mRNA_H-canaliculatus_F_contig12457.2085.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12457.2085.1
Unique NamemRNA_H-canaliculatus_F_contig12457.2085.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12457.2085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12457contigH-canaliculatus_F_contig12457:889..2233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size976
Cds size654
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12457.2085.1prot_H-canaliculatus_F_contig12457.2085.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12457 889..1542 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.4002-CDS-H-canaliculatus_F_contig12457:888..15421622928961.4002-CDS-H-canaliculatus_F_contig12457:888..1542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 889..1542 -
1696845630.966781-CDS-H-canaliculatus_F_contig12457:888..15421696845630.966781-CDS-H-canaliculatus_F_contig12457:888..1542Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12457 889..1542 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.4203324-UTR-H-canaliculatus_F_contig12457:1542..18141622928961.4203324-UTR-H-canaliculatus_F_contig12457:1542..1814Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 1543..1814 -
1696845630.9767718-UTR-H-canaliculatus_F_contig12457:1542..18141696845630.9767718-UTR-H-canaliculatus_F_contig12457:1542..1814Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 1543..1814 -
1622928961.436041-UTR-H-canaliculatus_F_contig12457:2184..22331622928961.436041-UTR-H-canaliculatus_F_contig12457:2184..2233Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 2185..2233 -
1696845630.9865553-UTR-H-canaliculatus_F_contig12457:2184..22331696845630.9865553-UTR-H-canaliculatus_F_contig12457:2184..2233Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12457 2185..2233 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12457.2085.1

>prot_H-canaliculatus_F_contig12457.2085.1 ID=prot_H-canaliculatus_F_contig12457.2085.1|Name=mRNA_H-canaliculatus_F_contig12457.2085.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=218bp
MPSSTTARSVAPASIAAGAAAGGGAGVGASGAAEEAGGDTLGVFAAVAEV
AVAAAAVGFPSDDGVAFSQTGWNCCCCCCCSWCGCCCCCCWYCCCCCCCC
GCMSSDPAPGDISGGISAPLRDVRLRFAAGIRAPPPSPPGPSSPLLLLTT
PSTAGDTPESPSGTPLSPAESSPAAAAAAASVATAGKDAAGFSSQSPPTP
IPAPAPAPLCGAPTTWPW
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mRNA from alignment at H-canaliculatus_F_contig12457:889..2233-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12457.2085.1 ID=mRNA_H-canaliculatus_F_contig12457.2085.1|Name=mRNA_H-canaliculatus_F_contig12457.2085.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1345bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12457:889..2233- (Hapterophycus canaliculatus Oshoro5f female)
GGGAGAAGCTGGAGCAGCAGACGCGGCCGCACCGGCAACGGCGGCGGCGG
CGGCCGCCTCTCCGTGGTCCGCCGCTGGCGACGGTTTCTCGGCCTGTGCC
GCCGCCGCGCTGTCGGCTTCTCCTACGCCGCCGCCGCCGCCGCCGCCTGT
ACCGCCGCCTGATCCCGCCTTCTCGCCGGACGGGACGGGCTTGCTGAGAG
