mRNA_H-canaliculatus_F_contig12481.2099.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12481.2099.1
Unique NamemRNA_H-canaliculatus_F_contig12481.2099.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12481.2099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12481contigH-canaliculatus_F_contig12481:806..1553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size736
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12481.2099.1prot_H-canaliculatus_F_contig12481.2099.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12481 1169..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.3356988-UTR-H-canaliculatus_F_contig12481:805..11041622928963.3356988-UTR-H-canaliculatus_F_contig12481:805..1104Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 806..1104 +
1696845631.8659804-UTR-H-canaliculatus_F_contig12481:805..11041696845631.8659804-UTR-H-canaliculatus_F_contig12481:805..1104Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 806..1104 +
1622928963.3491454-UTR-H-canaliculatus_F_contig12481:1116..11681622928963.3491454-UTR-H-canaliculatus_F_contig12481:1116..1168Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 1117..1168 +
1696845631.877303-UTR-H-canaliculatus_F_contig12481:1116..11681696845631.877303-UTR-H-canaliculatus_F_contig12481:1116..1168Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 1117..1168 +
1622928963.388725-UTR-H-canaliculatus_F_contig12481:1546..15531622928963.388725-UTR-H-canaliculatus_F_contig12481:1546..1553Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 1547..1553 +
1696845631.8973596-UTR-H-canaliculatus_F_contig12481:1546..15531696845631.8973596-UTR-H-canaliculatus_F_contig12481:1546..1553Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12481 1547..1553 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.3755426-CDS-H-canaliculatus_F_contig12481:1168..15461622928963.3755426-CDS-H-canaliculatus_F_contig12481:1168..1546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12481 1169..1546 +
1696845631.8888078-CDS-H-canaliculatus_F_contig12481:1168..15461696845631.8888078-CDS-H-canaliculatus_F_contig12481:1168..1546Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12481 1169..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12481.2099.1

>prot_H-canaliculatus_F_contig12481.2099.1 ID=prot_H-canaliculatus_F_contig12481.2099.1|Name=mRNA_H-canaliculatus_F_contig12481.2099.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=126bp
MNRHFMPSSPRAHTALSFPASQLSMFVFLSQPTHWILIVWNSTETSRYLS
HDVPQEVFLRCCYVFLQKEDPTRNTTVRQKRKSVSCGANIPRLTKKQVSI
ATAAVPELPPTQRPTFKAYRLVPFL*
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mRNA from alignment at H-canaliculatus_F_contig12481:806..1553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12481.2099.1 ID=mRNA_H-canaliculatus_F_contig12481.2099.1|Name=mRNA_H-canaliculatus_F_contig12481.2099.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=748bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12481:806..1553+ (Hapterophycus canaliculatus Oshoro5f female)
GAGGCGGGCGGTTGGTGCGTCGTTCGTACAGCACCGCATGGCGTCGCGCA
AGTGCCCGCTTGAGTTGCGGTGGGTGTATTAGTAGCGGCAGCCGCGGCCA
CAATCGGACACGAAGATGACGGGGAGAGTCTGGACAGCAGCGGCTTTTGG
CTGGACACGAAACACATCGATGGTTCATGAGAGTGTTTCCCCAACACGGC
TCGCTTGCCTGCGTCAAGGCAATGTCTCATCACAGGGAGTATCCTTCAAG
AGTCTAGATGAACGCATGGCCCAGGTAATGGCTATATGATGTGTCACATG
AAATCACTGCAAGTTAAAGGAACAGTGCTGAGAGCGACCCTATACCATGG
TGTAGCATAATCCATGAATCGGCATTTCATGCCCAGTTCACCACGCGCAC
ACACCGCGCTGAGCTTCCCAGCTTCCCAGCTTTCCATGTTCGTGTTTTTG
TCCCAACCTACACATTGGATCCTCATTGTTTGGAATTCAACAGAAACCTC
CAGGTACCTATCGCACGACGTACCTCAGGAGGTGTTCCTGCGGTGCTGCT
ATGTCTTTCTCCAAAAAGAAGATCCAACGAGAAACACAACAGTGCGCCAA
AAAAGAAAAAGCGTGTCGTGCGGCGCGAATATCCCCCGCCTCACCAAAAA
GCAGGTTTCTATCGCGACAGCAGCAGTACCTGAACTTCCACCTACACAAC
GGCCCACCTTCAAAGCGTATCGTCTGGTCCCTTTCCTTTAGGACCAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12481:806..1553+

>mRNA_H-canaliculatus_F_contig12481.2099.1 ID=mRNA_H-canaliculatus_F_contig12481.2099.1|Name=mRNA_H-canaliculatus_F_contig12481.2099.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12481:806..1553+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAATCGGCATTTCATGCCCAGTTCACCACGCGCACACACCGCGCTGAG
CTTCCCAGCTTCCCAGCTTTCCATGTTCGTGTTTTTGTCCCAACCTACAC
ATTGGATCCTCATTGTTTGGAATTCAACAGAAACCTCCAGGTACCTATCG
CACGACGTACCTCAGGAGGTGTTCCTGCGGTGCTGCTATGTCTTTCTCCA
AAAAGAAGATCCAACGAGAAACACAACAGTGCGCCAAAAAAGAAAAAGCG
TGTCGTGCGGCGCGAATATCCCCCGCCTCACCAAAAAGCAGGTTTCTATC
GCGACAGCAGCAGTACCTGAACTTCCACCTACACAACGGCCCACCTTCAA
AGCGTATCGTCTGGTCCCTTTCCTTTAGATGAATCGGCATTTCATGCCCA
GTTCACCACGCGCACACACCGCGCTGAGCTTCCCAGCTTCCCAGCTTTCC
ATGTTCGTGTTTTTGTCCCAACCTACACATTGGATCCTCATTGTTTGGAA
TTCAACAGAAACCTCCAGGTACCTATCGCACGACGTACCTCAGGAGGTGT
TCCTGCGGTGCTGCTATGTCTTTCTCCAAAAAGAAGATCCAACGAGAAAC
ACAACAGTGCGCCAAAAAAGAAAAAGCGTGTCGTGCGGCGCGAATATCCC
CCGCCTCACCAAAAAGCAGGTTTCTATCGCGACAGCAGCAGTACCTGAAC
TTCCACCTACACAACGGCCCACCTTCAAAGCGTATCGTCTGGTCCCTTTC
CTTTAG
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