mRNA_H-canaliculatus_F_contig1271.2262.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1271.2262.1
Unique NamemRNA_H-canaliculatus_F_contig1271.2262.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A6H5J663_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J663_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.150e-80
Identity = 134/163 (82.21%), Postives = 152/163 (93.25%), Query Frame = 3 
Query: 2028 TVRRTRGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            ++   RGLFSSSL EH +LSCLYFAKDVDRWKRNQR+RKWDQFCV+EV GTTLGV+GYGDIGQAAA +AKAMGM+I+AQRRRPELS+GDG+ADEVLGA QVG+VI KSDYI+VAAALTPET GMVGAAELA A+PH+VIIN+GRGPLIDEEAMT+ML+DGRLR
Sbjct:  112 SLTNARGLFSSSLAEHAVLSCLYFAKDVDRWKRNQRDRKWDQFCVSEVFGTTLGVVGYGDIGQAAAVKAKAMGMKIIAQRRRPELSRGDGVADEVLGAGQVGEVIAKSDYILVAAALTPETTGMVGAAELAMARPHAVIINIGRGPLIDEEAMTQMLRDGRLR 274
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BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A6H5KFZ0_9PHAE (2-Hacid_dh_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFZ0_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 2.960e-71
Identity = 123/163 (75.46%), Postives = 146/163 (89.57%), Query Frame = 3 
Query: 2028 TVRRTRGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            ++   RGLF+S+L EHV+LSCLYFAKDVDRWKRNQ+ RKW+++ V EV+ TTLG+IGYGDIG+AAA +AKAMGM+I+AQRRRPELS GDGIAD+V GA QVGDVI +SDYI+VAAALTP T GMVGA EL+RAKPH+VII++GRGPLIDE AMT+MLQDGRLR
Sbjct:  111 SLTNARGLFASALAEHVVLSCLYFAKDVDRWKRNQKCRKWERYHVAEVSRTTLGIIGYGDIGRAAAVKAKAMGMKIIAQRRRPELSIGDGIADQVFGAGQVGDVIAQSDYILVAAALTPATMGMVGAEELSRAKPHAVIISIGRGPLIDEVAMTQMLQDGRLR 273
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BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A835Z904_9STRA (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z904_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.350e-59
Identity = 106/158 (67.09%), Postives = 132/158 (83.54%), Query Frame = 3 
Query: 2043 RGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            RGLFSS+L E+V L+CLYFAKDVDRWK  QR+R W++F V E+ G TLGV+GYGDIGQ+AAR AKA+GMR++AQRR    +  DG+ADE  G D VGDV+ +SDY+ VAAALTPET+GM+GAA LARA+PH+VIINVGRGPLIDE A+ + L++GR+R
Sbjct:  106 RGLFSSALAEYVALACLYFAKDVDRWKAQQRDRVWEKFVVQEIRGQTLGVLGYGDIGQSAARLAKALGMRVIAQRRNAA-APPDGVADETFGPDGVGDVVARSDYVCVAAALTPETRGMLGAAALARARPHTVIINVGRGPLIDEAALAEALREGRVR 262
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: I2CQU9_NANGC (D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQU9_NANGC)

HSP 1 Score: 186 bits (471), Expect = 1.000e-47
Identity = 90/158 (56.96%), Postives = 124/158 (78.48%), Query Frame = 3 
Query: 2043 RGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            RGLFSSSL E+ +L+  YFAKD+ R    + E+KW+++CV E+ G TLG++GYGDIGQA  R AKA GMR+VA +RRPEL   DGIAD VLG +++ ++I +SDY++VAAALTP+T+G++ A ELA AKP  VIIN+GRGPL+ EE + + L++GR++
