mRNA_H-canaliculatus_F_contig127.2245.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig127.2245.1 vs. uniprot
Match: A0A6H5K005_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K005_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 5.190e-131 Identity = 407/1177 (34.58%), Postives = 528/1177 (44.86%), Query Frame = 3
Query: 225 RQATLQ-RQDDELRNFSNSQRRTARYTELGPGSFSAPVARLSKWPKNIFFASDFIADKAAASKSIKNRATKLSRATGGRRSEVAPRKKD--RRSRANAD-AKEPRLNKKGNTS---ESTDGRKTSRRSTQGLTESDRKRSVVVAGEEEASFMERSARALLLLHSRFFGSVTHWDDIVCCMCKLCKEAGWMGNPLRECPDLDPLVLDELLTKQQAAKVVGESGRQGRS-----SDTCPETKVGSAMSFEDLYRILATIASLVYPRDAEDKRQGARRGRAMQRLLIEGVLPLAADNRPRRWSLRPEILYGRPALAALSMQRDTLHQLYCTSDDISRANGGSGGVSRNLFLQ----MLADLGICPGSVSENHAASVFNDAMRNGMPEAKASLRHKQGQSRDTMSLRGTGDGSNHSTELIEPSTEGCFTRQPEDDRLDWSLFLEAMAALAVGAVKDGQGTPTNRDRIRTHKAKPRHWNKARRDCDIQERPRAARKAAPSWTEQPSFPGRRGSNPAVETDCMSVKRAARMERAVRHVLGDAAAGLAPGMPNPKSHGRAFHYDPKRSLELMTTLPEGSSPQEERIGLPVQSRPRHSQPKPSRVKEGTSVKVSTSATRTFEPLPPEINTPTKEEYRTVTPKCLDSETRGTGSIEGRTRCKMKYRSIKEPHSVVTQAVRGELTSRRVAELSALSPQRSDEFLLQESSVRGGQSCARVANEGKETEDRTAKSNATNVARCPTVDDHATAIHQRVAGDTLAGFQAD------FARSKENILEATLDGSPAPIRGRTPSSLTEDFPIVADTDGRHGSMQKGPLLGAPRPIP--LRPNTPPETRSDGVAGDVVGVSSQRTGVDVESRSSAV-----------------NVGTWAYCKPATAHFLLPQKQVDGKNIAALSPAPCHGGPPSALFYSALPVAGERLDGAVYCASPDKILRPAAVTALGADDTE-----TDKPLRPPRVQGQLDELRP------GRDGAETSGYRSG------DRNSGGHCHVDGDVPAEDDRAKRHQEQGHKQGYADRITMDLEATSCTAKMFEELLEPGIAAVYLRHYKDLQVIFQRYRTRPDG-ENRRPASESQEIFGCVDDSGVRRFINDSPALQRWAEGDSILPLILRVSRERGQQRCDKVPLTNISGLSYFGFLEVLTRMAYATHGQ 3578
+QATLQ +Q ++ N +NS+R T Y++ G G+FS PVA LSKWPKN+FFASDFIADKAAA+ K K SR R A K+ R SR + A R+N+ +T+ S GR + S + + VA +EEA F+E SA ALLLLHSRFFG H DD+V +C LC+EAGWMGNPL C LDPLV++E++ ++ + G Q + S T + SFED Y+ILA +A LVY +A ++RQ A+ GRAM RLL EGVLPLA DN+PRRWS R E+L+GRPALAAL MQRDTL +LYCT + +RA G+ G++RN FL+ ML DLG+ P SV+E HAASVF+D +RNG+P S+ +Q T+ L +G G + S + +P RL WSLFLEAMAALAVGAVK+GQ R R GR +N A E +A+H D S E L E S + R GL Q RP +RV +G P+K++ V +S TG I RT SV QS AR +E +E K NAT+ A H R + + A AR +E A+ D S +R R+P S + G + RP++ P R+ V V + A + A + P + K++AALSPAPCHGGPPS +A + C SP R A L + + E D LRP +G + P G GAE S R+G R + DDR K + AD I MD EA C+ +FEELLEP + A Y RH K+L V+FQRYRTR G ++R S S+E GCV + G+ RF++D P L+RW +GD+IL LI+R S +RG+QRC N GLSYFGFLEVLTRMAYAT G+
