mRNA_H-canaliculatus_F_contig12350.2005.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12350.2005.1
Unique NamemRNA_H-canaliculatus_F_contig12350.2005.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: D8LN86_ECTSI (Similar to DNA (Cytosine-5-)-methyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN86_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 2.230e-61
Identity = 93/104 (89.42%), Postives = 95/104 (91.35%), Query Frame = 1 
Query:   34 LPTYNTTGTQPPRFGKHDKALLATRGAKQPKGKHPGYIITLYGKKVRRCGVCLPCLSTDCGQCRYCEDMPKHGGRGSYKQPCEARKCDWVEFDRKAKLVISQLS 345
            LPTY+TTGTQPPRFGK DKALLAT GAKQPKGKHPGYIITLYGKKVRRCG C PC S DCGQCRYC DMPKHGGRGSYKQPCEARKC WVEFDRKAK VI+QLS
Sbjct:  440 LPTYSTTGTQPPRFGKQDKALLATHGAKQPKGKHPGYIITLYGKKVRRCGECAPCRSADCGQCRYCVDMPKHGGRGSYKQPCEARKCAWVEFDRKAKTVITQLS 543
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A6H5JMT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT6_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.120e-22
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   34 LPTYNTTGTQPPRFGKHDKALLATRGAKQPKGKHPGYIITLYGKKVR 174
            LPTY+TTGTQPPRFGK DKALLAT GAKQPKGKHPGYIITLYGKKVR
Sbjct:  207 LPTYSTTGTQPPRFGKQDKALLATHGAKQPKGKHPGYIITLYGKKVR 253
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A8K0DB43_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DB43_9COLE)

HSP 1 Score: 66.6 bits (161), Expect = 1.970e-10
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  160 GKKVRRCGVCLPCLSTDCGQCRYCEDMPKHGGRGSYKQPCEARKCDWVEF 309
            G + +RCGVC PC + DCG+C +C DM K GG G  KQ C+ R+C ++E 
Sbjct:  329 GPRRKRCGVCEPCQTPDCGKCNHCRDMLKFGGTGRSKQACQMRRCPYMEI 378
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A553P9S0_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P9S0_TIGCA)

HSP 1 Score: 61.2 bits (147), Expect = 1.520e-8
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1 
Query:   88 KALLATRGAKQPKGKHPGYIITLYGKKVR-RCGVCLPCLSTDCGQCRYCEDMPKHGGRGSYKQPCEARKC 294
            K +  +  +++ K K    I    GKK R  C +C  C+S DCG C YC DMP+ GG G  + PC+ R+C
Sbjct:  475 KPVAKSSNSRKEKTKDVFIIKKEKGKKDRVPCKICQACISPDCGMCSYCSDMPRFGGPGRMRHPCQMRQC 544
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A7S2WD19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WD19_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.640e-8
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:  163 KKVRRCGVCLPCLSTDCGQCRYCEDMPKHGGRGSYKQPCEARKCDWVE 306
            ++  RCG C  C + +CG CR+C DMP  GG G+ KQ CE R+C  V+
Sbjct:   78 RRSNRCGECAGCRAQNCGDCRFCLDMPIFGGPGNLKQGCERRQCMAVQ 125
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: K0RWQ5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RWQ5_THAOC)

HSP 1 Score: 56.2 bits (134), Expect = 8.830e-7
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:  163 KKVRRCGVCLPCLST-DCGQCRYCEDMPKHGGRGSYKQPCEARKCDWVEFDRKA 321
            K++ +CG C  C  T DCGQC++C D PK GG+   +Q C  RKC ++ + + A
Sbjct:  741 KRMFKCGDCTACKITFDCGQCQFCLDKPKFGGKNRLRQTCIKRKCPFMRYAKPA 794
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A5N5TF23_9CRUS (CXXC-type zinc finger protein 1 n=1 Tax=Armadillidium nasatum TaxID=96803 RepID=A0A5N5TF23_9CRUS)