Sbjct:  186 RGLFSSSLAEYGVLAMSYFAKDLPRLLAQKAEKKWERYCVEELRGATLGIVGYGDIGQACGRLAKAFGMRVVALKRRPELGGKDGIADAVLGREKIDELIAQSDYLIVAAALTPDTRGIISAKELASAKPSLVIINMGRGPLLVEEDVIEALREGRVK 343
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BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A7X2TRU1_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A7X2TRU1_9BACT)

HSP 1 Score: 178 bits (451), Expect = 5.570e-46
Identity = 88/157 (56.05%), Postives = 116/157 (73.89%), Query Frame = 3 
Query: 2046 GLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            G+FS SLGE V  + LYFAKD  R  RNQ   +W+QF V EV G T+G++GYGDIG+AAA R KA+GMR++A RRRPE SQGDG+ DEV G D++ D++ +SDY+V AA LTPET+G++G   +A  K   V++NVGRGP+IDE A+   L + R+R
Sbjct:  100 GVFSRSLGEFVAAAALYFAKDFRRMIRNQAAGRWEQFDVEEVYGKTMGIVGYGDIGRAAAERGKALGMRVIALRRRPEKSQGDGLIDEVFGPDRLLDLMSESDYVVAAAPLTPETKGLIGVEAIASMKSTGVLMNVGRGPVIDEAALIAALIEKRIR 256
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BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: UPI0015D6F199 (D-2-hydroxyacid dehydrogenase n=1 Tax=Nevskia soli TaxID=418856 RepID=UPI0015D6F199)

HSP 1 Score: 175 bits (443), Expect = 6.330e-45
Identity = 88/182 (48.35%), Postives = 125/182 (68.68%), Query Frame = 3 
Query: 1971 FAALSMLCCPVLLFCARASTVRRTRGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            +A L  L  P L+  A    +  +RG++S SLGE V+   L+FAKD+ R  R+Q   +W  F + E+ G T+G++GYGDIG+A A RA AMGMR++AQRRRPE + GD + D   G D + D+I + DY+V AA LTPET+GM+GA E+A  KP +V++NVGRGP+IDE+++   L+  R+R
Sbjct:   75 WAGLDSLLFPALV--ASPVVITNSRGVYSQSLGEFVMAGALFFAKDIRRLLRDQEGHRWSPFTMLELRGATMGIVGYGDIGRACATRAHAMGMRVLAQRRRPERASGDPLLDRAYGPDGLLDMIRECDYVVAAAPLTPETKGMIGAREIAAMKPSAVLMNVGRGPVIDEDSLVDALRSRRIR 254
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A3D1ARK2_9BACT (Hydroxyacid dehydrogenase n=1 Tax=Bryobacterales bacterium TaxID=2026791 RepID=A0A3D1ARK2_9BACT)

HSP 1 Score: 170 bits (431), Expect = 4.940e-43
Identity = 83/157 (52.87%), Postives = 117/157 (74.52%), Query Frame = 3 
Query: 2043 RGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRL 2513
            RG+FS SLGE VIL  L+FAKDV R  R+Q   KWD F VTE+ G T+G++GYGDIG+AAA+RA+AM MRI+A RR+P+ SQ D + ++  G D +G+++ + DY+V AA LTP T+ ++  A+  + KP +V++NVGRGP+IDE A+ + LQ+G L
Sbjct:  122 RGVFSQSLGEFVILGMLFFAKDVRRLLRSQAAAKWDPFTVTELRGQTVGIVGYGDIGRAAAQRARAMHMRILAVRRQPQKSQNDPLVEQTFGLDGLGEMLPQCDYVVCAAPLTPATKHLMSRAQFRQMKPGAVVLNVGRGPVIDEAALIEALQEGHL 278
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A7Y5GF20_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7Y5GF20_9BACT)

HSP 1 Score: 168 bits (425), Expect = 1.660e-42
Identity = 82/165 (49.70%), Postives = 121/165 (73.33%), Query Frame = 3 
Query: 2022 ASTVRRTRGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            A+ +  +RG+F+ SLGE VI S L+FAK++ R  R Q+E  W  F V E+ G T+G++GYG+IG+AAA RA A+GM+ +A RRRPELS GD + D  LG D + +++ ++DY+VV+AALTP T+GM+G AEL   K  +V+INVGRGP++ E A+ + L++ R++
