mRNA_H-canaliculatus_F_contig127.2248.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig127.2248.1
Unique NamemRNA_H-canaliculatus_F_contig127.2248.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig127.2248.1 vs. uniprot
Match: A0A6H5K2S4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2S4_9PHAE)

HSP 1 Score: 451 bits (1159), Expect = 3.560e-152
Identity = 270/451 (59.87%), Postives = 312/451 (69.18%), Query Frame = 1 
Query:   67 EKPFRDMSRKRRNLLAWSLRAASSSDTTLARGRANEKSRPTSRASMTVPCALGSVSVDEFFNREPGSPGH-RSAGARVDVDIDTLPNLEPYRREVVAQQPITFGHRPSSASRMFNPCTMATSCGVRS-GADLNARGV-GRRAGGTISTRRGASRTHNQSNSKRRRSRDSIPHGTTGISPPMLKALLRGDA---EVRPSVATAS-HQGEIRREGFGSAGRKNTAESVATEEYLILGGQEGCSDSSVNSELVHESMWRSVDPAGGG-VRGNLEATWLTNSSREGLGQGRLELRDSVEARELKRIFSDRRPPWDGTPAPLPAPRDVRRAISSLSMPDPDERLRDKLIKSRKAAAGIPVTASSTKDERDKELERRNPTPSVRWEVCPATPRAVIARDEIRRLADSRRERDSVMAERVRKAELSVFFKKIAPSEELYRRTLQVAQGRFQHQEVLAV 1395
            +KPFR+ SRK+RNLLAWS+RAAS+SD   A+  AN+   PT R S TV   L    + EFFN E G  G       RV+VD+DTLP LEPYRREVVAQQPITFGHRP SASRMFNPCTMATSCG+ S G   +  G+ GR+ GG            +       R R+S P  TTG+S PMLKALLRGD    E   ++ TAS HQ E+    F   G   + +S     YL+L GQE  +DSSVNSE + ES WRSVD  G G   G LE+ WL  SS  GLG GR  L ++ E +EL RIFS  RPPWDG PAPLPAP+  RRAISSL MPDPDERLRDKLIKSRKAAAG+PVTASSTKDER++EL   NPTP  RWEVCPATPRAVIAR EIRRL++ R ERD  MA++VR+AELSV FKKIAPSE+LYR TLQ+AQ RF+HQ   A+
Sbjct:   57 KKPFREFSRKKRNLLAWSIRAASASDAA-AQSTANKTHMPTRRLSTTVRSDLDGTDIGEFFNMERGMSGRVLHPTDRVEVDVDTLPTLEPYRREVVAQQPITFGHRPLSASRMFNPCTMATSCGIPSDGHHPSTGGIRGRKKGGG----------GHXXXXXXXRGRNSKPRRTTGLSAPMLKALLRGDTPTGEGGAALVTASQHQQEL----FEPNGNIVSRDSAPKPNYLVLDGQEDLTDSSVNSEKLDESKWRSVDDLGRGEALGELES-WLQTSSHSGLGHGRRRLGNTKEGQELHRIFSSERPPWDGAPAPLPAPQHTRRAISSLLMPDPDERLRDKLIKSRKAAAGVPVTASSTKDERERELRPFNPTPIGRWEVCPATPRAVIARQEIRRLSELREERDRAMAKKVRQAELSVLFKKIAPSEKLYRNTLQIAQERFRHQGTAAI 491
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig127.2248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2S4_9PHAE3.560e-15259.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig127contigH-canaliculatus_F_contig127:22003..24720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000180.1
Exons5
Model size1398
Cds size1398
