mRNA_H-canaliculatus_F_contig12734.2278.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12734.2278.1
Unique NamemRNA_H-canaliculatus_F_contig12734.2278.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12734.2278.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12734contigH-canaliculatus_F_contig12734:2289..2642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12734.2278.1prot_H-canaliculatus_F_contig12734.2278.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12734 2289..2513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.339764-CDS-H-canaliculatus_F_contig12734:2288..24121622928994.339764-CDS-H-canaliculatus_F_contig12734:2288..2412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12734 2289..2412 +
1696845642.5503855-CDS-H-canaliculatus_F_contig12734:2288..24121696845642.5503855-CDS-H-canaliculatus_F_contig12734:2288..2412Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12734 2289..2412 +
1622928994.5800571-CDS-H-canaliculatus_F_contig12734:2421..25131622928994.5800571-CDS-H-canaliculatus_F_contig12734:2421..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12734 2422..2513 +
1696845642.5609145-CDS-H-canaliculatus_F_contig12734:2421..25131696845642.5609145-CDS-H-canaliculatus_F_contig12734:2421..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12734 2422..2513 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.5925736-UTR-H-canaliculatus_F_contig12734:2513..26421622928994.5925736-UTR-H-canaliculatus_F_contig12734:2513..2642Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12734 2514..2642 +
1696845642.5700223-UTR-H-canaliculatus_F_contig12734:2513..26421696845642.5700223-UTR-H-canaliculatus_F_contig12734:2513..2642Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12734 2514..2642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12734.2278.1

>prot_H-canaliculatus_F_contig12734.2278.1 ID=prot_H-canaliculatus_F_contig12734.2278.1|Name=mRNA_H-canaliculatus_F_contig12734.2278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=72bp
MKRPKPDVLHLHGYSPRHLIARSKWVEQRSGLELSGRKAQHEHGRARHGT
PLRSVGERSEAVLDEEHGARQ*
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mRNA from alignment at H-canaliculatus_F_contig12734:2289..2642+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12734.2278.1 ID=mRNA_H-canaliculatus_F_contig12734.2278.1|Name=mRNA_H-canaliculatus_F_contig12734.2278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=354bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12734:2289..2642+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAGACCAAAACCTGATGTACTCCACTTACACGGCTACAGTCCCAG
GCACCTCATCGCCCGGAGTAAGTGGGTCGAACAGCGCAGCGGATTAGAAC
TGAGCGGTAGGAAGGCACAGCATGGCATGGCAGAGCATGGCAGAGCACGA
CACGGCACGCCACTACGCAGCGTAGGGGAGCGCAGTGAAGCAGTGCTAGA
CGAAGAGCACGGAGCACGGCAATGACGTGATACGCCGCACGACGACTGTC
CTGTCTATCGTTTGCAGGTTGATGTGCGCCGGACAGCTACACGTCTCGCG
GGATGCCTGGACCTGGCAAGAAGCTGCGGCCGCCGAGCTTTACGAGACGG
CCAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12734:2289..2642+

>mRNA_H-canaliculatus_F_contig12734.2278.1 ID=mRNA_H-canaliculatus_F_contig12734.2278.1|Name=mRNA_H-canaliculatus_F_contig12734.2278.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=432bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12734:2289..2642+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAGAGACCAAAACCTGATGTACTCCACTTACACGGCTACAGTCCCAG
GCACCTCATCGCCCGGAGTAAGTGGGTCGAACAGCGCAGCGGATTAGAAC
TGAGCGGTAGGAAGGCACAGCATGATGAAGAGACCAAAACCTGATGTACT
CCACTTACACGGCTACAGTCCCAGGCACCTCATCGCCCGGAGTAAGTGGG
TCGAACAGCGCAGCGGATTAGAACTGAGCGGTAGGAAGGCACAGCATGAG
CATGGCAGAGCACGACACGGCACGCCACTACGCAGCGTAGGGGAGCGCAG
TGAAGCAGTGCTAGACGAAGAGCACGGAGCACGGCAATGAAGCATGGCAG
AGCACGACACGGCACGCCACTACGCAGCGTAGGGGAGCGCAGTGAAGCAG
TGCTAGACGAAGAGCACGGAGCACGGCAATGA
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