mRNA_H-canaliculatus_F_contig12692.2241.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12692.2241.1
Unique NamemRNA_H-canaliculatus_F_contig12692.2241.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12692.2241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12692contigH-canaliculatus_F_contig12692:2983..3416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size384
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.4110782-CDS-H-canaliculatus_F_contig12692:2982..33661622928989.4110782-CDS-H-canaliculatus_F_contig12692:2982..3366Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12692 2983..3366 +
1696845640.3422472-CDS-H-canaliculatus_F_contig12692:2982..33661696845640.3422472-CDS-H-canaliculatus_F_contig12692:2982..3366Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12692 2983..3366 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.429642-UTR-H-canaliculatus_F_contig12692:3366..34161622928989.429642-UTR-H-canaliculatus_F_contig12692:3366..3416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12692 3367..3416 +
1696845640.356818-UTR-H-canaliculatus_F_contig12692:3366..34161696845640.356818-UTR-H-canaliculatus_F_contig12692:3366..3416Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12692 3367..3416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12692.2241.1prot_H-canaliculatus_F_contig12692.2241.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12692 2983..3366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12692.2241.1

>prot_H-canaliculatus_F_contig12692.2241.1 ID=prot_H-canaliculatus_F_contig12692.2241.1|Name=mRNA_H-canaliculatus_F_contig12692.2241.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
MGGGGGGGGTAGRPGVLPAEVESRTLDGAACRRHRRRRKYGATKRIQARV
ATTKNLKRTSFVCSRVRTHGRRRQRHRRCSAAALSNGRVCKPRAEQGSGD
GLRRGSQSTRLARTSDTRATDMPLCSN*
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mRNA from alignment at H-canaliculatus_F_contig12692:2983..3416+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12692.2241.1 ID=mRNA_H-canaliculatus_F_contig12692.2241.1|Name=mRNA_H-canaliculatus_F_contig12692.2241.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=434bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12692:2983..3416+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGGGGGGTGGAGGGGGGGGGGGGACAGCGGGCCGGCCTGGCGTGTT
GCCGGCAGAAGTCGAAAGTCGAACGCTTGATGGTGCTGCCTGTCGAAGGC
ACCGACGTCGACGAAAGTACGGGGCCACGAAGAGAATTCAGGCGCGGGTC
GCGACGACGAAGAATTTGAAGCGCACGAGTTTCGTGTGTTCGCGAGTGCG
CACGCACGGCAGACGACGGCAGCGGCACCGGAGATGTTCGGCAGCAGCTT
TGTCGAACGGCCGCGTGTGCAAACCGCGCGCCGAACAAGGGAGTGGAGAT
GGCTTACGCCGGGGAAGTCAGTCGACTCGTCTGGCGCGAACGAGCGACAC
ACGCGCTACCGACATGCCATTGTGCAGCAATTAAAAGATGCTACACAGCA
GTGCTTTGTCCAACCCGCATTTGCACGCACAAGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12692:2983..3416+

>mRNA_H-canaliculatus_F_contig12692.2241.1 ID=mRNA_H-canaliculatus_F_contig12692.2241.1|Name=mRNA_H-canaliculatus_F_contig12692.2241.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12692:2983..3416+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGGGGGGTGGAGGGGGGGGGGGGACAGCGGGCCGGCCTGGCGTGTT
GCCGGCAGAAGTCGAAAGTCGAACGCTTGATGGTGCTGCCTGTCGAAGGC
ACCGACGTCGACGAAAGTACGGGGCCACGAAGAGAATTCAGGCGCGGGTC
GCGACGACGAAGAATTTGAAGCGCACGAGTTTCGTGTGTTCGCGAGTGCG
CACGCACGGCAGACGACGGCAGCGGCACCGGAGATGTTCGGCAGCAGCTT
TGTCGAACGGCCGCGTGTGCAAACCGCGCGCCGAACAAGGGAGTGGAGAT
GGCTTACGCCGGGGAAGTCAGTCGACTCGTCTGGCGCGAACGAGCGACAC
ACGCGCTACCGACATGCCATTGTGCAGCAATTAAATGGGGGGGGGTGGAG
GGGGGGGGGGGACAGCGGGCCGGCCTGGCGTGTTGCCGGCAGAAGTCGAA
AGTCGAACGCTTGATGGTGCTGCCTGTCGAAGGCACCGACGTCGACGAAA
GTACGGGGCCACGAAGAGAATTCAGGCGCGGGTCGCGACGACGAAGAATT
TGAAGCGCACGAGTTTCGTGTGTTCGCGAGTGCGCACGCACGGCAGACGA
CGGCAGCGGCACCGGAGATGTTCGGCAGCAGCTTTGTCGAACGGCCGCGT
GTGCAAACCGCGCGCCGAACAAGGGAGTGGAGATGGCTTACGCCGGGGAA
GTCAGTCGACTCGTCTGGCGCGAACGAGCGACACACGCGCTACCGACATG
CCATTGTGCAGCAATTAA
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