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig127.2248.1prot_H-canaliculatus_F_contig127.2248.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig127 22003..24720 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.381209-CDS-H-canaliculatus_F_contig127:22002..220711622928990.381209-CDS-H-canaliculatus_F_contig127:22002..22071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 22003..22071 +
1696845640.7145903-CDS-H-canaliculatus_F_contig127:22002..220711696845640.7145903-CDS-H-canaliculatus_F_contig127:22002..22071Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 22003..22071 +
1622928990.3972626-CDS-H-canaliculatus_F_contig127:22299..231901622928990.3972626-CDS-H-canaliculatus_F_contig127:22299..23190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 22300..23190 +
1696845640.7241247-CDS-H-canaliculatus_F_contig127:22299..231901696845640.7241247-CDS-H-canaliculatus_F_contig127:22299..23190Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 22300..23190 +
1622928990.4147446-CDS-H-canaliculatus_F_contig127:23629..238001622928990.4147446-CDS-H-canaliculatus_F_contig127:23629..23800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 23630..23800 +
1696845640.7322495-CDS-H-canaliculatus_F_contig127:23629..238001696845640.7322495-CDS-H-canaliculatus_F_contig127:23629..23800Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 23630..23800 +
1622928990.4316359-CDS-H-canaliculatus_F_contig127:24055..242221622928990.4316359-CDS-H-canaliculatus_F_contig127:24055..24222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 24056..24222 +
1696845640.745951-CDS-H-canaliculatus_F_contig127:24055..242221696845640.745951-CDS-H-canaliculatus_F_contig127:24055..24222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 24056..24222 +
1622928990.4508243-CDS-H-canaliculatus_F_contig127:24620..247201622928990.4508243-CDS-H-canaliculatus_F_contig127:24620..24720Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 24621..24720 +
1696845640.756035-CDS-H-canaliculatus_F_contig127:24620..247201696845640.756035-CDS-H-canaliculatus_F_contig127:24620..24720Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig127 24621..24720 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig127.2248.1

>prot_H-canaliculatus_F_contig127.2248.1 ID=prot_H-canaliculatus_F_contig127.2248.1|Name=mRNA_H-canaliculatus_F_contig127.2248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=466bp
NPSLVHLTSADVPRTASFMVDAEKPFRDMSRKRRNLLAWSLRAASSSDTT
