mRNA_H-canaliculatus_F_contig1269.2235.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1269.2235.1
Unique NamemRNA_H-canaliculatus_F_contig1269.2235.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1269.2235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1269contigH-canaliculatus_F_contig1269:11294..11749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size458
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.1020193-UTR-H-canaliculatus_F_contig1269:11293..113441622928988.1020193-UTR-H-canaliculatus_F_contig1269:11293..11344Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1269 11294..11344 +
1696845640.0488868-UTR-H-canaliculatus_F_contig1269:11293..113441696845640.0488868-UTR-H-canaliculatus_F_contig1269:11293..11344Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1269 11294..11344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.1264632-CDS-H-canaliculatus_F_contig1269:11344..117491622928988.1264632-CDS-H-canaliculatus_F_contig1269:11344..11749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1269 11345..11749 +
1696845640.0597458-CDS-H-canaliculatus_F_contig1269:11344..117491696845640.0597458-CDS-H-canaliculatus_F_contig1269:11344..11749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1269 11345..11749 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1269.2235.1prot_H-canaliculatus_F_contig1269.2235.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1269 11345..11749 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1269.2235.1

>prot_H-canaliculatus_F_contig1269.2235.1 ID=prot_H-canaliculatus_F_contig1269.2235.1|Name=mRNA_H-canaliculatus_F_contig1269.2235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=135bp
MGKSSLVRPSGPLSNIDGGVKDMPSAAGCAAVFAAGSALPGAGGQEDKNG
GSRQPSSNITGLRVPGGEGSGGKEREIDCSSGSGVDQVTGERKDRRIPAD
IADHDATPCDSTTNTSATATVATESSAASVPGRNE
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mRNA from alignment at H-canaliculatus_F_contig1269:11294..11749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1269.2235.1 ID=mRNA_H-canaliculatus_F_contig1269.2235.1|Name=mRNA_H-canaliculatus_F_contig1269.2235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=456bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1269:11294..11749+ (Hapterophycus canaliculatus Oshoro5f female)
CGACAAAACAAAATGTGACATCCAGCTCCAGTATTCGGGTCACCCCTATC
GATGGGGAAATCTTCTCTTGTCCGCCCGTCGGGTCCTCTTTCAAACATTG
ATGGTGGGGTGAAAGATATGCCGTCCGCCGCCGGTTGTGCCGCGGTTTTC
GCTGCTGGTTCGGCACTCCCAGGAGCAGGGGGTCAGGAAGACAAGAATGG
AGGATCGCGACAGCCCTCGTCCAACATCACAGGACTACGTGTGCCAGGAG
GCGAAGGATCTGGTGGCAAAGAACGTGAGATCGATTGCAGTTCGGGGTCG
GGCGTGGATCAGGTAACTGGGGAGAGAAAAGATCGCCGAATTCCCGCCGA
CATCGCAGACCACGACGCCACGCCTTGTGATAGCACCACCAACACCAGCG
CCACCGCCACGGTCGCCACCGAGTCTTCTGCTGCTTCGGTTCCTGGTCGC
AATGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1269:11294..11749+

>mRNA_H-canaliculatus_F_contig1269.2235.1 ID=mRNA_H-canaliculatus_F_contig1269.2235.1|Name=mRNA_H-canaliculatus_F_contig1269.2235.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=810bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1269:11294..11749+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGAAATCTTCTCTTGTCCGCCCGTCGGGTCCTCTTTCAAACATTGA
TGGTGGGGTGAAAGATATGCCGTCCGCCGCCGGTTGTGCCGCGGTTTTCG
CTGCTGGTTCGGCACTCCCAGGAGCAGGGGGTCAGGAAGACAAGAATGGA
GGATCGCGACAGCCCTCGTCCAACATCACAGGACTACGTGTGCCAGGAGG
CGAAGGATCTGGTGGCAAAGAACGTGAGATCGATTGCAGTTCGGGGTCGG
GCGTGGATCAGGTAACTGGGGAGAGAAAAGATCGCCGAATTCCCGCCGAC
ATCGCAGACCACGACGCCACGCCTTGTGATAGCACCACCAACACCAGCGC
CACCGCCACGGTCGCCACCGAGTCTTCTGCTGCTTCGGTTCCTGGTCGCA
ATGAGATGGGGAAATCTTCTCTTGTCCGCCCGTCGGGTCCTCTTTCAAAC
ATTGATGGTGGGGTGAAAGATATGCCGTCCGCCGCCGGTTGTGCCGCGGT
TTTCGCTGCTGGTTCGGCACTCCCAGGAGCAGGGGGTCAGGAAGACAAGA
ATGGAGGATCGCGACAGCCCTCGTCCAACATCACAGGACTACGTGTGCCA
GGAGGCGAAGGATCTGGTGGCAAAGAACGTGAGATCGATTGCAGTTCGGG
GTCGGGCGTGGATCAGGTAACTGGGGAGAGAAAAGATCGCCGAATTCCCG
CCGACATCGCAGACCACGACGCCACGCCTTGTGATAGCACCACCAACACC
AGCGCCACCGCCACGGTCGCCACCGAGTCTTCTGCTGCTTCGGTTCCTGG
TCGCAATGAG
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