mRNA_H-canaliculatus_F_contig12423.2058.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12423.2058.1
Unique NamemRNA_H-canaliculatus_F_contig12423.2058.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12423.2058.1 vs. uniprot
Match: A0A6H5KAR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAR2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 2.510e-15
Identity = 44/47 (93.62%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:  339 EDRPYARVRVVRANMGPKTIVKEMSEQLILDKLKKDVKAWIVTQPKT 479
            EDRPY RVRVVRANMGPKTIVKEMSEQLILDKLKKDVK WIV QPKT
Sbjct:  780 EDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWIVKQPKT 826
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BLAST of mRNA_H-canaliculatus_F_contig12423.2058.1 vs. uniprot
Match: D7FK21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK21_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 6.240e-15
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 3 
Query:  339 EDRPYARVRVVRANMGPKTIVKEMSEQLILDKLKKDVKAWIVTQPKT 479
            EDRPY RVRVVRANMGPKTIVKEMSEQLILDKLKKDVK WIV QP+T
Sbjct:  566 EDRPYPRVRVVRANMGPKTIVKEMSEQLILDKLKKDVKTWIVKQPQT 612
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12423.2058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAR2_9PHAE2.510e-1593.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK21_ECTSI6.240e-1591.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12423contigH-canaliculatus_F_contig12423:2163..3564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D7FK21
EggNOG OGs2E3JX@1,2SAMM@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-18_002750.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1390
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12423.2058.1prot_H-canaliculatus_F_contig12423.2058.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12423 2459..2644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.853943-UTR-H-canaliculatus_F_contig12423:2162..24581622928957.853943-UTR-H-canaliculatus_F_contig12423:2162..2458Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 2163..2458 +
1696845629.6703916-UTR-H-canaliculatus_F_contig12423:2162..24581696845629.6703916-UTR-H-canaliculatus_F_contig12423:2162..2458Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 2163..2458 +
1622928957.8761477-UTR-H-canaliculatus_F_contig12423:2644..31411622928957.8761477-UTR-H-canaliculatus_F_contig12423:2644..3141Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 2645..3141 +
1696845629.6943834-UTR-H-canaliculatus_F_contig12423:2644..31411696845629.6943834-UTR-H-canaliculatus_F_contig12423:2644..3141Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 2645..3141 +
1622928957.8872256-UTR-H-canaliculatus_F_contig12423:3153..35641622928957.8872256-UTR-H-canaliculatus_F_contig12423:3153..3564Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 3154..3564 +
1696845629.7028928-UTR-H-canaliculatus_F_contig12423:3153..35641696845629.7028928-UTR-H-canaliculatus_F_contig12423:3153..3564Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12423 3154..3564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.8653233-CDS-H-canaliculatus_F_contig12423:2458..26441622928957.8653233-CDS-H-canaliculatus_F_contig12423:2458..2644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12423 2459..2644 +