LARGRANEKSRPTSRASMTVPCALGSVSVDEFFNREPGSPGHRSAGARVD
VDIDTLPNLEPYRREVVAQQPITFGHRPSSASRMFNPCTMATSCGVRSGA
DLNARGVGRRAGGTISTRRGASRTHNQSNSKRRRSRDSIPHGTTGISPPM
LKALLRGDAEVRPSVATASHQGEIRREGFGSAGRKNTAESVATEEYLILG
GQEGCSDSSVNSELVHESMWRSVDPAGGGVRGNLEATWLTNSSREGLGQG
RLELRDSVEARELKRIFSDRRPPWDGTPAPLPAPRDVRRAISSLSMPDPD
ERLRDKLIKSRKAAAGIPVTASSTKDERDKELERRNPTPSVRWEVCPATP
RAVIARDEIRRLADSRRERDSVMAERVRKAELSVFFKKIAPSEELYRRTL
QVAQGRFQHQEVLAV*
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mRNA from alignment at H-canaliculatus_F_contig127:22003..24720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig127.2248.1 ID=mRNA_H-canaliculatus_F_contig127.2248.1|Name=mRNA_H-canaliculatus_F_contig127.2248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2718bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:22003..24720+ (Hapterophycus canaliculatus Oshoro5f female)
AACCCGTCGCTGGTTCACTTAACATCGGCTGACGTACCACGAACGGCCTC
CTTCATGGTGGATGCGGAGGTGAGGCGTTTCCACGGCTTTCGTTTTGCTC
CCAATAAGAGCCCTTCGGAGTGGAAAGGAAGCACCATCCAACAAAAATTA
CTATGCCCCTCTGTACAAACTGGTGATGGACGTTTGTTACACGCCCAAAC
AAGGTAATACCTCCAAAATGTCGAGCTCCAACTCCGCAATCGAAGCCTCG
CCGCTGCTTCTCCGACGCTTCACCTGTGCGCTGCGATCCTCACGCAGAAA
CCATTCCGAGATATGTCCCGGAAAAGACGGAATTTGCTGGCCTGGTCCCT
TCGCGCTGCCTCTTCGTCCGACACAACATTAGCTCGAGGGAGAGCAAACG
AGAAGTCCAGACCAACTTCAAGAGCGAGCATGACTGTTCCTTGCGCTTTA
GGAAGCGTCAGCGTAGATGAGTTTTTCAATCGAGAGCCGGGTTCGCCGGG
CCATAGGAGTGCTGGCGCTCGTGTGGACGTCGATATTGACACCTTGCCCA
ACTTAGAGCCGTATCGCCGGGAGGTTGTGGCACAGCAACCGATCACATTT
GGGCATAGGCCATCGTCCGCATCGCGAATGTTCAATCCCTGCACAATGGC
AACATCGTGCGGTGTTCGAAGCGGTGCGGACTTGAATGCTAGAGGTGTCG
GTAGAAGAGCGGGTGGAACGATCAGCACCAGGAGGGGCGCGTCCAGGACA
CACAATCAATCCAACAGCAAGAGAAGAAGAAGCAGAGATAGCATACCCCA
CGGGACAACCGGGATAAGCCCGCCAATGCTCAAGGCGCTCTTGAGGGGGG
ACGCTGAAGTTAGACCGTCGGTGGCGACCGCATCTCATCAAGGTGAAATT
CGGAGGGAGGGCTTTGGCTCGGCTGGTCGCAAAAACACCGCCGAATCTGT
CGCAACGGAGGAGTACCTGATTCTTGGCGGGCAGGAAGGTTGTAGCGACT
CCTCAGTCAACAGTGAACTGGTACACGAAAGTATGTGGAGGTCTGTCGAC
CCCGCTGGTGGAGGAGTGCGCGGGAATCTGGAAGCTACATGGTTGACGAA
CTCGAGCCGAGAAGGACTGGGTCAAGGACGGCTTGAATTGCGTGATTCCG
TGGAAGCACGAGAGCTGAAACGCATTTTCTCCGATCGGGTGAGTGCAAAG
GTGCCCGCACAGGCCGCAATGGTCGATTTGATGCACCAGCGAGAGATTTT
GCGAAGATTTCCAAACTTTTTGTTTAGGTTATTGAACGTCCCGCGGTGAG
TCTTCTACCCTAATCTAGCTGCGGCATGTCTTTGGATGAGGCCATGGGCT
ACTCTTGTCCAGGGCAAGCTAGATACTCCGGAGTATATGATATACTAAAT