Sbjct: 36 KQATLQSQQSQDVGNSANSRRPTPTYSKTGSGAFSKPVAHLSKWPKNVFFASDFIADKAAAAACRKRSTVKSSRGAAPRCRRNAGEGKEMGRGSRVLGEKAPVTRMNENRSTTVFCTSGGGRAFQQNSVRSSENGEGSTGASVACDEEALFLEESASALLLLHSRFFGRARHPDDVVSSLCTLCREAGWMGNPLVVC-SLDPLVVEEIVIERLRRNHHTDVGWQRHNNNSGGSSTPAQHYEDYDFSFEDFYQILADVAGLVYSIEAHEERQRAKPGRAMHRLLTEGVLPLAEDNQPRRWSPRSEMLFGRPALAALRMQRDTLRELYCTYNKDTRARDGASGLNRNQFLEASVGMLTDLGVSPVSVTEQHAASVFDDIIRNGLPVTGPSIGRRQSWGEGTV-LGASGRGDHCLMAGERYSGLPSSSNKPGGGRLCWSLFLEAMAALAVGAVKNGQSVLPRRRRN----------------------------------------GRDSANHATE--------------------------------------KAWHSDGTDS-EGSHRLYEQSHGKTGR-GLVQQPRPPE-----NRVTQGA---------------------PSKDKRHGVDSLLPESRYATTG-IAART------------------------------------------------SVDAEQSRARYKSESREN----TKWNATDSATSHAGAHPKERYHPRSSNNVDAVIDKGPTSRPVHARPEEEKFRASADMSGG-VRERSPMSSGXXXXXXXTASAAGALLHAVAAHGREEAVAGSRRPDSGPAKRTSSVMPSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGSCDKLADVQAAPVNVSSPNNVFNTKDVAALSPAPCHGGPPSLAVSAA----------SGGCRSPT--CRVAVDLGLPSLEVEQEGGTADVILRPDPGKGSAHHVAPRERLCAGVGGAEGSYCRAGRIESTVGRGGAEKSKALRGIDTHDDRLKG----VGRAARADHIKMDFEAAGCSVGLFEELLEPRVVATYSRHQKELLVLFQRYRTRFGGKQSRLLLSCSEETSGCVSEQGIWRFVSDFPVLRRWVQGDNILLLIVRASLQRGRQRCGTEHAENSMGLSYFGFLEVLTRMAYATDGE 1034
BLAST of mRNA_H-canaliculatus_F_contig127.2245.1 vs. uniprot
Match: D7G6P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P3_ECTSI) HSP 1 Score: 429 bits (1102), Expect = 1.820e-128 Identity = 390/1180 (33.05%), Postives = 520/1180 (44.07%), Query Frame = 3
Query: 225 RQATLQRQDDELRNFSNSQRRTARYTELGPGSFSAPVARLSKWPKNIFFASDFIADKAAASKSIKNRATKLSRATGG---RRSEVAPRKKDRRSRA-NADAKEPRLNKKGNTS---ESTDGRKTSRRSTQGLTESDRKRSVVVAGEEEASFMERSARALLLLHSRFFGSVTHWDDIVCCMCKLCKEAGWMGNPLRECPDLDPLVLDEL----LTKQQAAKVVGE--SGRQGRSSDTCPETKVGSAMSFEDLYRILATIASLVYPRDAEDKRQGARRGRAMQRLLIEGVLPLAADNRPRRWSLRPEILYGRPALAALSMQRDTLHQLYCTSDDISRANGGSGGVSRNLFLQMLADLGICPGSVSENHAASVFNDAMRNGMPEAKASL--RHKQGQSRDTMSLRGTGDGSNHSTELIEPSTE-GCFTRQPEDDRLDWSLFLEAMAALAVGAVKDGQGTPTNRDRIRTHKAKPRHWNKARRDCDIQERPRAARKAAPSWTEQPSFPGRRGSNPAVETDCMSVKRAARMERAVRHVLGDAAAGLAPGMPNPKSHGRAFHYDPKRSLELMTTLPEGSSPQEERIGLPVQSRPRHSQPKPSRVKEGTSVKVSTSATRTFEPLPPEINTPTKEEYRTVTPKCLDSETRGTGSIEGRTRCKMKYRSIKEPHSVVTQAVRGELTSRRVAELSALSPQRSDEFLLQESSVRGGQSCARVANEGKETEDRTAKSNATNVARCPTVDDHATAIHQRVAGDTLAGFQADFARSKENILEATLDGSPAPIRGRTPSSLTEDFPIVADTDGRHGSMQKGPLLGAPRPIPLRPNTPPETRSDGVAGDVVGVSSQRTGVDVESRSSAVNVGTWAYCKPATAHFLLPQKQVDGKNIAALSPAPCHGGPPSALFYSALPVAGERLDGAVYCASPDKILRPAAVTALGADDTE-----TDKPLRPPRVQGQLDELRP---------GRDGA-------ETSGYRSGDRNSGGHCHVDGDVPAEDDRAKRHQEQGHKQGYADRITMDLEATSCTAKMFEELLEPGIAAVYLRHYKDLQVIFQRYRTRPDGENRR-PASESQEIFGCVDDSGVRRFINDSPALQRWAEGDSILPLILRVSRERGQQRCDKVPLTNISGLSYFGFLEVLTRMAYATHGQQPLQAKLLDFLDALKVHDTTGIRT 3650