Sbjct:   90 AAVMTNSRGVFARSLGEFVIASVLFFAKEMRRMVRQQQEGVWAPFDVEEIHGQTMGIVGYGEIGRAAAERAHALGMKTIALRRRPELSGGDPLVDRALGPDGLFNLLREADYVVVSAALTPSTRGMIGEAELNAMKRSAVLINVGRGPVVVESALVRALRENRIK 254
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A7V2HCJ3_9BACT (D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7V2HCJ3_9BACT)

HSP 1 Score: 167 bits (423), Expect = 1.220e-41
Identity = 84/158 (53.16%), Postives = 112/158 (70.89%), Query Frame = 3 
Query: 2043 RGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            RG FS SLGE V+   L+F+K +D  +R QRE +W    V E+ G TLG++ YG IGQAAAR AKA GM + A RRRPELS GD + D V G   + +++  SD++ V + LTPET+G+VGAAELA  KP +VI+NVGRGP+IDE A+ + L++ R+R
Sbjct:  153 RGAFSRSLGEFVLCGALFFSKKIDEMRRQQREHRWVNMDVGELHGATLGIVSYGSIGQAAARLAKAFGMTVWAMRRRPELSAGDPLVDRVFGPGGLKEMLAGSDFVAVCSPLTPETRGLVGAAELAVMKPSAVIMNVGRGPVIDEAALIEALREKRIR 310
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Match: A0A2V8VAW8_9BACT (Hydroxyacid dehydrogenase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8VAW8_9BACT)

HSP 1 Score: 165 bits (418), Expect = 1.440e-41
Identity = 84/159 (52.83%), Postives = 113/159 (71.07%), Query Frame = 3 
Query: 2040 TRGLFSSSLGEHVILSCLYFAKDVDRWKRNQRERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELSQGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPHSVIINVGRGPLIDEEAMTKMLQDGRLR 2516
            +RG+FS  LGE VI + ++FAKD  R   +     WDQF +TEV G TLG+IGYGDIG+A A RA A+GM++VA RRRPELS  D    EVLGA+Q  +++ +SDY+V+   LTP+TQGM+G  E A  KP +V+IN+GRG L+DE A+ + L+  R+R
Sbjct:   96 SRGVFSGPLGEFVIGAVMFFAKDFRRMALSHMRGVWDQFDITEVAGQTLGIIGYGDIGRAVASRAHALGMKVVALRRRPELSGDDPNVREVLGANQKYELLARSDYVVMVTPLTPKTQGMIGKPEFAAMKPGAVLINIGRGLLVDERALVEALEKKRIR 254
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1271.2262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J663_9PHAE1.150e-8082.212-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A6H5KFZ0_9PHAE2.960e-7175.462-Hacid_dh_C domain-containing protein n=2 Tax=Ect... [more]
A0A835Z904_9STRA1.350e-5967.09D-isomer specific 2-hydroxyacid dehydrogenase n=1 ... [more]
I2CQU9_NANGC1.000e-4756.96D-isomer specific 2-hydroxyacid dehydrogenase n=1 ... [more]
A0A7X2TRU1_9BACT5.570e-4656.05D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacteral... [more]
UPI0015D6F1996.330e-4548.35D-2-hydroxyacid dehydrogenase n=1 Tax=Nevskia soli... [more]
A0A3D1ARK2_9BACT4.940e-4352.87Hydroxyacid dehydrogenase n=1 Tax=Bryobacterales b... [more]
A0A7Y5GF20_9BACT1.660e-4249.70D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterac... [more]
A0A7V2HCJ3_9BACT1.220e-4153.16D-2-hydroxyacid dehydrogenase n=1 Tax=Bryobacterac... [more]
A0A2V8VAW8_9BACT1.440e-4152.83Hydroxyacid dehydrogenase n=1 Tax=Acidobacteria ba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1271contigH-canaliculatus_F_contig1271:18752..25471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score270.0