GCAAAGCGCCTGCAATTATTATAGTATAGAAATGGTCGCTACTCTTGATC
TATTTCATTCTGAAGGGATGCTCTTTTACAAATCGGCCTTTGTTGGTGGT
GCATCGTCACAACATAGGTTGAACACTGTATCCGCCTGGTGTTCACTCTC
CGGTCTCTATTTCGGCGCTCCGGACCCCTTCCGCATTGCTATCCGACTCG
TTGCGCGTCCTCAATCTACAAGCGTAGAGACCACCGTGGGATGGAACGCC
AGCACCCTTGCCCGCCCCGCGAGACGTGAGGCGCGCCATCAGCTCGCTTT
CGATGCCAGATCCCGATGAAAGACTACGAGACAAGCTCATCAAGTCCAGG
AAGGCCGCCGCGGGAATACCAGTCACTGCTTCGAGCACGAAGGACGAGGT
AGAGAAATGAATCGGGATTTAAGGCGATAGTTCTTGCGGTGTAAGCAAAC
TCGAAACAGAAGGGTGTGTTCAGCCAAGGTTGAGCGAACGCTTACTTAAA
CGATGGGGTTCATGGTCAGCTCCGTGGCATCGCTTTTCGCTCTTCCGAGC
GTGCTGACCGAAGCTTGACGACCCCTCCCCCCCCCCCGAGGTGAAATGTC
AACACCTCATCACCGCACGCGCTTACTGTGGATACTGCGTGTGTGGCTGG
CAGAGAGACAAAGAGCTCGAGCGTCGCAATCCCACGCCGTCCGTGCGGTG
GGAGGTTTGCCCCGCTACCCCCCGAGCGGTGATTGCCCGGGACGAGATAA
GGAGACTGGCGGACTCGCGGCGCGAGCGTGACAGCGTTATGGCCGAACGA
GTGCGCAAGGCTGAGTTGAGGTGGGAGTAGCACCGAACTCGGACGTGTAG
AGCCTAATGCTGTCTACTGTTTCGTGGTATACGAGCGTCCGTCCTTTGAG
GATTGAGCTTTGATCGTCGTCCTTCGTCTGTCGACACTGGTATATTTCGA
AGTACTTATGTAAGGTACTTCACCATTGTCGAGGAGATTTTGGGTTCTGC
CGCGGATCAGGCAAGAATTCGCGAGTGCTGCACTTATTGCAACAGGCGGC
AATTTCAGAACGCTGTACAGGAGCCCCAACAATCATAGAAACGCGCTGGA
TACCAATGCAAGCCGCCGTACAGGTGATGACCACTAATATGTTCCCATTG
CATTGCCTCTCAAGTTTGCTCCTTTTTCTGTCGCCGACCCCGCCGCTGAT
CCTGCCGTCGACACGAAGCGTGTTCTTCAAGAAAATCGCACCCTCGGAGG
AACTTTATCGCAGGACGCTACAAGTGGCTCAAGGAAGATTTCAGCATCAG
GAAGTTTTGGCCGTCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig127:22003..24720+

>mRNA_H-canaliculatus_F_contig127.2248.1 ID=mRNA_H-canaliculatus_F_contig127.2248.1|Name=mRNA_H-canaliculatus_F_contig127.2248.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2796bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:22003..24720+ (Hapterophycus canaliculatus Oshoro5f female)
AACCCGTCGCTGGTTCACTTAACATCGGCTGACGTACCACGAACGGCCTC
CTTCATGGTGGATGCGGAGAACCCGTCGCTGGTTCACTTAACATCGGCTG
ACGTACCACGAACGGCCTCCTTCATGGTGGATGCGGAGAAACCATTCCGA
GATATGTCCCGGAAAAGACGGAATTTGCTGGCCTGGTCCCTTCGCGCTGC
CTCTTCGTCCGACACAACATTAGCTCGAGGGAGAGCAAACGAGAAGTCCA
GACCAACTTCAAGAGCGAGCATGACTGTTCCTTGCGCTTTAGGAAGCGTC
AGCGTAGATGAGTTTTTCAATCGAGAGCCGGGTTCGCCGGGCCATAGGAG
TGCTGGCGCTCGTGTGGACGTCGATATTGACACCTTGCCCAACTTAGAGC
CGTATCGCCGGGAGGTTGTGGCACAGCAACCGATCACATTTGGGCATAGG
CCATCGTCCGCATCGCGAATGTTCAATCCCTGCACAATGGCAACATCGTG
CGGTGTTCGAAGCGGTGCGGACTTGAATGCTAGAGGTGTCGGTAGAAGAG
CGGGTGGAACGATCAGCACCAGGAGGGGCGCGTCCAGGACACACAATCAA