1696845629.6824305-CDS-H-canaliculatus_F_contig12423:2458..26441696845629.6824305-CDS-H-canaliculatus_F_contig12423:2458..2644Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12423 2459..2644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12423.2058.1

>prot_H-canaliculatus_F_contig12423.2058.1 ID=prot_H-canaliculatus_F_contig12423.2058.1|Name=mRNA_H-canaliculatus_F_contig12423.2058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
MSSFLLTPHYVEPQEDRPYARVRVVRANMGPKTIVKEMSEQLILDKLKKD
VKAWIVTQPKT*
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mRNA from alignment at H-canaliculatus_F_contig12423:2163..3564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12423.2058.1 ID=mRNA_H-canaliculatus_F_contig12423.2058.1|Name=mRNA_H-canaliculatus_F_contig12423.2058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1402bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12423:2163..3564+ (Hapterophycus canaliculatus Oshoro5f female)
AAACAGAGGGGGCAACGCTGAAGAAAAACCCCGGAAGAACAACCCTTTGG
GGAGGTCTCCCCCGCTTTTTTTTTTTTTACCCGGGTTTGGCTTTTGCTCT
CTCCGAGCCGATGACCACCAGCGCAGGCTCCGGGTTTCGATGCCGTCCTC
GTTCCTGCTGCATGTGCTTGCGTGCGCCATAAATGCCGGCGACCTTGCGA
ACAGGCAGTCACCTCGCTTGTTGCTGTTTGTGGAATTTGTGTTGGTGTTG
GAAATACTGCTGCTGTTGCCGCTGCTGGCGCTGGTGTTGACTTTTGATGT
CCTCCTTTCTCTTGACGCCTCATTACGTGGAACCCCAGGAGGATAGGCCG
TACGCGAGAGTCAGGGTTGTCCGCGCAAACATGGGGCCGAAGACGATCGT
CAAGGAGATGTCGGAGCAGCTCATACTCGACAAGCTCAAGAAAGACGTCA
AGGCCTGGATCGTAACGCAGCCGAAAACGTAAGGAGCGCCGCACGATGAA
CACCGCCGCCACTACTACCGTTACTGCCATCTGCAGCAACACCAGCAGCA
GCATCACCAGCAGCGCTAGCAGCATCAACACCACAAACGCTGGACAGTCA
GGCTTCTTCTCTTGCTTTGGGTAGCTTGAGCGTCGGAACGACAGCAGATG
ACTCTCCTCGCCTTGATGGGAAGCCATGGACGAGAAAGATGCGTCGCCCT
CAACGCTTGGGTCACGAAGCAGTCGAAGCACATAGAACGGTGCTGTTTCG
GAGGGAAGATTAAAGCCAGCTGCTCGCCCTGTTCGGTGGTGATTGGTCAC
CGCGGTGGGAGAACATGGAAGCGAACATGGAAGCGTGCGAACAGTAGAGG
CAGCACAGTAGGGCTGATTTATTTTTACCTGGCGGTGCGTCGCCGAGAGT
TGAGGGAGAGAGGGAAGAGAGCATGCACGTGTTGAGAGAGAGAGACAGAG
AGAGACAGACACAAGAGACAGACAGACAGGCAGGCAGAGAGACAGAGGAG
GGAAACAGAGGCCGGGATACATGATTTTTTTGTCTTCAATCATCCTTGTC
GTCGTGTGTCTCGTTTGACTAGGTAAGGCCCGAGGTGAGGCCAGCGCGAA
AGCAAAGATGAGCCCCTTCTTGATTGTTCCGGCGAAGCTTCCCGCAGAGC
CCGCAGGCGTGCGTTTTGTTCTTGAGGGTGGTGTCAGTGTTTTTGTTGTT
CAATCTCGACGGTCGATCTGTACATGTGAGTGCCCTTTTTCGTTTGCGAC
CCCGTGCTCGCCATGTTGCCCATGATGTTGACTGGGCACGGTACGGCAGT
GGGCGGTGTGACGGAGCTAAAGTCAGTTTGCACCGCACGGAGTCTTCGTG
AGTCCCCTTCCCCTGCAAAATTGTGCACGGAAAAGTGCGCTCGGGGGAGG
GG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12423:2163..3564+

>mRNA_H-canaliculatus_F_contig12423.2058.1 ID=mRNA_H-canaliculatus_F_contig12423.2058.1|Name=mRNA_H-canaliculatus_F_contig12423.2058.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12423:2163..3564+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCTCCTTTCTCTTGACGCCTCATTACGTGGAACCCCAGGAGGATAG
GCCGTACGCGAGAGTCAGGGTTGTCCGCGCAAACATGGGGCCGAAGACGA
TCGTCAAGGAGATGTCGGAGCAGCTCATACTCGACAAGCTCAAGAAAGAC
GTCAAGGCCTGGATCGTAACGCAGCCGAAAACGTAAATGTCCTCCTTTCT
CTTGACGCCTCATTACGTGGAACCCCAGGAGGATAGGCCGTACGCGAGAG
TCAGGGTTGTCCGCGCAAACATGGGGCCGAAGACGATCGTCAAGGAGATG
TCGGAGCAGCTCATACTCGACAAGCTCAAGAAAGACGTCAAGGCCTGGAT
CGTAACGCAGCCGAAAACGTAA
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