mRNA_H-canaliculatus_F_contig1260.2184.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1260.2184.1 vs. uniprot
Match: D8LQ22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ22_ECTSI) HSP 1 Score: 598 bits (1542), Expect = 3.270e-204 Identity = 386/701 (55.06%), Postives = 441/701 (62.91%), Query Frame = 1
Query: 1 ILMAKCERLRQAYSDYKHLSTDNLSFVAGLRGRPVPAPVADSGHHRSRLKPKTCVSHEEEDKVKDDD--DSSLETQAARQACPGRSCVPRAEKLEAMMEKRVAAQTARHRAQSKLGSARDRSQDAETKLVEAKAELIRMSKAITEGNERMEALRNTLRNEGSINKGVAEELDVLLVAAVNLRREFTVDTLPPRPSTPIVPPDD--DIDEISTYEQDG-ALESPITAPGQQLVEPMQHQQQATRRIAGGA-----------HCGGREWIHSGQLKHTGIFIRPPRPGNSSSNGNTDHRHNPPFQHEVNGKIHNSKSNSXXXXXXXXXXSPSGSLPALGANPGDAGAMKDDPGSAALVLTGAVGVTIAHDGEEGEGTD------DMGRVARGRAGIRCEGEDAWSCCGKTVVSAGRGCEPREPLATPEDLLLDTMDLRSRLGHPLDFRDYLPRTAWLGLSPDALHPFACSPSEGTLRPHTAPERLMDTAGRGAAQSKGRG----EYDRRAARSRNGGLIGGVWASGGRRRRGDRGGLERAFSPSPDSGVNAWWKDEMADQRWG--LSSNTSGRTSRGRGSGQGAGGVASSPKRHEFLLRSQPNATTATIAKSRS-TSLSGGENPKIGRIPRPEGGGVTGGTAACAATFAGAARIDGSLPRTQILGMNGGGLPREVRQAPINRPLTAPCGKVGQRRVRTRGATR 2016
+LMAKCERLRQAYSDYKHLSTDNLSFVAGLRGRPVPAP AD G + R +PK + ED DSSLE+Q A+QACP RSC PR +KLEAM EKRVAAQTAR +AQS+LGSAR+RSQ+AETKL EAKAEL+RM+KAI EG+ER EAL++TLRNEGSINK VAEELD+LLV A+NLRREF VDTLPPRP+T IVP D+ + ++ +Y++DG +LESP+ APGQQL+ R GG H G REWIHSG+L HTGIF+RPPRP + G XXXXXXXXXX DG EG G + D G ++GR+ EGEDAWSCCGK V+SAGRGCEPREPLATPEDLLLDT+D RSRLG PLDFRD+LP+ AWLGLSPD + P SP +GTLRPHTAPERL D AG+ + Q G EYDRRA+RSRNGGL+GGVWASGGRRRRG GGL A PS DSGVN WWK++ QR G S AG PKRH FL RS P ATTAT A SRS T+ + G+ AA +D PRTQILGMNGG LP VRQ PI+RPLTAPCGKVG+RRVRTRG +
Sbjct: 3 VLMAKCERLRQAYSDYKHLSTDNLSFVAGLRGRPVPAPGADLGRCKVRRRPKPDDVPKSEDXXXXXXXXDSSLESQGAKQACPSRSCAPRVDKLEAMTEKRVAAQTARQKAQSRLGSARERSQEAETKLEEAKAELVRMTKAIAEGDERTEALQDTLRNEGSINKAVAEELDMLLVEAMNLRREFVVDTLPPRPTTVIVPVDEGEEDNDAPSYQEDGRSLESPVIAPGQQLLA----------RDGGGKGXXXXXXXXXPHDGSREWIHSGRLAHTGIFVRPPRP-------------------KSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAATGRDGGEGVGVEAEAAAGDYGGGSKGRS----EGEDAWSCCGKPVLSAGRGCEPREPLATPEDLLLDTIDPRSRLGQPLDFRDFLPQIAWLGLSPDPVRPLPGSPGDGTLRPHTAPERLTDAAGQWSPQGWAGGDANREYDRRASRSRNGGLVGGVWASGGRRRRGPGGGLGVAHPPSLDSGVNTWWKNKTPHQRGGRXXXXXXXXXXXXXXXSRTEAGEAPLLPKRHAFLRRSHPTATTATYASSRSGTTRNNGDARTXXXXXXXXXXXXX-----XXXXXXXAAGVDEFWPRTQILGMNGGRLPTRVRQVPIDRPLTAPCGKVGRRRVRTRGGNK 665 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1260.2184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1260.2184.1 >prot_H-canaliculatus_F_contig1260.2184.1 ID=prot_H-canaliculatus_F_contig1260.2184.1|Name=mRNA_H-canaliculatus_F_contig1260.2184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=675bp MAKCERLRQAYSDYKHLSTDNLSFVAGLRGRPVPAPVADSGHHRSRLKPKback to top mRNA from alignment at H-canaliculatus_F_contig1260:6846..15025- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1260.2184.1 ID=mRNA_H-canaliculatus_F_contig1260.2184.1|Name=mRNA_H-canaliculatus_F_contig1260.2184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8180bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1260:6846..15025- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1260:6846..15025- >mRNA_H-canaliculatus_F_contig1260.2184.1 ID=mRNA_H-canaliculatus_F_contig1260.2184.1|Name=mRNA_H-canaliculatus_F_contig1260.2184.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4050bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1260:6846..15025- (Hapterophycus canaliculatus Oshoro5f female)back to top |