Seed ortholog evalue1.2e-69
Seed eggNOG ortholog2880.D8LGJ7
EggNOG free text desc.hydroxypyruvate reductase activity
EggNOG OGsCOG1052@1,KOG0069@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionD-isomer specific 2-hydroxyacid dehydrogenase
Ec32 orthologEc-10_001810.2
Exons8
Model size2807
Cds size822
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.8119254-CDS-H-canaliculatus_F_contig1271:18751..191351622928992.8119254-CDS-H-canaliculatus_F_contig1271:18751..19135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 18752..19135 -
1696845641.8559065-CDS-H-canaliculatus_F_contig1271:18751..191351696845641.8559065-CDS-H-canaliculatus_F_contig1271:18751..19135Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 18752..19135 -
1622928992.8271322-CDS-H-canaliculatus_F_contig1271:20220..203161622928992.8271322-CDS-H-canaliculatus_F_contig1271:20220..20316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 20221..20316 -
1696845641.8713663-CDS-H-canaliculatus_F_contig1271:20220..203161696845641.8713663-CDS-H-canaliculatus_F_contig1271:20220..20316Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 20221..20316 -
1622928992.8399847-CDS-H-canaliculatus_F_contig1271:21155..213141622928992.8399847-CDS-H-canaliculatus_F_contig1271:21155..21314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 21156..21314 -
1696845641.8849814-CDS-H-canaliculatus_F_contig1271:21155..213141696845641.8849814-CDS-H-canaliculatus_F_contig1271:21155..21314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 21156..21314 -
1622928992.8556328-CDS-H-canaliculatus_F_contig1271:21626..217501622928992.8556328-CDS-H-canaliculatus_F_contig1271:21626..21750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 21627..21750 -
1696845641.8952894-CDS-H-canaliculatus_F_contig1271:21626..217501696845641.8952894-CDS-H-canaliculatus_F_contig1271:21626..21750Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 21627..21750 -
1622928992.8710372-CDS-H-canaliculatus_F_contig1271:22200..222591622928992.8710372-CDS-H-canaliculatus_F_contig1271:22200..22259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 22201..22259 -
1696845641.9045556-CDS-H-canaliculatus_F_contig1271:22200..222591696845641.9045556-CDS-H-canaliculatus_F_contig1271:22200..22259Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1271 22201..22259 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.8830502-UTR-H-canaliculatus_F_contig1271:22259..225801622928992.8830502-UTR-H-canaliculatus_F_contig1271:22259..22580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 22260..22580 -
1696845641.913768-UTR-H-canaliculatus_F_contig1271:22259..225801696845641.913768-UTR-H-canaliculatus_F_contig1271:22259..22580Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 22260..22580 -
