCTCGTTGTGAAAACCAAAAT
GCAGTCTGTACTCCAGGATCTGCGCGATGGAGCACCTGTCTCGCTTGTCC
TTGCCAGGCACGGGATGGTTGCAAAGCTTCTTGTCTACTTTGGCACGCAT
GCGCTGAGCGTGTTTGCGTACATTGGCGGAGTGGGACATGGCGCGCGTGA
CTCAGCTTACTACATCGAAGCACCCCCCTCCCCTGAATCCTCTTCCGGAC
CCCCCCTCCGGACCCCCCCTCCAGACTGGAGGAGCGTGGGACCCTTTCGC
GCCAGGCCCTCCGGCCAATGGACAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGGCGCCCCAGCCAGTAGATGACTGGGGGCTTGGTGAACTGACC
GATGCGGAAATCTGGGGCAACCTGCCCACCAGGAAGGAAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12736:821..3412-

>mRNA_H-canaliculatus_F_contig12736.2281.1 ID=mRNA_H-canaliculatus_F_contig12736.2281.1|Name=mRNA_H-canaliculatus_F_contig12736.2281.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2130bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12736:821..3412- (Hapterophycus canaliculatus Oshoro5f female)
TCCGTGGACCCATACGACCCCAACGGGGGAGTGATGTCTGCGGCTTTGGT
GCCCTTCGGCACCAGCAACGACGACGGCGGGTACGGGGGCGGCGCGGGCG
GGGGCGGGGCTAATGACGGAAGCTTTGGAGGAGGAGGAGGAGGCGGGGGA
GGGCAGCAGTGGCAGCAGCAGCAGCCCCAACAGCAGTCCGTGGACCCATA
CGACCCCAACGGGGGAGTGATGTCTGCGGCTTTGGTGCCCTTCGGCACCA
GCAACGACGACGGCGGGTACGGGGGCGGCGCGGGCGGGGGCGGGGCTAAT
GACGGAAGCTTTGGAGGAGGAGGAGGAGGCGGGGGAGGGCAGCAGTGGCA
GCAGCAGCAGCCCCAACAGCAGCAGGGAGGCATGCCGCAGGCGGGCATGC
AGCAGCAAGGATTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
TTTACGGGCGGCATGGTGCAGCAGCAGCCCCAGCAGCCCCAGCAGCAGCA
GCAGCAACCCTTCGGTGTTCAGCAGGGAGCATCGCAGCAGCAAGCTCTCG
TGCCCTACGGAAGTCAACCCGCAGGGAGGCATGCCGCAGGCGGGCATGCA
GCAGCAAGGATTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAT
TTACGGGCGGCATGGTGCAGCAGCAGCCCCAGCAGCCCCAGCAGCAGCAG
CAGCAACCCTTCGGTGTTCAGCAGGGAGCATCGCAGCAGCAAGCTCTCGT
GCCCTACGGAAGTCAACCCGCCCAACCCCAGCAGCAGCAAGGAACGCAGC
AAGGATTGCTCTCGCTCGGGCCGTCCACGACGTCTGCCGTCGACCCTTTC
GCTCCCTCCGCCGGAGTCGGAGGCGGCGGCGGGAGTGGGGGAGGCTTTCT
CGCTCTCCCCTCGTCCCAGACGTCCGCCTCTAATGCCTTCGGCGCCAACA
GCACGAGCACCACCAACAACCCGTTCCAGCAGCAGCAGCAGGGCGGATTC
GCCCCAGCGACTCAGCAGCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GTTGCAGCACCAGCACCAGCAGAACCAAGTGCTCGCGAGTGCTGCGAACC
CGTTCTCGAACCAGCTGGCCCCGGTCCCCGTCGGTTTCAACGGCGGTGGT
GGTGCGAGCGGCGGCGGCGGCGGCGGTTGGGATCCGTTCACGAGCACGCC
GTCGCAGCCGCAGCAACAGCCGTACCAGCAGCAGCAGCAGCAGACGCAGC
CCCAGCCCCAGCCGCAGCAGCAGCAGCAACCGCCCAACCCCAGCAGCAGC
AAGGAACGCAGCAAGGATTGCTCTCGCTCGGGCCGTCCACGACGTCTGCC
GTCGACCCTTTCGCTCCCTCCGCCGGAGTCGGAGGCGGCGGCGGGAGTGG
GGGAGGCTTTCTCGCTCTCCCCTCGTCCCAGACGTCCGCCTCTAATGCCT
TCGGCGCCAACAGCACGAGCACCACCAACAACCCGTTCCAGCAGCAGCAG
CAGGGCGGATTCGCCCCAGCGACTCAGCAGCCCCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGTTGCAGCACCAGCACCAGCAGAACCAAGTGCTCGCGA
GTGCTGCGAACCCGTTCTCGAACCAGCTGGCCCCGGTCCCCGTCGGTTTC
AACGGCGGTGGTGGTGCGAGCGGCGGCGGCGGCGGCGGTTGGGATCCGTT
CACGAGCACGCCGTCGCAGCCGCAGCAACAGCCGTACCAGCAGCAGCAGC
AGCAGACGCAGCCCCAGCCCCAGCCGCAGCAGCAGCAGCAACCGACTGGA
GGAGCGTGGGACCCTTTCGCGCCAGGCCCTCCGGCCAATGGACAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGCCCCAGCCAGTAGATGACT
GGGGGCTTGGTGAACTGACCGATGCGGAAATCTGGGGCAACCTGCCCACC
AGGAAGGAAACCACTGGAGGAGCGTGGGACCCTTTCGCGCCAGGCCCTCC
GGCCAATGGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGC
CCCAGCCAGTAGATGACTGGGGGCTTGGTGAACTGACCGATGCGGAAATC
TGGGGCAACCTGCCCACCAGGAAGGAAACC
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