mRNA_H-canaliculatus_F_contig1261.2191.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1261.2191.1
Unique NamemRNA_H-canaliculatus_F_contig1261.2191.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Match: D8LTM7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 4.320e-50
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 MVHLGTVVSGAGLLVLLHAGYSAAHFQQFKKAXXXXXXXXXDSAPIDAALEALIGFFVCVFGVLFSAGALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRKRLAS 324
            MVHLGTVVS AGLL+LLHAGYSAAHFQQFKK          DSAP+DAALEAL+GFFVCVFGVL+SA ALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLR+R+AS
Sbjct:    1 MVHLGTVVSAAGLLILLHAGYSAAHFQQFKKPSSALGGGGGDSAPLDAALEALVGFFVCVFGVLYSADALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRRRVAS 108
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BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Match: A0A836CBS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBS2_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.900e-26
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = 1 
Query:    1 MVHLGTVVSGAGLLVLLHAGYSAAHFQQFKKAXXXXXXXXXDSAPIDAALEALIGFFVCVFGVLFSAGALLPIKGAAGGGKSLDSAESTREFEVFEHRGRSLRKR 315
            MV LGT+V+G GLLVLLHAGYSAAH++QF  A         D+ P+DA +E ++GF +CV GV+ +AG +LP++G AGGG+S D+ E    F VF HR   LR+R
Sbjct:    1 MVKLGTIVAGLGLLVLLHAGYSAAHYRQFIVAAEGEAAPAEDAPPLDAVVETIVGFLLCVAGVVSAAGQMLPVRGPAGGGRSADAHEGLPGFAVFSHRAVQLRRR 105
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BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Match: A0A7S2V2I7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.810e-14
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   13 GTVVSGAGLLVLLHAGYSAAHFQQFKKAXXXXXXXXXDSAP-IDAALEALIGFFVCVFGVLFSAGALLPIKGAAGGGK-SLDSAESTREFEVFEHRGRSLRKRL 318
            GTV+   G+ +LLHAGYSAAHF+    +          S P +D  +   IGF VC+ GVL SA  L PI  + G G+ S D   S+ EF +F HRG++L KRL
Sbjct:    4 GTVIILIGMAILLHAGYSAAHFKSLVVSSVHGADLSNVSIPPVDVVVGCAIGFSVCLLGVLTSAAPLKPIVASHGAGQGSFDEMASSPEFNIFNHRGKALSKRL 107
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BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Match: A0A3M6VHM6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHM6_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.340e-7
Identity = 33/109 (30.28%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:    1 MVHLGTVVSGAGLLVLLHAGYSAAHFQQFKKAXXXXXXXXXDSAPIDAALEALIGFFVCVFGVLFSAGALLPIKGA-AGGGKSLDSAESTREFEVFEHRGRSLRKRLAS 324
            M  +G ++   G L+L+HA Y +  ++ + K+            P +  +E ++ F + + GVL ++G +LPI+   A   +SL +  S+ +F VF HRG++L KR+ S
Sbjct:    1 MAIIGKLLIAMGTLLLVHASYYSVQYETYAKSTETLDAPMP---PFEVVVELVVSFLISLVGVLLTSGEMLPIRSNDALHSRSLATVISSPDFHVFNHRGKTLHKRVIS 106
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BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Match: A0A0L7QXM4_9HYME (Membrane magnesium transporter n=2 Tax=Apoidea TaxID=34735 RepID=A0A0L7QXM4_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 4.970e-5
