mRNA_H-canaliculatus_F_contig12711.2263.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12711.2263.1
Unique NamemRNA_H-canaliculatus_F_contig12711.2263.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 2.580e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            VLNVDFPPT SSYTHRVGRTARGGASGTALSLVL+KDEKQCRTLQRVQ
Sbjct:  555 VLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQ 602
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-21
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            VLNVDFPPT SSYTHRVGRTARGGASGTALSLVL+KDEKQCRTLQRVQ
Sbjct:  498 VLNVDFPPTASSYTHRVGRTARGGASGTALSLVLAKDEKQCRTLQRVQ 545
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A421GZS4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZS4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.720e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQVR 150
            V+NVDFP +  +YTHR+GRTARGGASGTALSLV   D KQ R L+RVQ R
Sbjct:  413 VINVDFPKSVRAYTHRIGRTARGGASGTALSLVSKDDAKQERALKRVQAR 462
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A662YEI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEI0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.730e-13
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQVR 150
            V+NVDFP +  +YTHR+GRTARGGASGTALSLV   D KQ R L+RVQ R
Sbjct:  454 VINVDFPTSVRAYTHRIGRTARGGASGTALSLVAKGDAKQERALKRVQAR 503
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A6V2D6B0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2D6B0_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.650e-13
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            V+NVDFPP   SYTHR+GRTARGGASG ALSLV ++ E+Q   LQ+VQ
Sbjct:  134 VVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQ 181
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: M4BKX7_HYAAE (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=M4BKX7_HYAAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.820e-13
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQVR 150
            V+NVDFP +  +YTHR+GRTARGGASGTALSLV  +D K+ R L+RVQ +
Sbjct:  457 VINVDFPKSVRAYTHRIGRTARGGASGTALSLVAKEDSKEERALKRVQAK 506
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A7S4VQY4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VQY4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 8.820e-13
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            V+NVDFPP   SYTHR+GRTARGGASG ALSLV ++ E+Q   LQ+VQ
Sbjct:  404 VVNVDFPPNSKSYTHRIGRTARGGASGVALSLVEAESEEQLEALQQVQ 451
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A2P4WWL1_9STRA (DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWL1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.530e-12
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQVR 150
            V+NVDFP +  +YTHR+GRTARGGASGTALSLV  +D K+ R L+RVQ +
Sbjct:   52 VINVDFPKSVRAYTHRIGRTARGGASGTALSLVSKEDAKEERALKRVQAK 101
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A2D4BSN8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BSN8_PYTIN)

HSP 1 Score: 68.9 bits (167), Expect = 2.250e-12
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            V+NVDFP +  SYTHR+GRTARGGA+GTALSLV   D K  R LQRVQ
Sbjct:  458 VINVDFPRSVRSYTHRIGRTARGGANGTALSLVAQADPKDERALQRVQ 505
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BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Match: A0A5D6XSV1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XSV1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.750e-12
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQ 144
            V+NVDFP +  +YTHR+GRTARGGA+GTALSLV   D KQ R L RVQ
Sbjct:  409 VINVDFPKSVRAYTHRIGRTARGGANGTALSLVGRGDSKQARALARVQ 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12711.2263.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX88_9PHAE2.580e-2195.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE7_ECTSI2.600e-2195.83DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A421GZS4_9STRA4.720e-1370.00Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A662YEI0_9STRA4.730e-1370.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A6V2D6B0_9STRA8.650e-1368.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
M4BKX7_HYAAE8.820e-1366.00Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A7S4VQY4_9STRA8.820e-1368.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2P4WWL1_9STRA1.530e-1266.00DEAD/DEAH box RNA helicase n=1 Tax=Phytophthora pa... [more]
A0A2D4BSN8_PYTIN2.250e-1270.83Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6XSV1_9STRA5.750e-1268.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12711contigH-canaliculatus_F_contig12711:3188..3337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue7.4e-18
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-22_001460.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.9640253-CDS-H-canaliculatus_F_contig12711:3187..33371622928992.9640253-CDS-H-canaliculatus_F_contig12711:3187..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12711 3188..3337 -
1696845641.956078-CDS-H-canaliculatus_F_contig12711:3187..33371696845641.956078-CDS-H-canaliculatus_F_contig12711:3187..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12711 3188..3337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12711.2263.1prot_H-canaliculatus_F_contig12711.2263.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12711 3188..3337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12711.2263.1

>prot_H-canaliculatus_F_contig12711.2263.1 ID=prot_H-canaliculatus_F_contig12711.2263.1|Name=mRNA_H-canaliculatus_F_contig12711.2263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=50bp
VLNVDFPPTPSSYTHRVGRTARGGASGTALSLVLSKDEKQCRTLQRVQVR
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mRNA from alignment at H-canaliculatus_F_contig12711:3188..3337-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12711.2263.1 ID=mRNA_H-canaliculatus_F_contig12711.2263.1|Name=mRNA_H-canaliculatus_F_contig12711.2263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=150bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12711:3188..3337- (Hapterophycus canaliculatus Oshoro5f female)
GTACTCAACGTGGACTTCCCCCCGACCCCTTCGAGCTACACGCACCGCGT
GGGCCGCACGGCGAGGGGTGGGGCCAGCGGCACCGCTCTCAGCCTGGTTC
TGAGCAAGGACGAGAAGCAGTGCCGGACGCTACAGCGTGTGCAGGTGCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12711:3188..3337-

>mRNA_H-canaliculatus_F_contig12711.2263.1 ID=mRNA_H-canaliculatus_F_contig12711.2263.1|Name=mRNA_H-canaliculatus_F_contig12711.2263.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=300bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12711:3188..3337- (Hapterophycus canaliculatus Oshoro5f female)
GTACTCAACGTGGACTTCCCCCCGACCCCTTCGAGCTACACGCACCGCGT
GGGCCGCACGGCGAGGGGTGGGGCCAGCGGCACCGCTCTCAGCCTGGTTC
TGAGCAAGGACGAGAAGCAGTGCCGGACGCTACAGCGTGTGCAGGTGCGT
GTACTCAACGTGGACTTCCCCCCGACCCCTTCGAGCTACACGCACCGCGT
GGGCCGCACGGCGAGGGGTGGGGCCAGCGGCACCGCTCTCAGCCTGGTTC
TGAGCAAGGACGAGAAGCAGTGCCGGACGCTACAGCGTGTGCAGGTGCGT
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