mRNA_H-canaliculatus_F_contig12690.2239.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12690.2239.1
Unique NamemRNA_H-canaliculatus_F_contig12690.2239.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 3.700e-17
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:    7 GASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            G SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKV+
Sbjct: 1248 GVSELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVK 1286
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: D8UIY8_VOLCA (NFACT-C domain-containing protein (Fragment) n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UIY8_VOLCA)

HSP 1 Score: 62.4 bits (150), Expect = 2.030e-11
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR EDVLLFAVPVCGPY +++ YKYKV+
Sbjct:    6 AARLSVLDSLTGIPRPEDVLLFAVPVCGPYNAIQSYKYKVK 46
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A835XPK8_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XPK8_9CHLO)

HSP 1 Score: 62.4 bits (150), Expect = 3.040e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR EDVLL+AVPVCGPY +L+ YKYKV+
Sbjct: 1241 AARLSLLDALTGVPRTEDVLLYAVPVCGPYAALQSYKYKVK 1281
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A388M4N2_CHABU (CCHC-type domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M4N2_CHABU)

HSP 1 Score: 61.6 bits (148), Expect = 5.670e-10
Identity = 25/37 (67.57%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   13 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            +ELD LTG PR++DVLL+AVPVCGPY +L++YKY+V+
Sbjct: 1276 TELDSLTGVPREDDVLLYAVPVCGPYSALQNYKYRVK 1312
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A8J4GFH6_9CHLO (NFACT-C domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GFH6_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.190e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR ED+LL+AVPVCGPY +++ YKYKV+
Sbjct:  161 AARLSVLDSLTGLPRAEDLLLYAVPVCGPYTAIQSYKYKVK 201
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A150GLF7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GLF7_GONPE)

HSP 1 Score: 60.5 bits (145), Expect = 1.440e-9
Identity = 28/41 (68.29%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR ED+LL+AVPVCGPY +L  YKYKV+
Sbjct:  259 AARLSLLDSLTGVPRPEDLLLYAVPVCGPYSALMSYKYKVK 299
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A8J4GE74_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GE74_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-9
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR ED+LL+AVPVCGPY +++ YKYKV+
Sbjct: 1259 AARLSVLDSLTGLPRAEDLLLYAVPVCGPYTAIQSYKYKVK 1299
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A8J4BQQ1_9CHLO (NFACT-C domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BQQ1_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 5.050e-9
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR ED+LL+AVPVCGPY +++ YK+KV+
Sbjct:  258 AARLSVLDSLTGLPRPEDLLLYAVPVCGPYNAIQSYKFKVK 298
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A8J4FAA9_9CHLO (Uncharacterized protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4FAA9_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 5.060e-9
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            AA  S LD LTG PR ED+LL+AVPVCGPY +++ YK+KV+
Sbjct: 1245 AARLSVLDSLTGLPRPEDLLLYAVPVCGPYNAIQSYKFKVK 1285
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BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Match: A0A6A5BZE0_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BZE0_NAEFO)

HSP 1 Score: 58.9 bits (141), Expect = 5.070e-9
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   13 SELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR 123
            +E+D LTG+PR++D+ LFA+PVC PY SL++Y YKV+
Sbjct: 1053 TEIDSLTGQPREDDIFLFAIPVCAPYASLKNYTYKVK 1089
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12690.2239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI3.700e-1794.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8UIY8_VOLCA2.030e-1170.73NFACT-C domain-containing protein (Fragment) n=1 T... [more]
A0A835XPK8_9CHLO3.040e-1070.73Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A388M4N2_CHABU5.670e-1067.57CCHC-type domain-containing protein n=1 Tax=Chara ... [more]
A0A8J4GFH6_9CHLO1.190e-965.85NFACT-C domain-containing protein n=1 Tax=Volvox r... [more]
A0A150GLF7_GONPE1.440e-968.29Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A8J4GE74_9CHLO1.450e-965.85Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A8J4BQQ1_9CHLO5.050e-963.41NFACT-C domain-containing protein n=1 Tax=Volvox a... [more]
A0A8J4FAA9_9CHLO5.060e-963.41Uncharacterized protein n=2 Tax=Volvox africanus T... [more]
A0A6A5BZE0_NAEFO5.070e-959.46Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12690contigH-canaliculatus_F_contig12690:3297..3419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue7e-14
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.2567945-CDS-H-canaliculatus_F_contig12690:3296..34191622928989.2567945-CDS-H-canaliculatus_F_contig12690:3296..3419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 3297..3419 +
1696845640.2927942-CDS-H-canaliculatus_F_contig12690:3296..34191696845640.2927942-CDS-H-canaliculatus_F_contig12690:3296..3419Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12690 3297..3419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12690.2239.1prot_H-canaliculatus_F_contig12690.2239.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12690 3297..3419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12690.2239.1

>prot_H-canaliculatus_F_contig12690.2239.1 ID=prot_H-canaliculatus_F_contig12690.2239.1|Name=mRNA_H-canaliculatus_F_contig12690.2239.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=41bp
AAGASELDRLTGKPRDEDVLLFAVPVCGPYMSLRDYKYKVR
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mRNA from alignment at H-canaliculatus_F_contig12690:3297..3419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12690.2239.1 ID=mRNA_H-canaliculatus_F_contig12690.2239.1|Name=mRNA_H-canaliculatus_F_contig12690.2239.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=123bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12690:3297..3419+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCCGGCGCGAGCGAGCTCGACCGCCTGACCGGCAAGCCTCGGGACGA
GGACGTTCTGCTCTTCGCCGTGCCCGTGTGCGGTCCGTACATGAGCCTGC
GGGACTACAAGTACAAGGTGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12690:3297..3419+

>mRNA_H-canaliculatus_F_contig12690.2239.1 ID=mRNA_H-canaliculatus_F_contig12690.2239.1|Name=mRNA_H-canaliculatus_F_contig12690.2239.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=246bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12690:3297..3419+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGCCGGCGCGAGCGAGCTCGACCGCCTGACCGGCAAGCCTCGGGACGA
GGACGTTCTGCTCTTCGCCGTGCCCGTGTGCGGTCCGTACATGAGCCTGC
GGGACTACAAGTACAAGGTGAGGGCGGCCGGCGCGAGCGAGCTCGACCGC
CTGACCGGCAAGCCTCGGGACGAGGACGTTCTGCTCTTCGCCGTGCCCGT
GTGCGGTCCGTACATGAGCCTGCGGGACTACAAGTACAAGGTGAGG
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