Identity = 30/94 (31.91%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   34 GLLVLLHAGYSAAHFQQFKKAXXXXXXXXXDSAPIDAALEALIGFFVCVFGVLFSAGALLPIKGAAG-GGKSLDSAESTREFEVFEHRGRSLRK 312
            GLL +LHA YSAA  + + +           + PID  ++ +   F+ ++GV++ AG    I+       KS ++  +   F++F HRGRSLR+
Sbjct:   29 GLLSILHAAYSAAQHRSYLRITEQEFT----TLPIDILIQGIASLFMVMYGVMYIAGDFKEIRAVVDLENKSWETLRNLPSFQIFNHRGRSLRR 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1261.2191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTM7_ECTSI4.320e-5083.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CBS2_9STRA4.900e-2652.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V2I7_9STRA3.810e-1444.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3M6VHM6_9STRA7.340e-730.28Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0L7QXM4_9HYME4.970e-531.91Membrane magnesium transporter n=2 Tax=Apoidea Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1261contigH-canaliculatus_F_contig1261:8896..10268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog115417.EPrPW00000016196
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016021,GO:0022857,GO:0022890,GO:0030176,GO:0031224,GO:0031227,GO:0031410,GO:0031982,GO:0031984,GO:0032991,GO:0034220,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072546,GO:0097708,GO:0098655,GO:0098796,GO:0098827
EggNOG free text desc.11 kDa salivary protein. Source PGD
EggNOG OGs1MHPA@121069,2S1Q8@2759,KOG3918@1
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionMagnesium transporter
Ec32 orthologEc-28_003510.1
Exons1
Model size1373
Cds size342
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.1984513-CDS-H-canaliculatus_F_contig1261:8895..92371622928981.1984513-CDS-H-canaliculatus_F_contig1261:8895..9237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1261 8896..9237 +
1696845637.3880622-CDS-H-canaliculatus_F_contig1261:8895..92371696845637.3880622-CDS-H-canaliculatus_F_contig1261:8895..9237Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1261 8896..9237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.2166984-UTR-H-canaliculatus_F_contig1261:9237..102681622928981.2166984-UTR-H-canaliculatus_F_contig1261:9237..10268Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1261 9238..10268 +
1696845637.4022238-UTR-H-canaliculatus_F_contig1261:9237..102681696845637.4022238-UTR-H-canaliculatus_F_contig1261:9237..10268Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1261 9238..10268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1261.2191.1prot_H-canaliculatus_F_contig1261.2191.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1261 8896..9237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1261.2191.1

>prot_H-canaliculatus_F_contig1261.2191.1 ID=prot_H-canaliculatus_F_contig1261.2191.1|Name=mRNA_H-canaliculatus_F_contig1261.2191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
MVHLGTVVSGAGLLVLLHAGYSAAHFQQFKKASSSAGGGGGDSAPIDAAL