1622928992.8962917-UTR-H-canaliculatus_F_contig1271:22742..229831622928992.8962917-UTR-H-canaliculatus_F_contig1271:22742..22983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 22743..22983 -
1696845641.9250154-UTR-H-canaliculatus_F_contig1271:22742..229831696845641.9250154-UTR-H-canaliculatus_F_contig1271:22742..22983Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 22743..22983 -
1622928992.9057956-UTR-H-canaliculatus_F_contig1271:23928..241631622928992.9057956-UTR-H-canaliculatus_F_contig1271:23928..24163Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 23929..24163 -
1696845641.9342983-UTR-H-canaliculatus_F_contig1271:23928..241631696845641.9342983-UTR-H-canaliculatus_F_contig1271:23928..24163Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 23929..24163 -
1622928992.9167662-UTR-H-canaliculatus_F_contig1271:24283..254711622928992.9167662-UTR-H-canaliculatus_F_contig1271:24283..25471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 24284..25471 -
1696845641.9443343-UTR-H-canaliculatus_F_contig1271:24283..254711696845641.9443343-UTR-H-canaliculatus_F_contig1271:24283..25471Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1271 24284..25471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1271.2262.1prot_H-canaliculatus_F_contig1271.2262.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1271 18752..22259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1271.2262.1

>prot_H-canaliculatus_F_contig1271.2262.1 ID=prot_H-canaliculatus_F_contig1271.2262.1|Name=mRNA_H-canaliculatus_F_contig1271.2262.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=274bp
MLCCPVLLFCARASTVRRTRGLFSSSLGEHVILSCLYFAKDVDRWKRNQR
ERKWDQFCVTEVTGTTLGVIGYGDIGQAAARRAKAMGMRIVAQRRRPELS
QGDGIADEVLGADQVGDVIEKSDYIVVAAALTPETQGMVGAAELARAKPH
SVIINVGRGPLIDEEAMTKMLQDGRLRSEHSELSWFPCRCQPSPVVARAV
VGRRSSRLLHLCARSSNISSTSKRDLTSNLVFCTEYFVRLSGEVTAVPVL
SRRHPLIASRRTFVLVPPPPPRPA
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mRNA from alignment at H-canaliculatus_F_contig1271:18752..25471-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1271.2262.1 ID=mRNA_H-canaliculatus_F_contig1271.2262.1|Name=mRNA_H-canaliculatus_F_contig1271.2262.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=6720bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1271:18752..25471- (Hapterophycus canaliculatus Oshoro5f female)
GCTGTGCGCGTAGGATATATTGCGACCAACTGGATAAACGGAAGGATTGA
GGCTGTGGTACAGAAATGGGATACTCCTGCAAGTGAGATGGCCAAGAAAT
GTTTCGGGCCGGGATACATGGATTGAATGCTGCGAATATGAAACCTTGCA
CTCGGAACATTTTACATCTTGCCGAGTAGGCTGAACACCTGAGTCACCCC
GCATCGTCTTTGCTCTCTCCTCTCTCCCTTCTTGTCGACAGGAAAGCATC
GCTCTGCCCATCTTGCGTCTTTGGCCTGCTATCCTCGTTTCTGAGTGCCT
ATTAGTACCTAGATGAGTATGAACAGACGGATATTGCCTCTCGAAACGAG
ACTCTTCTCCTACTCCACTGCGACGTGGAAAGGAGAAAAGAGTGTGTCCC
GATCGGGGGTCGAACGGGATGTTGATGATGCCTTCATGTGCAACATGATC
