mRNA_H-canaliculatus_F_contig1257.2158.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1257.2158.1
Unique NamemRNA_H-canaliculatus_F_contig1257.2158.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1257.2158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1257contigH-canaliculatus_F_contig1257:2861..4166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue5.5e-07
Seed eggNOG ortholog2880.D8LRN1
KEGG koko:K20628
EggNOG OGs2D16Q@1,2SGXE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Exons2
Model size786
Cds size309
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1257.2158.1prot_H-canaliculatus_F_contig1257.2158.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1257 2861..3691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.8557377-CDS-H-canaliculatus_F_contig1257:2860..29451622928971.8557377-CDS-H-canaliculatus_F_contig1257:2860..2945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 2861..2945 +
1696845635.1591418-CDS-H-canaliculatus_F_contig1257:2860..29451696845635.1591418-CDS-H-canaliculatus_F_contig1257:2860..2945Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 2861..2945 +
1622928971.8700905-CDS-H-canaliculatus_F_contig1257:3467..36911622928971.8700905-CDS-H-canaliculatus_F_contig1257:3467..3691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 3468..3691 +
1696845635.1695693-CDS-H-canaliculatus_F_contig1257:3467..36911696845635.1695693-CDS-H-canaliculatus_F_contig1257:3467..3691Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 3468..3691 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.8838904-UTR-H-canaliculatus_F_contig1257:3691..41661622928971.8838904-UTR-H-canaliculatus_F_contig1257:3691..4166Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1257 3692..4166 +
1696845635.1779563-UTR-H-canaliculatus_F_contig1257:3691..41661696845635.1779563-UTR-H-canaliculatus_F_contig1257:3691..4166Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1257 3692..4166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1257.2158.1

>prot_H-canaliculatus_F_contig1257.2158.1 ID=prot_H-canaliculatus_F_contig1257.2158.1|Name=mRNA_H-canaliculatus_F_contig1257.2158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
VRRLGEELNNDGEYEDGCYDLVLQGEEEGFCSNGVPGVDDGGDICCKLDC
GGECSNFGCSQRDGDVTVDDCCVTHIEQAGVLCSEDQGAPCIMSDGYTRL
HS*
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mRNA from alignment at H-canaliculatus_F_contig1257:2861..4166+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1257.2158.1 ID=mRNA_H-canaliculatus_F_contig1257.2158.1|Name=mRNA_H-canaliculatus_F_contig1257.2158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1306bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1257:2861..4166+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGCCGCCTCGGCGAGGAGCTGAACAACGACGGGGAATACGAGGATGG
CTGCTACGACCTCGTCCTGCAAGGCGAGGAAGAAGGTGGGTACATCGAGC
GATATCCGAAAAGACATGTGACTTTGCTCATTCCTCGCCTGCGACGTTCC
ATCCGCAACCTTGTGCACGTGCGTGCATTGATGAGGAAACAAACGCTCGG
CCCTTGACAGCTGGAAACGGCCATCATGCTGCTGAGCACCATGCGAACGT
CGCCAGGAGCACCTCACGCGGCGTTGCGCACTACATCCTCGAAGTGGCTC
TTGCTCCATCCACGGTGCTTGCGTTTCAGGCCATTCAGGAGAAAATGTCG
CTTGACCCGCGGGGCTTTCGATTTAGTCTTCCTCGTCGTCTCCTCCGGTG
CGGCGTCGGACCGGCGGCATGGATTGCTGTGCCCATGCCTTGTGCCAGTC
GAGGGCATTTCTGTTTTCAGCCGCTGGCTTTCCCCCGTACCGCCGTCTTC
ACTTCGGCTGCATCGCTTGTTTCCCCGATGTCTGGCCTATTCGTACGCTC
ATGTCATATGTTGTCTTGCCATCGAACCTGGGCCGGTCTCTCCCCTTCTG
CCGTCAGGGTTTTGCAGCAATGGTGTCCCTGGGGTTGACGACGGGGGAGA
TATTTGCTGCAAGCTCGACTGTGGTGGCGAATGCAGCAATTTCGGCTGCT
CGCAGCGCGACGGTGACGTCACGGTCGATGACTGCTGCGTAACGCACATA
GAACAAGCTGGCGTGCTGTGCTCCGAGGACCAAGGCGCCCCCTGCATAAT
GAGTGATGGCTACACTCGTTTGCACAGTTGAAATTTGAACGCGACGACAT
ATTCGCCGATATTTGGCGCCAATGCTTAGTTCAGCACCACCCTAAAGACT
ACCCCCGGAGTGTTCGTAGCAAAATGGACGAAAGGGTGCCATGTGGGGCT
TCCGGAAAGCACCTGGGACTTTGGCCCCGCACCGACTCGACTCAAAGTAG
ACTACAACCAAGGTGCCTACTGGAGGTTTGAAGGTGGTTCTAGGAAAAAA
ACAAAAATCGACCAAACACTGTTGTGCTTCCTGCAGAAGCCATATGTATA
CCAGGACAGGCGGTCTTGTCAAAAGCCAACAGAAGCATCGACAACGACGA
CGCGGCAAATGCCGCCGTCGTACCTCGGTATTGCTTTCACTTCTGGGTGT
ATACGTCCGGTGTTTGACGGTATTCTCTCATAGACAGCGGTGTTTTGCTC
AAGACGACGGCTTGCCAAGTCCGGTACGAGTTTTCGGCTAGGTGTGTGGC
GTCCAT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1257:2861..4166+

>mRNA_H-canaliculatus_F_contig1257.2158.1 ID=mRNA_H-canaliculatus_F_contig1257.2158.1|Name=mRNA_H-canaliculatus_F_contig1257.2158.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1257:2861..4166+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGCCGCCTCGGCGAGGAGCTGAACAACGACGGGGAATACGAGGATGG
CTGCTACGACCTCGTCCTGCAAGGCGAGGAAGAAGGTCCGCCGCCTCGGC
GAGGAGCTGAACAACGACGGGGAATACGAGGATGGCTGCTACGACCTCGT
CCTGCAAGGCGAGGAAGAAGGGTTTTGCAGCAATGGTGTCCCTGGGGTTG
ACGACGGGGGAGATATTTGCTGCAAGCTCGACTGTGGTGGCGAATGCAGC
AATTTCGGCTGCTCGCAGCGCGACGGTGACGTCACGGTCGATGACTGCTG
CGTAACGCACATAGAACAAGCTGGCGTGCTGTGCTCCGAGGACCAAGGCG
CCCCCTGCATAATGAGTGATGGCTACACTCGTTTGCACAGTTGAGGTTTT
GCAGCAATGGTGTCCCTGGGGTTGACGACGGGGGAGATATTTGCTGCAAG
CTCGACTGTGGTGGCGAATGCAGCAATTTCGGCTGCTCGCAGCGCGACGG
TGACGTCACGGTCGATGACTGCTGCGTAACGCACATAGAACAAGCTGGCG
TGCTGTGCTCCGAGGACCAAGGCGCCCCCTGCATAATGAGTGATGGCTAC
ACTCGTTTGCACAGTTGA
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