EALIGFFVCVFGVLFSAGALLPIKGAAGGGKSLDSAESTREFEVFEHRGR
SLRKRLASAGRSS*
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mRNA from alignment at H-canaliculatus_F_contig1261:8896..10268+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1261.2191.1 ID=mRNA_H-canaliculatus_F_contig1261.2191.1|Name=mRNA_H-canaliculatus_F_contig1261.2191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1373bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1261:8896..10268+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGCATCTCGGGACCGTGGTGTCCGGCGCTGGCCTTCTCGTCCTCCT
CCACGCCGGTTACTCTGCGGCGCACTTCCAGCAGTTCAAGAAAGCTTCGT
CTTCCGCCGGCGGCGGAGGCGGAGACTCGGCCCCGATCGACGCTGCCCTC
GAGGCCCTCATCGGCTTCTTCGTCTGCGTTTTCGGAGTGTTGTTTAGCGC
GGGTGCACTCCTACCCATCAAGGGGGCGGCGGGGGGCGGAAAGTCGTTAG
ACTCGGCAGAGTCGACACGGGAATTCGAGGTATTCGAGCACAGGGGAAGA
TCGCTCAGGAAACGATTGGCGTCGGCGGGACGTTCGAGTTAGCGTTGGCT
CGAATCAGCGGTTTGACTTGAGTTCTTGTCCCTACCGTCTTGTTTTCCTG
TGCCCGTTTGTGCGTTTGTGGTGGTCGGGCCGGGTCATAGTCGATGGATA
ATATTCTGGTAAATTTCATTTGTTGTTGGTTTGTTGCTTTGTTTGCTCTT
TGGATTTTCATGTTTTTCGTGTTTTGAGCGATTGAGATTATGTCCACGAG
TATGTTCCTCAAGATGTCAAAAGCCTTTGGTTTGGGGTGACCGCCTTTGA
AACAGGCGTTCCGGTGCTCGCAACATCAGTGGTTTACCTGTAAATGCCAA
GGCTGGTTGTCTGGGCCCATCACCTTGTCTGAGAGCACTTTGTGTGAGAG
GGCCTGTTGGTGGCCGCGTATCTAGCGTTTGCAGGATGTACATCATGGTT
CATATCTGGGTTGCGTTGGGATCAGCTACGGACCAGCTGCTGCGCGCACG
TTTTGTTTGAACGCGACTCAAGGGATCCTTTGAAATGCATGAGTGGCGAT
GATTCGCTTGATCCGTTTGCTCGATGACCATATCGAGCTGAATTGGCGGT
GGACGCGATGAACGCGAGAATACGTTGAAATCAAAATAGCGCTCGTTACG
GATGTCAAGCTGAACTTGTTCTACGATGAGCTCTCTTCAACCCGACGGAC
ATCTTCAATCCTTGGGTCACCCGAAAAGAAATAACGTTGCCAACCCTGCA
GACGGTAAGGCTGTTTACTCCGGCAAACGATGGCGCTAGCAAGCTTCCGG
TGTCCATCTTTCGGCGCCGCGAGTTGCAGAAGGTGCGGATGTTGAACAGG
GCATTCCAAATGTAAGAAAAAAAGACGTGTGCATGACACTGAAGTACCGT
CAAGGGGACGCAGTTGCTTGAGGGAAGTAAGAATGGGCGTCTTTGCGGAA
GACACACATGGGAGAAGCCCCGAAAATACTGCGACTTTTTTTGGCGAGTT
TTCCCGTCTATCGATCTGTCGAGCATGAAATGTTTCCCGCACCAAGTTGC
AAGCTTCCCGTGATTACAGGAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1261:8896..10268+

>mRNA_H-canaliculatus_F_contig1261.2191.1 ID=mRNA_H-canaliculatus_F_contig1261.2191.1|Name=mRNA_H-canaliculatus_F_contig1261.2191.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1261:8896..10268+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGCATCTCGGGACCGTGGTGTCCGGCGCTGGCCTTCTCGTCCTCCT
CCACGCCGGTTACTCTGCGGCGCACTTCCAGCAGTTCAAGAAAGCTTCGT
CTTCCGCCGGCGGCGGAGGCGGAGACTCGGCCCCGATCGACGCTGCCCTC
GAGGCCCTCATCGGCTTCTTCGTCTGCGTTTTCGGAGTGTTGTTTAGCGC
GGGTGCACTCCTACCCATCAAGGGGGCGGCGGGGGGCGGAAAGTCGTTAG
ACTCGGCAGAGTCGACACGGGAATTCGAGGTATTCGAGCACAGGGGAAGA
TCGCTCAGGAAACGATTGGCGTCGGCGGGACGTTCGAGTTAGATGGTGCA
TCTCGGGACCGTGGTGTCCGGCGCTGGCCTTCTCGTCCTCCTCCACGCCG
GTTACTCTGCGGCGCACTTCCAGCAGTTCAAGAAAGCTTCGTCTTCCGCC
GGCGGCGGAGGCGGAGACTCGGCCCCGATCGACGCTGCCCTCGAGGCCCT
CATCGGCTTCTTCGTCTGCGTTTTCGGAGTGTTGTTTAGCGCGGGTGCAC
TCCTACCCATCAAGGGGGCGGCGGGGGGCGGAAAGTCGTTAGACTCGGCA
GAGTCGACACGGGAATTCGAGGTATTCGAGCACAGGGGAAGATCGCTCAG
GAAACGATTGGCGTCGGCGGGACGTTCGAGTTAG
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