mRNA_H-canaliculatus_F_contig12706.2257.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12706.2257.1
Unique NamemRNA_H-canaliculatus_F_contig12706.2257.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12706.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12706contigH-canaliculatus_F_contig12706:136..797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.0575378-CDS-H-canaliculatus_F_contig12706:136..2211622928992.0575378-CDS-H-canaliculatus_F_contig12706:136..221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12706 137..221 -
1696845641.5171347-CDS-H-canaliculatus_F_contig12706:136..2211696845641.5171347-CDS-H-canaliculatus_F_contig12706:136..221Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12706 137..221 -
1622928992.074782-CDS-H-canaliculatus_F_contig12706:711..7971622928992.074782-CDS-H-canaliculatus_F_contig12706:711..797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12706 712..797 -
1696845641.5257738-CDS-H-canaliculatus_F_contig12706:711..7971696845641.5257738-CDS-H-canaliculatus_F_contig12706:711..797Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12706 712..797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12706.2257.1prot_H-canaliculatus_F_contig12706.2257.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12706 137..797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12706.2257.1

>prot_H-canaliculatus_F_contig12706.2257.1 ID=prot_H-canaliculatus_F_contig12706.2257.1|Name=mRNA_H-canaliculatus_F_contig12706.2257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
IPTTSPRTNETRRFWPLSKTPWTDFSRRRYRSWHTGEDGRIVKDRENGIG
EGELTVA
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mRNA from alignment at H-canaliculatus_F_contig12706:136..797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12706.2257.1 ID=mRNA_H-canaliculatus_F_contig12706.2257.1|Name=mRNA_H-canaliculatus_F_contig12706.2257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=662bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12706:136..797- (Hapterophycus canaliculatus Oshoro5f female)
ATTCCAACGACGTCTCCGCGGACGAACGAAACAAGAAGATTTTGGCCACT
ATCGAAGACGCCATGGACGGATTTTTCGCGAAGAAGGTCGGCGTCGAAGG
CGGGTGGAAGAACGGCGTCACTGAGAGGGAAAATGAAGACCTTGTCGCCC
TTGTCGCAAGTCTGCCCGATCCCTTCGGCGGGTTCAAGCTTAACCCCGTC
CAAGAAGTGAGCGGCATCCTATCGCGAAATGCTGACTGAATACACGAAAG
CAGAAGCGGAAATGGCGCTCGGTGGCACGTGCGGCAAAGATCTGCCGTAG
TGTACGGAATAGTCTTGTACAAAATAGCATCAGGGGCGGAGCGGAGAAAG
GATAAAAGCAGAGAGTTGAATTCGATTGCTCTCGGTTGACCTCCTGTCGT
GTTGCGCTAGGCCTTTATCCTAAAACATGGTGCCGAAATGGCAGTCTTCA
CGCGATTCCGGTTTATTCTGGGCGAAATATGATAGTGTCGTGTGAGCGAT
TCTTGGAATGAACAAAAACCTCGTTGCAGTGTAGAACAACCGCCGAATCC
CACGTCCCTTTTGAACCACACCCCAGGTATCGATCGTGGCACACCGGTGA
GGACGGACGCATTGTCAAGGACAGGGAGAACGGCATCGGGGAAGGGGAAC
TCACAGTCGCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12706:136..797-

>mRNA_H-canaliculatus_F_contig12706.2257.1 ID=mRNA_H-canaliculatus_F_contig12706.2257.1|Name=mRNA_H-canaliculatus_F_contig12706.2257.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12706:136..797- (Hapterophycus canaliculatus Oshoro5f female)
ATTCCAACGACGTCTCCGCGGACGAACGAAACAAGAAGATTTTGGCCACT
ATCGAAGACGCCATGGACGGATTTTTCGCGAAGAAGATTCCAACGACGTC
TCCGCGGACGAACGAAACAAGAAGATTTTGGCCACTATCGAAGACGCCAT
GGACGGATTTTTCGCGAAGAAGGTATCGATCGTGGCACACCGGTGAGGAC
GGACGCATTGTCAAGGACAGGGAGAACGGCATCGGGGAAGGGGAACTCAC
AGTCGCTGTATCGATCGTGGCACACCGGTGAGGACGGACGCATTGTCAAG
GACAGGGAGAACGGCATCGGGGAAGGGGAACTCACAGTCGCT
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