AACACGTGCATCGCGAAAGGTCATCGACACTGATTGCTCCACCTCCACAA
AGTAAAGAAAATTGCGGCTCGGCAGAGTAGCACCCCCTAGGAGGTGGAAG
AGCTCTTCGCCACGAAAGGATAGCTAGATGAGGAGGGAATTGCTCTGGCA
TGCCGCAGCTGAGGGTGTTGCTTCAATTCGTCTCGAGGGTAGAAAAGTTG
ATTCAGAGTAGTTCGCGAGGCAAACTTCTGGAAATCACAACCTTGACATA
AACTTTTTGTTCCCGCAAAAACCGGTACCAGGGTATTAGTTTTGATCTTG
ACGCGTCTCAACGCTATCGATACTGCGCATTCTGCACAGCAGTATTTCGC
ACGGGAGTATCACATACAGATTGTTGAAAGAGTATTGCAAACAACGAGGA
ATGGATGCAGTACCGGCTCGCTCGTTAGAAAAAAAAACTGACTGCTCCCT
CTAAGGAAGCGAACAGAAATCCCTCACGAGCGGGCCGTTACTCTGTACCC
TCATGTACCCTCATGAAGCGTCTCATGACGCACCCCACAAGGTCGTGCTG
AATTCCGTACAAGTACAGCAAGGATTCATTGCACTGCTCTTGTACATGGA
TGGGTTTGTTCCAAGTATGCCATCGCTGGGCGAATCGCTAGTATTGATTT
TCTAGCCTTGAGCGACGTATCTGCGTCTTGAACGCGGAGTCTACCAGGGT
GGGGCCCGCTGCTGCTTCGTTGGAGTGTGTTTCCAGAGCCAAACCCTTCT
TCCCACGTCCTAGGCGTCTTCTCTTCTTCTCTTCTTCTCTTCTTCTCAGC
AGTCAAAGGAGTCTCAGCAGCCCCTTCCCCCCTACAATGCACTTTTTTTC
TCCTCCTCGACGGGCTGCGGGCACCACCTCCTTCGTGCCCACGCGCCAGG
CTGGGCCCGGCGGCTGGAGGGCAGGCGAAGCTCGTGGTGGTCGCCAAAGA
GGGCGATCCTACCCTCGTAGAGCTCGAGCGCCTCCCGCAGGGCTCGTCGG
CCGTCCTGTTTCGAGGGAGCACGGCGGAGGAGTTCCTGACGGCCGAGGGG
CAGAAGGCTCTCGAGGAGGCGAATGTGCTCCTCAATTGCACGGGTGAGGG
AGGGGTAGAGAGGGGCAGAGAGGCAGGGAGCGAGACGGGGAGAGGCGGGA
AGACAGCAGTGGGAGGGACGAGAGACAAATACGAAGACAGAAGACAGGGG
TGGAGACAGAGAGACAGATAGGAGGAGAGCGGGTGGGCGAGGGAGGGAGC
GATGCGAGTGGGGTTGTGCTTGTCCAAGTGCACCCATCATGTTTTGTGCC
CAGGCGTAGGGTTGTTTCCTGGGGGTGGTCGGGGCAAGGGCGCTCTTCGG
TTGCGCTCGACGGTCGCGAAAGTATACGATGCACCAGGCGCTGACGCGAG
TAGGGGGAGCTTGAATTGGGCTTGCCGACGTGTCTGTCGTTCGCTTTGCG
CCGCCAGGTGCTTCCGTGAAGAACGGTAACCTCTGGCCGTCCAGCGCTCC
CGTGCGATGACAGCGTTTCTACAACAAGCTGCTGATCTTGACCATCTTGT
GACCGCCGCAGTCGGCTAGAACCAACTGCAGATCTTTCCTCTTGTCACCG
CTGCAGTAGCGGAGCTTTGCGGTGTTTGGCGTGTGGGGAGGAGGGGGCGG
GTGTCAACGGCTTTGATGCAGTGGCGGACCGAGCCGGGAGGGAGTTGTCG
AGAGCACCTTGTTGTCAGCCCGTTGAGGCAGTTGTGGGCGCATGGAACAG
CAGGGACAGCGTCGATTATTTTAAATAAAACAAGTCAACAACACCGAAGG
AATTTGCTCACCCGGCCAAGACTTCCAACATTCGCCCAAACAAAAAAGGT
TATCGTACCATCATAACATCATCCATCGCCCAGGGACAAAGACAGACGTT
CAGGGTAACACCGCGGCTCGAACCAACCCTCTTCCCTTCTAAGCCCCATC
CTTTGAACCCTCTGTTCTCCGGGCTGACGATACACCGAACCATGACTGAT
GACTTGATGTTGATGTGATGCTTGCGCGCGATTCACAGGCAAGAAGGATC
TCTTGAGCCAGCTGTTTCCCCTGGCGCCGAATCTTGTGTGGGTCCATAGC
CGGTCTACCGGGGTGGACAGCCTTCTCTTCCCCGCCTTGATTGAGGCCGA
CAGCGTGTCCCTGACCAATGCAAGGCGAGAAAATATAGTAGGCAGTGGAC
GATGCGACGTTTTGGTTGGGTGATGCAGTCCTTGGGTCCGGGTGCGGTAC
GCCATGTGTGCAGCGGGGGGTCGCGTTTGGGGGGGAGGTTCGTTCGAAGC
CCGCTGAACGCCGTTTCTCTCGAAGAAATCCGTTTCTCTTGATGCAGGGT
GCCCTTTTGCGGCCCACCTGAGACACAGTCCATCTCAGGGGGCTCATGTC
GTTTGTTTCAAATGTTGTTGTTTTTGCTGCTGCTGCTGTTGTTGTTGTTG
TTGTTGTTGTTGTTTTTCGGCGTTGCTGTTACCCCCTTTACCTCTTTTCG
CCTTTTCTGGTTTTGGTAATCGCAATCGCAAGCCGTGCGTATCCTCTGGG
CTGCTTTCGCCAGCACCCTCGCGCGTCCCATCGTACCAACAAAACCAAGG
AACGAAGCTTGTGCACGATCCGTGTGTACCAACGCTTGAGAGCAGGAGCA
GCAGCAGTTTTGACCTCGGTGTGACCATCTCACCTCCGCCCCCACCCCCA
CCTGCTCGAGCGGTGTCTTTCTGCCTCCCTCGTGCACACTGTCTCTGTTC
GCTGCTCTCTCGATGTTGTGTTGCCCGGTTCTACTTTTCTGCGCGAGGGC
