mRNA_H-canaliculatus_F_contig12701.2255.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12701.2255.1
Unique NamemRNA_H-canaliculatus_F_contig12701.2255.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12701.2255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12701contigH-canaliculatus_F_contig12701:2498..2843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.8010674-CDS-H-canaliculatus_F_contig12701:2497..28421622928991.8010674-CDS-H-canaliculatus_F_contig12701:2497..2842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12701 2498..2842 +
1696845641.4357815-CDS-H-canaliculatus_F_contig12701:2497..28421696845641.4357815-CDS-H-canaliculatus_F_contig12701:2497..2842Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12701 2498..2842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12701.2255.1prot_H-canaliculatus_F_contig12701.2255.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12701 2498..2842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12701.2255.1

>prot_H-canaliculatus_F_contig12701.2255.1 ID=prot_H-canaliculatus_F_contig12701.2255.1|Name=mRNA_H-canaliculatus_F_contig12701.2255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
AVAAVAGATNASPALKASPAASTPATPPAPAPIRSCGRLPPRPTPPPPPP
LPTPSPLSLGSGPGSLIGCSRLSATGPSSPPLADAVMPAGLQEGELSALT
TPPAPGHPPAPVPVP
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mRNA from alignment at H-canaliculatus_F_contig12701:2498..2843+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12701.2255.1 ID=mRNA_H-canaliculatus_F_contig12701.2255.1|Name=mRNA_H-canaliculatus_F_contig12701.2255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12701:2498..2843+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGTAGCAGCAGTAGCAGGAGCAACCAATGCCTCTCCTGCCCTCAAAGC
TTCACCCGCCGCCTCGACACCTGCGACTCCACCAGCACCGGCTCCAATCC
GCTCTTGCGGAAGGCTACCGCCACGGCCCACCCCTCCGCCACCGCCACCA
TTGCCAACCCCGTCGCCGCTGTCCTTGGGATCCGGACCTGGCTCACTCAT
CGGTTGCAGCCGGCTCAGCGCGACGGGCCCGTCATCCCCCCCTCTCGCCG
ATGCGGTGATGCCCGCGGGGCTACAGGAGGGCGAGCTCTCTGCGCTAACC
ACTCCCCCCGCACCCGGACACCCCCCAGCTCCCGTCCCCGTTCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12701:2498..2843+

>mRNA_H-canaliculatus_F_contig12701.2255.1 ID=mRNA_H-canaliculatus_F_contig12701.2255.1|Name=mRNA_H-canaliculatus_F_contig12701.2255.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12701:2498..2843+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGTAGCAGCAGTAGCAGGAGCAACCAATGCCTCTCCTGCCCTCAAAGC
TTCACCCGCCGCCTCGACACCTGCGACTCCACCAGCACCGGCTCCAATCC
GCTCTTGCGGAAGGCTACCGCCACGGCCCACCCCTCCGCCACCGCCACCA
TTGCCAACCCCGTCGCCGCTGTCCTTGGGATCCGGACCTGGCTCACTCAT
CGGTTGCAGCCGGCTCAGCGCGACGGGCCCGTCATCCCCCCCTCTCGCCG
ATGCGGTGATGCCCGCGGGGCTACAGGAGGGCGAGCTCTCTGCGCTAACC
ACTCCCCCCGCACCCGGACACCCCCCAGCTCCCGTCCCCGTTCCTGCAGT
AGCAGCAGTAGCAGGAGCAACCAATGCCTCTCCTGCCCTCAAAGCTTCAC
CCGCCGCCTCGACACCTGCGACTCCACCAGCACCGGCTCCAATCCGCTCT
TGCGGAAGGCTACCGCCACGGCCCACCCCTCCGCCACCGCCACCATTGCC
AACCCCGTCGCCGCTGTCCTTGGGATCCGGACCTGGCTCACTCATCGGTT
GCAGCCGGCTCAGCGCGACGGGCCCGTCATCCCCCCCTCTCGCCGATGCG
GTGATGCCCGCGGGGCTACAGGAGGGCGAGCTCTCTGCGCTAACCACTCC
CCCCGCACCCGGACACCCCCCAGCTCCCGTCCCCGTTCCT
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