CCGCGATCGCCGCGACGGTTGCGGCGACGGCCTCGTCAAGGCTTTGCTCG
GTGGCAGGGCCGGCCGGAGCGGGTTCTGCCTTGGCTTTCTCGGACGGAGG
CGACGGGGTACCATCGCCGCCGCCTTCCGCCGCTGGCGTCGCCCCGGCGA
CGACATCTACAACGCCGCCACCGCTGCCGCGGCCACCGCCGCCGCCGCCG
ACGCTAGCGGCAGCGGCAGTGACAGGTGCTGGAGGGCTGGATGTCGCCGC
TGCCTGCGACGGAACCGTCTCCGCCTCCGCCGCCGCCGCCGCTGCTGCAT
CTTCGCCCTGAGCTACAGGGGAGAGGGACGAAGGAGGGGTCGTCGCCGCA
GCTTCCGAGCCGTTGCTCGGCGCCACAGGACCTTGCGGGTCCGGGCGCGC
TGCCGCAGGTGCACCCGCGACGATATCGCCACTGGCCGCGCGATCCGTGG
CAGCAGCGGCAGCGGCAGCAGGAGCTGCCGACTCACCCGCGATGCCATCG
TCAACGACCGCGCGGTCCGTGGCACCAGCATCGATAGCAGCAGGAGCAGC
TGCAGGAGGAGGAGCAGGGGTCGGCGCTTCGGGGGCAGCAGAGGAAGCGG
GAGGAGACACGCTCGGTGTCTTCGCAGCAGTCGCCGAGGTTGCTGTTGCT
GCCGCCGCCGTCGGGTTTCCAAGTGACGATGGGGTGGCGTTCTCCCAGAC
AGGCTGGAACTGCTGCTGCTGCTGCTGTTGCTCTTGGTGTGGTTGCTGCT
GCTGCTGTTGCTGGTATTGCTGCTGCTGCTGCTGCTGCTGCGGGTGTATG
AGTTCGGATCCGGCACCTGGAGACATCTCCGGAGGCATCTCGGCCCCGTT
GAGGGACGTGCGACTTCGTTTCGCCGCGGGCATCAGGGCTCCACCCCCCT
CCCCGCCAGGGCCCAGCTCGCCGCTCCTCTTGCTCACCACACCCTCCACC
GCCGGAGACACCCCCGAAAGCCCCTCGGGGACACCGCTTTCTCCCGCCGA
GTCCAGCCCAGCCGCGGCGGCGGCAGCGGCCAGCGTCGCGACCGCGGGGA
AGGACGCCGCCGGCTTTTCCAGCCAGTCGCCCCCGACGCCGATACCGGCA
CCGGCACCGGCTCCGCTCTGCGGTGCCCCCACGACGTGGCCGTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12457:889..2233-

>mRNA_H-canaliculatus_F_contig12457.2085.1 ID=mRNA_H-canaliculatus_F_contig12457.2085.1|Name=mRNA_H-canaliculatus_F_contig12457.2085.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1308bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12457:889..2233- (Hapterophycus canaliculatus Oshoro5f female)
ATGCCATCGTCAACGACCGCGCGGTCCGTGGCACCAGCATCGATAGCAGC
AGGAGCAGCTGCAGGAGGAGGAGCAGGGGTCGGCGCTTCGGGGGCAGCAG
AGGAAGCGGGAGGAGACACGCTCGGTGTCTTCGCAGCAGTCGCCGAGGTT
GCTGTTGCTGCCGCCGCCGTCGGGTTTCCAAGTGACGATGGGGTGGCGTT
CTCCCAGACAGGCTGGAACTGCTGCTGCTGCTGCTGTTGCTCTTGGTGTG
GTTGCTGCTGCTGCTGTTGCTGGTATTGCTGCTGCTGCTGCTGCTGCTGC
GGGTGTATGAGTTCGGATCCGGCACCTGGAGACATCTCCGGAGGCATCTC
GGCCCCGTTGAGGGACGTGCGACTTCGTTTCGCCGCGGGCATCAGGGCTC
CACCCCCCTCCCCGCCAGGGCCCAGCTCGCCGCTCCTCTTGCTCACCACA
CCCTCCACCGCCGGAGACACCCCCGAAAGCCCCTCGGGGACACCGCTTTC
TCCCGCCGAGTCCAGCCCAGCCGCGGCGGCGGCAGCGGCCAGCGTCGCGA
CCGCGGGGAAGGACGCCGCCGGCTTTTCCAGCCAGTCGCCCCCGACGCCG
ATACCGGCACCGGCACCGGCTCCGCTCTGCGGTGCCCCCACGACGTGGCC
GTGGATGCCATCGTCAACGACCGCGCGGTCCGTGGCACCAGCATCGATAG
CAGCAGGAGCAGCTGCAGGAGGAGGAGCAGGGGTCGGCGCTTCGGGGGCA
GCAGAGGAAGCGGGAGGAGACACGCTCGGTGTCTTCGCAGCAGTCGCCGA
GGTTGCTGTTGCTGCCGCCGCCGTCGGGTTTCCAAGTGACGATGGGGTGG
CGTTCTCCCAGACAGGCTGGAACTGCTGCTGCTGCTGCTGTTGCTCTTGG
TGTGGTTGCTGCTGCTGCTGTTGCTGGTATTGCTGCTGCTGCTGCTGCTG
CTGCGGGTGTATGAGTTCGGATCCGGCACCTGGAGACATCTCCGGAGGCA
TCTCGGCCCCGTTGAGGGACGTGCGACTTCGTTTCGCCGCGGGCATCAGG
GCTCCACCCCCCTCCCCGCCAGGGCCCAGCTCGCCGCTCCTCTTGCTCAC
CACACCCTCCACCGCCGGAGACACCCCCGAAAGCCCCTCGGGGACACCGC
TTTCTCCCGCCGAGTCCAGCCCAGCCGCGGCGGCGGCAGCGGCCAGCGTC
GCGACCGCGGGGAAGGACGCCGCCGGCTTTTCCAGCCAGTCGCCCCCGAC
GCCGATACCGGCACCGGCACCGGCTCCGCTCTGCGGTGCCCCCACGACGT
GGCCGTGG
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