AAGCACCGTACGACGCACCAGGTGCATCGCTTGTCCCCGCTCCAACGAGC
GTCATCTCCGTAGGATCTCCGCTACCGCTACCGCTACCGCTACCCCTTCT
GCTGCTTCCGGAGCACACCGTGCAAGCATGAACATTGAACGCTGCCCTTC
TTGGAGAGCATTGACCCTTCTCCCCGCCTTTGGATATTTCTATTCGTCTC
CTCGCTGTCATGTGCACGAGGGGGTACACATGTACACATACCCGGTGGAC
AGGGTTTGGCGAATGAGTTTGCCGCCATTGAAGCTACCGCCGCTGCTTCC
ACCGATCCTTGGTCTGAGCAGGTGCTTCGTGCGCCACGCTGTGCGTACAA
GAACGCCTTCCGAGGAAACCAACTGAACCGGTTCTGTTCGGCTCGGTTCG
GTTTACCCCCCCTTGCCTCTTTTCTTGTTTTGTGACGGCCGCGGCAACGA
ACACGACGACCACATCAACAGGGGACTCTTCAGCTCTTCGCTGGGCGAGC
ACGTGATTCTGTCGTGCCTGTACTTCGCGAAGGACGTGGATCGGTGGAAA
AGAAACCAGCGGGAACGCAAGTGGGATCAATTCTGTGTGACAGAGGTGCG
ACATCCTCACGGAAAACGTGTCCTCTGGCTGGCTTCCTCTGCCTTTGGGT
GATCCGCGTCGCATGTCTACTCTTGTTGGGCCTAAATCCTGTCGTTGTTT
TTTATTTTTCTCGAATGTCTGTGCTACTTTATCCTCCGGCACTGGATGGC
TGAATGCATTCCAGCGTCACTGGCGCACCTTTCCTCCCCCGAGAGAAAAC
AAAGAGAGGGACTCCCTAGCAGGACACGGCGGCGGGAGTGACAACTCCAC
GTGACGGCCATCTAGATGAAAACGATGCACCAACCAAACCTAATGCTCCA
TGCGCAGGTGACTGGGACCACTCTGGGTGTGATCGGGTACGGAGACATCG
GCCAAGCGGCCGCGCGCAGGGCCAAGGCGATGGGCATGCGGATTGTCGCC
CAGCGGAGGCGGCCGGAGCTGTCCCAGGGGGACGGAATCGCCGACGAAGT
GCTCGGCGCGGATCAGGTGCGGAAAGGTGACGTGTACGCCAGCATCGTCA
GAGAGAGCGGACGCTCTGTCGTTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGTTGTTGTTCTTCTTGTTCTTGTTCTTGTTCTTGTTGTTCTTGT
TGCTGCTTCTTTTGCAGCTGTTGCTATTGTTGCTGCTGCTGCTGCTGCTA
CCGCTGTCACTTCTGTTCTTGATGTCCTCTCTCAAAGGTATCAACGACTG
CTATGTCCTGTACCTGGTGCGACGCTGTTGTGTACCTATCCCGTTCGGAA
AATGCGGCATGTAGTCACTGGCTGCCCGACCCAAATAAAAGCACCCACAT
TCCAGAGGGTAATAAAACATGTCGCATGGCGTACCTCAGGAGGTGTCCCT
ACGGTGTTGTTATGTCTTTCCTTAGAATATGACGACGTCAGTGTTACCGC
TGCCATTGGATTTCTCACCGTTGTACTGAAGGATCACGCGCTCGACCACC
ACGCACAGACTCGTACGCCGTTCCCTTCAAGAGCGGCAGTCGCACCGTGT
TTGTGCCCCAAAGATAGACAGGGAACAGAAGAAAGTAAGCAGCATCTAAG
AAGGAAATCGGGAGGAGTGTAGAATCGCTGTAAGCTTGGCCGGGATGAAA
TTTTTTGTAGAAGGGCAGCTGACGTTGTTGAGTCGCCTACTACCTTTCAC
GAACGACTTGATCTTTGTGTCGGTCGATTCCGAGCCGCGATTGCTGGGTC
GATTTTTCCAGAACAAAGCGGCTCCGTGGAAGATACGTCGGCAGGCAAGG
TTCTCCTTGTTTACTTGTTTTCCAATGTTCCGTGCGTCAAACAACGCGCG
AGCAGGTCGGCGATGTGATCGAGAAGTCCGACTACATCGTGGTGGCCGCA
GCGTTGACACCAGAAACCCAGGGCATGGTGGGAGCCGCGGAGCTTGCGAG
GGTGAGCTAAGTCGTGGTAGTGGAGTGGTCCGGCTGGAGGCTTGTCCCGC
TTTTCCTGCAGTCGGTGATGGTCGATAGAAGGCGGCGCGGGCAACAAGGG
AGTGAGGTCGCGGGCAATCGGGGGACATAGTGAATATTGAAATGGCGTTG
CGATTGTTCTGGCGAATGTTCGGCCGTGTCTTCTTTTCCTCGGGTTTCAA
CGGAGTTCCAACTTGCGACCGACTAGGTTTTGAATCGCAAGTTGGCGTTT
TTTGTTTTATCTTGGCTGTTTCGTGCTCCTATTCCCAGTATTATCAAACA
ACACATGGGCCTCCCCGTTTTCTCTACGAACTTATTTTTTTGCCTGCTGG
TTCCCCAAGTTCAGCCGCAATCGTAGTGGATCATGCGGCACATCTCTTGA
GCCGGTCGCCCCCGGTGATTCAGTTCGGTAGCTGCCCAAACACCTAGCGG
TTGGGACATCAGTTCGAATCTCGACGAAGCCTCGCCATCTTGGATATGTC
GTTGGTACACAAAATTCGCCTCTGTGCTCGAGCTGTGGATGGGATGACTG
ATTTGCTCTAGGTACACTGTAGAGGCAACCACCGCAGATTTGTCTGGTGC
TGGAGAAGAGGGGCAAGCTGTACGGGGACCTTCCTTCCGTCTGAATCGAG
CTGGTGCGCCTTCAGTGGAGTCCCGAGGAAAAGGCTTGGTAGTACATTAC
ACGCGGCTACGAGAGAGCTTGCTAAAGAGAAAATGCCCTGAGCACGTCTG