TCCAACAGCAAGAGAAGAAGAAGCAGAGATAGCATACCCCACGGGACAAC
CGGGATAAGCCCGCCAATGCTCAAGGCGCTCTTGAGGGGGGACGCTGAAG
TTAGACCGTCGGTGGCGACCGCATCTCATCAAGGTGAAATTCGGAGGGAG
GGCTTTGGCTCGGCTGGTCGCAAAAACACCGCCGAATCTGTCGCAACGGA
GGAGTACCTGATTCTTGGCGGGCAGGAAGGTTGTAGCGACTCCTCAGTCA
ACAGTGAACTGGTACACGAAAGTATGTGGAGGTCTGTCGACCCCGCTGGT
GGAGGAGTGCGCGGGAATCTGGAAGCTACATGGTTGACGAACTCGAGCCG
AGAAGGACTGGGTCAAGGACGGCTTGAATTGCGTGATTCCGTGGAAGCAC
GAGAGCTGAAACGCATTTTCTCCGATCGGAAACCATTCCGAGATATGTCC
CGGAAAAGACGGAATTTGCTGGCCTGGTCCCTTCGCGCTGCCTCTTCGTC
CGACACAACATTAGCTCGAGGGAGAGCAAACGAGAAGTCCAGACCAACTT
CAAGAGCGAGCATGACTGTTCCTTGCGCTTTAGGAAGCGTCAGCGTAGAT
GAGTTTTTCAATCGAGAGCCGGGTTCGCCGGGCCATAGGAGTGCTGGCGC
TCGTGTGGACGTCGATATTGACACCTTGCCCAACTTAGAGCCGTATCGCC
GGGAGGTTGTGGCACAGCAACCGATCACATTTGGGCATAGGCCATCGTCC
GCATCGCGAATGTTCAATCCCTGCACAATGGCAACATCGTGCGGTGTTCG
AAGCGGTGCGGACTTGAATGCTAGAGGTGTCGGTAGAAGAGCGGGTGGAA
CGATCAGCACCAGGAGGGGCGCGTCCAGGACACACAATCAATCCAACAGC
AAGAGAAGAAGAAGCAGAGATAGCATACCCCACGGGACAACCGGGATAAG
CCCGCCAATGCTCAAGGCGCTCTTGAGGGGGGACGCTGAAGTTAGACCGT
CGGTGGCGACCGCATCTCATCAAGGTGAAATTCGGAGGGAGGGCTTTGGC
TCGGCTGGTCGCAAAAACACCGCCGAATCTGTCGCAACGGAGGAGTACCT
GATTCTTGGCGGGCAGGAAGGTTGTAGCGACTCCTCAGTCAACAGTGAAC
TGGTACACGAAAGTATGTGGAGGTCTGTCGACCCCGCTGGTGGAGGAGTG
CGCGGGAATCTGGAAGCTACATGGTTGACGAACTCGAGCCGAGAAGGACT
GGGTCAAGGACGGCTTGAATTGCGTGATTCCGTGGAAGCACGAGAGCTGA
AACGCATTTTCTCCGATCGGAGACCACCGTGGGATGGAACGCCAGCACCC
TTGCCCGCCCCGCGAGACGTGAGGCGCGCCATCAGCTCGCTTTCGATGCC
AGATCCCGATGAAAGACTACGAGACAAGCTCATCAAGTCCAGGAAGGCCG
CCGCGGGAATACCAGTCACTGCTTCGAGCACGAAGGACGAGAGACCACCG
TGGGATGGAACGCCAGCACCCTTGCCCGCCCCGCGAGACGTGAGGCGCGC
CATCAGCTCGCTTTCGATGCCAGATCCCGATGAAAGACTACGAGACAAGC
TCATCAAGTCCAGGAAGGCCGCCGCGGGAATACCAGTCACTGCTTCGAGC
ACGAAGGACGAGAGAGACAAAGAGCTCGAGCGTCGCAATCCCACGCCGTC
CGTGCGGTGGGAGGTTTGCCCCGCTACCCCCCGAGCGGTGATTGCCCGGG
ACGAGATAAGGAGACTGGCGGACTCGCGGCGCGAGCGTGACAGCGTTATG
GCCGAACGAGTGCGCAAGGCTGAGTTGAGAGAGACAAAGAGCTCGAGCGT
CGCAATCCCACGCCGTCCGTGCGGTGGGAGGTTTGCCCCGCTACCCCCCG
AGCGGTGATTGCCCGGGACGAGATAAGGAGACTGGCGGACTCGCGGCGCG
AGCGTGACAGCGTTATGGCCGAACGAGTGCGCAAGGCTGAGTTGAGCGTG
TTCTTCAAGAAAATCGCACCCTCGGAGGAACTTTATCGCAGGACGCTACA
AGTGGCTCAAGGAAGATTTCAGCATCAGGAAGTTTTGGCCGTCTAGCGTG
TTCTTCAAGAAAATCGCACCCTCGGAGGAACTTTATCGCAGGACGCTACA
AGTGGCTCAAGGAAGATTTCAGCATCAGGAAGTTTTGGCCGTCTAG
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