mRNA_H-canaliculatus_F_contig1257.2157.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1257.2157.1
Unique NamemRNA_H-canaliculatus_F_contig1257.2157.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1257.2157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1257contigH-canaliculatus_F_contig1257:531..1311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.7e-08
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
EC2.7.7.19
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.770922-CDS-H-canaliculatus_F_contig1257:530..6151622928971.770922-CDS-H-canaliculatus_F_contig1257:530..615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 531..615 +
1696845635.1322243-CDS-H-canaliculatus_F_contig1257:530..6151696845635.1322243-CDS-H-canaliculatus_F_contig1257:530..615Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 531..615 +
1622928971.7934546-CDS-H-canaliculatus_F_contig1257:1107..13101622928971.7934546-CDS-H-canaliculatus_F_contig1257:1107..1310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 1108..1310 +
1696845635.1480203-CDS-H-canaliculatus_F_contig1257:1107..13101696845635.1480203-CDS-H-canaliculatus_F_contig1257:1107..1310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1257 1108..1310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1257.2157.1prot_H-canaliculatus_F_contig1257.2157.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1257 531..1310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1257.2157.1

>prot_H-canaliculatus_F_contig1257.2157.1 ID=prot_H-canaliculatus_F_contig1257.2157.1|Name=mRNA_H-canaliculatus_F_contig1257.2157.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=96bp
VRRLGEELNNDGDYVDGCYDLVLQGEEEGFCSNGVPGVDDGGDICCKLEC
GDECGGAGCAQHDGDVTAEECCVRHIRTAKLLCSETQGAPCIMSGD
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mRNA from alignment at H-canaliculatus_F_contig1257:531..1311+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1257.2157.1 ID=mRNA_H-canaliculatus_F_contig1257.2157.1|Name=mRNA_H-canaliculatus_F_contig1257.2157.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=781bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1257:531..1311+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGCCGCCTCGGCGAGGAGCTGAACAACGACGGGGACTACGTGGATGG
CTGCTACGACCTCGTCCTGCAAGGCGAGGAAGAAGGTGGGTACATCGAGC
GATATCCGAAAAGACATGTGGTTTTGCTCATTCCTCGCCTGCGACGTTCC
ATTCGCAACCTTATGCACGTGCGTGCATTGATGAGGAAACAAACGCTCGG
CCCTTGAGGTGCCTGACACGGAAGTCGTCAGTAGAACCTCACTGGGCGTT
GTACACGGCCTCTCTGGAGAGCCTGTCGTTTTATCCATGGTTCGCTCTCT
TACCAGTCTGCGTCGCAGTCTCGTCCGATCACTATTGCCACACGCACCAA
ATGACAAGGACGCGCGTAGTTCACACCCGCGACATGGACGACGGTACCTA
CGCCTTCAGCTCCTCCACCACACGTCTGTTCGAATCCTCCTGGACTTCTT
TGACCTGTATCGCTGTCTTCGCTTCAGCTCCGTCCCCAGCTCTGCAACCG
GTATGACCTGCGGTGCATGCATAGCGCCTGATGCCCTTGTATCGAACGTG
ATCTCCCCGCTCTCCTCCACTTGCCAGGATTTTGTAGTAATGGCGTCCCC
GGTGTGGACGACGGGGGAGATATTTGCTGCAAGCTCGAGTGTGGGGACGA
ATGTGGCGGTGCTGGCTGTGCGCAGCACGACGGCGACGTTACGGCAGAAG
AATGCTGTGTAAGGCACATAAGAACAGCCAAGCTGCTGTGCTCCGAGACC
CAGGGTGCCCCCTGCATCATGAGCGGTGACT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1257:531..1311+

>mRNA_H-canaliculatus_F_contig1257.2157.1 ID=mRNA_H-canaliculatus_F_contig1257.2157.1|Name=mRNA_H-canaliculatus_F_contig1257.2157.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=576bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1257:531..1311+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGCCGCCTCGGCGAGGAGCTGAACAACGACGGGGACTACGTGGATGG
CTGCTACGACCTCGTCCTGCAAGGCGAGGAAGAAGGTCCGCCGCCTCGGC
GAGGAGCTGAACAACGACGGGGACTACGTGGATGGCTGCTACGACCTCGT
CCTGCAAGGCGAGGAAGAAGGATTTTGTAGTAATGGCGTCCCCGGTGTGG
ACGACGGGGGAGATATTTGCTGCAAGCTCGAGTGTGGGGACGAATGTGGC
GGTGCTGGCTGTGCGCAGCACGACGGCGACGTTACGGCAGAAGAATGCTG
TGTAAGGCACATAAGAACAGCCAAGCTGCTGTGCTCCGAGACCCAGGGTG
CCCCCTGCATCATGAGCGGTGACGATTTTGTAGTAATGGCGTCCCCGGTG
TGGACGACGGGGGAGATATTTGCTGCAAGCTCGAGTGTGGGGACGAATGT
GGCGGTGCTGGCTGTGCGCAGCACGACGGCGACGTTACGGCAGAAGAATG
CTGTGTAAGGCACATAAGAACAGCCAAGCTGCTGTGCTCCGAGACCCAGG
GTGCCCCCTGCATCATGAGCGGTGAC
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