CGTGGGGCCGGGCGGGTGCCGTGGTGGGTGACGTACATTGGAGACTGGAG
AGATTCTTTGGGCGGCGACAAGTTGATGGCTGTGCCTCCTCTGGGTGCTG
TACACCACGCTCGTGAATCTCAGTAATCCTTGCTCTCATGTGGGGGCCGC
TGACAACAGGGTGAAGCAAGCGCTTTTGAAACCCGGGGAGGATCGTAGCA
TGCGCCCGACAACACCCGGAAGACGTCCTACGACACCCTCCCCCGGCGGT
TCCGCGGCCCATCCTCTTGTCCGTGCGTCTTTTCCTGCCTTTCTCTCTCC
CTCGCTGCTTTCTCTGCTGCTCCCTCCCGTTGACAGGCTAAACCACACTC
GGTGATAATCAACGTCGGACGAGGTCCCCTGATCGATGAGGAGGCTATGA
CGAAAATGCTGCAGGACGGGCGCTTGAGGTCAGAGCACTCGGAGTTGTCG
TGGTTTCCTTGCCGTTGTCAGCCTTCCCCGGTCGTCGCTCGTGCGGTAGT
GGGTCGCCGATCATCGCGCCTCTTGCATCTTTGTGCTCGTTCGTCCAATA
TTTCTTCCACCAGCAAGCGTGATCTTACAAGCAACCTGGTATTTTGTACG
GAGTATTTTGTACGCCTGTCGGGGGAAGTAACTGCTGTGCCTGTCTTGTC
TCGTCGACATCCGCTCATTGCTTCCCGCCGTACCTTCGTTCTTGTCCCCC
CCCCCCCCCCCCGGCCCGCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1271:18752..25471-

>mRNA_H-canaliculatus_F_contig1271.2262.1 ID=mRNA_H-canaliculatus_F_contig1271.2262.1|Name=mRNA_H-canaliculatus_F_contig1271.2262.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1644bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1271:18752..25471- (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGTGTTGCCCGGTTCTACTTTTCTGCGCGAGGGCAAGCACCGTACG
ACGCACCAGATGTTGTGTTGCCCGGTTCTACTTTTCTGCGCGAGGGCAAG
CACCGTACGACGCACCAGGGGACTCTTCAGCTCTTCGCTGGGCGAGCACG
TGATTCTGTCGTGCCTGTACTTCGCGAAGGACGTGGATCGGTGGAAAAGA
AACCAGCGGGAACGCAAGTGGGATCAATTCTGTGTGACAGAGGGGACTCT
TCAGCTCTTCGCTGGGCGAGCACGTGATTCTGTCGTGCCTGTACTTCGCG
AAGGACGTGGATCGGTGGAAAAGAAACCAGCGGGAACGCAAGTGGGATCA
ATTCTGTGTGACAGAGGTGACTGGGACCACTCTGGGTGTGATCGGGTACG
GAGACATCGGCCAAGCGGCCGCGCGCAGGGCCAAGGCGATGGGCATGCGG
ATTGTCGCCCAGCGGAGGCGGCCGGAGCTGTCCCAGGGGGACGGAATCGC
CGACGAAGTGCTCGGCGCGGATCAGGTGACTGGGACCACTCTGGGTGTGA
TCGGGTACGGAGACATCGGCCAAGCGGCCGCGCGCAGGGCCAAGGCGATG
GGCATGCGGATTGTCGCCCAGCGGAGGCGGCCGGAGCTGTCCCAGGGGGA
CGGAATCGCCGACGAAGTGCTCGGCGCGGATCAGGTCGGCGATGTGATCG
AGAAGTCCGACTACATCGTGGTGGCCGCAGCGTTGACACCAGAAACCCAG
GGCATGGTGGGAGCCGCGGAGCTTGCGAGGGTCGGCGATGTGATCGAGAA
GTCCGACTACATCGTGGTGGCCGCAGCGTTGACACCAGAAACCCAGGGCA
TGGTGGGAGCCGCGGAGCTTGCGAGGGCTAAACCACACTCGGTGATAATC
AACGTCGGACGAGGTCCCCTGATCGATGAGGAGGCTATGACGAAAATGCT
GCAGGACGGGCGCTTGAGGTCAGAGCACTCGGAGTTGTCGTGGTTTCCTT
GCCGTTGTCAGCCTTCCCCGGTCGTCGCTCGTGCGGTAGTGGGTCGCCGA
TCATCGCGCCTCTTGCATCTTTGTGCTCGTTCGTCCAATATTTCTTCCAC
CAGCAAGCGTGATCTTACAAGCAACCTGGTATTTTGTACGGAGTATTTTG
TACGCCTGTCGGGGGAAGTAACTGCTGTGCCTGTCTTGTCTCGTCGACAT
CCGCTCATTGCTTCCCGCCGTACCTTCGTTCTTGTCCCCCCCCCCCCCCC
CCGGCCCGCCGCTAAACCACACTCGGTGATAATCAACGTCGGACGAGGTC
CCCTGATCGATGAGGAGGCTATGACGAAAATGCTGCAGGACGGGCGCTTG
AGGTCAGAGCACTCGGAGTTGTCGTGGTTTCCTTGCCGTTGTCAGCCTTC
CCCGGTCGTCGCTCGTGCGGTAGTGGGTCGCCGATCATCGCGCCTCTTGC
ATCTTTGTGCTCGTTCGTCCAATATTTCTTCCACCAGCAAGCGTGATCTT
ACAAGCAACCTGGTATTTTGTACGGAGTATTTTGTACGCCTGTCGGGGGA
AGTAACTGCTGTGCCTGTCTTGTCTCGTCGACATCCGCTCATTGCTTCCC
GCCGTACCTTCGTTCTTGTCCCCCCCCCCCCCCCCCGGCCCGCC
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