RQATLQ QD E N +NS+R + +Y++ G G+FS PV RLSKWPKN+FFASDFIADKAAA+ K K SR RR+ + R SRA +A R+ + +T+ S G + S + + + +R VAG+ G H +D+VC +C LC+EAGWMGNPL CP LDPL ++E+ L + V + S G SS SFED Y+ LA +A LVYPR+A+++R+ A+ GRAM RLL EGVLPLA DN+PR WS R E+L+GRPALAAL MQRDTLH+LYC + +RA G+ G++RN FL+ML DLG+ P SV+E HAASVF+D +RNG+P S RH G+ ++ D ++ E + +R+P RL WSLFLEAMAALAVGAVK+GQ P RR + PA PV +RP +EE+R +ET +G + GR+ P S + R TS A L ++ +E + GQS A G+ RT+ + ++ V+ P A++ + +GD+ RS+ ++A D GS K DV++ + VNV + P K V+ K++AALSPAPCHGG PS +A + C++P R AA L + D E D LRP + + P G +G+ E++ R G NS + + DDR K + AD ITMD EA C+ +FEELLEP + A Y RH K+L V+FQRYRTR GE R P S +E GCV++ G+ RF++D P L+RW +GD+IL LI+R S +RG+QRC K N GLSYFGFLEVLTRMAYA GQQPL KLLD + AL+ D GI T
Sbjct: 8 RQATLQSQDVE--NSTNSRRPSPKYSKTGSGAFSTPVVRLSKWPKNVFFASDFIADKAAAAACRKRSTGKSSRGGAAPRCRRNAGEGKTMGRGSRAMGEEAPVTRMKENSSTTVFRTSGGGGAFQQHSVRSSVDGEARRDASVAGDXXXXXXXXXXXXXXXXXXXXXGGARHEEDVVCSLCTLCREAGWMGNPLGVCPGLDPLAVEEIVMERLRRNHHTDVAWKRHSNNSGGSSRPAKHY-TDDGFSFEDFYQTLADVAGLVYPREAQEERRRAKPGRAMYRLLTEGVLPLAEDNQPRHWSPRSEMLFGRPALAALRMQRDTLHELYCIYNKDTRARDGASGLNRNQFLKMLTDLGVSPVSVTEQHAASVFDDIIRNGLPVTGPSSDGRHSWGEG----AIHEASDRGDYCLMGGERNNGVSSSSRKPGGGRLCWSLFLEAMAALAVGAVKNGQSVS---------------------------------------------PRRRRNGPA--------------------------------------------------------------------SRPVLARPE------------------------------------EEEFR------ASAET--SGGVRGRS-----------PVSSGSIWERSPTTSAAGAILQVVAADGREEVV-----AGSGQS---DAGPGR----RTSSATSSVVSAGPKAKGGASSSEE-ASGDS---------RSR--------------------------LSVIATADSAKGSCDKL-------------------------------------ADVQAATVNVNVPS-------------PNKLVNTKDVAALSPAPCHGGSPSLEVSAA----------SGGCSAPT--CRVAADLGLPSPDVEQGGGTADVILRPDPGKHSAHHVAPRGRLCAGVGGAEGSYCSAARIESTVGRGGGENSKA---LQRGIDTHDDRLKS----VGRAARADHITMDFEAAGCSVGLFEELLEPRVVATYSRHQKELLVLFQRYRTRFGGEQSRLPLSCGEETSGCVNEPGIWRFVSDFPVLRRWVQGDNILLLIVRASLQRGRQRCGKEHAGNAVGLSYFGFLEVLTRMAYAIGGQQPLHDKLLDLIHALRSEDPEGILT 895 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig127.2245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig127.2245.1 >prot_H-canaliculatus_F_contig127.2245.1 ID=prot_H-canaliculatus_F_contig127.2245.1|Name=mRNA_H-canaliculatus_F_contig127.2245.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1149bp MHHRQRQATLQRQDDELRNFSNSQRRTARYTELGPGSFSAPVARLSKWPKback to top mRNA from alignment at H-canaliculatus_F_contig127:1436..8865+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig127.2245.1 ID=mRNA_H-canaliculatus_F_contig127.2245.1|Name=mRNA_H-canaliculatus_F_contig127.2245.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=7430bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:1436..8865+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig127:1436..8865+ >mRNA_H-canaliculatus_F_contig127.2245.1 ID=mRNA_H-canaliculatus_F_contig127.2245.1|Name=mRNA_H-canaliculatus_F_contig127.2245.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig127:1436..8865+ (Hapterophycus canaliculatus Oshoro5f female)back to top |