HSP 1 Score: 56.2 bits (134), Expect = 8.890e-7
Identity = 33/76 (43.42%), Postives = 39/76 (51.32%), Query Frame = 1 
Query:   79 KHDKALLATRGAKQPKGKHPGYIITLYGKKVRR---CGVCLPCLSTD-CGQCRYCEDMPKHGGRGSYKQPCEARKC 294
            KH K  L+ + AK    K       +   KVR    CG C  CL+T  CG C YCEDMPK GG G Y+Q C  + C
Sbjct: 1362 KHHKLKLSKKAAK----KLNQSFCRVSPSKVRTKYYCGECPGCLTTTPCGNCLYCEDMPKFGGPGRYRQKCVKQLC 1433
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: UPI001FB83D82 (uncharacterized protein LOC125027167 isoform X1 n=11 Tax=Penaeus TaxID=133894 RepID=UPI001FB83D82)

HSP 1 Score: 53.9 bits (128), Expect = 5.670e-6
Identity = 23/40 (57.50%), Postives = 26/40 (65.00%), Query Frame = 1 
Query:  178 CGVCLPCLSTD-CGQCRYCEDMPKHGGRGSYKQPCEARKC 294
            CG C  CL+T  CG C YCEDMPK GG G Y+Q C  + C
Sbjct: 1129 CGECPGCLTTTPCGNCLYCEDMPKFGGPGRYRQKCVKQLC 1168
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: UPI0015D0BA8D (methyl-CpG-binding domain protein 1a isoform X1 n=3 Tax=Electrophorus electricus TaxID=8005 RepID=UPI0015D0BA8D)

HSP 1 Score: 52.0 bits (123), Expect = 2.600e-5
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:  172 RRCGVCLPCLS-TDCGQCRYCEDMPKHGGRGSYKQPCEARKCDW 300
            R CG C  CL   DCG+C +C D PK GGR   +Q C  R+C +
Sbjct:  451 RMCGQCKACLQDNDCGECDFCMDKPKFGGRNKKRQKCRMRQCQF 494
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BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Match: A0A8J5JIW5_HOMAM (Methyl-CpG-binding domain protein 1-like n=3 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5JIW5_HOMAM)

HSP 1 Score: 52.0 bits (123), Expect = 2.680e-5
Identity = 22/40 (55.00%), Postives = 25/40 (62.50%), Query Frame = 1 
Query:  178 CGVCLPC-LSTDCGQCRYCEDMPKHGGRGSYKQPCEARKC 294
            CG C  C  +T CG C YCEDMPK GG G Y+Q C  + C
Sbjct: 1069 CGECPGCQTTTPCGNCLYCEDMPKFGGPGRYRQKCVKQLC 1108
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12350.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LN86_ECTSI2.230e-6189.42Similar to DNA (Cytosine-5-)-methyltransferase (Pa... [more]
A0A6H5JMT6_9PHAE4.120e-2293.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K0DB43_9COLE1.970e-1050.00Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A553P9S0_TIGCA1.520e-840.00Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
A0A7S2WD19_9STRA4.640e-847.92Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
K0RWQ5_THAOC8.830e-742.59Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A5N5TF23_9CRUS8.890e-743.42CXXC-type zinc finger protein 1 n=1 Tax=Armadillid... [more]
UPI001FB83D825.670e-657.50uncharacterized protein LOC125027167 isoform X1 n=... [more]
UPI0015D0BA8D2.600e-547.73methyl-CpG-binding domain protein 1a isoform X1 n=... [more]
A0A8J5JIW5_HOMAM2.680e-555.00Methyl-CpG-binding domain protein 1-like n=3 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12350contigH-canaliculatus_F_contig12350:939..3284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.9e-51
Seed eggNOG ortholog2880.D8LN86
EggNOG OGs2D052@1,2SCUE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size347
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12350.2005.1prot_H-canaliculatus_F_contig12350.2005.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12350 939..3284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.874646-CDS-H-canaliculatus_F_contig12350:938..9691622928950.874646-CDS-H-canaliculatus_F_contig12350:938..969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 939..969 -
1696845626.3840322-CDS-H-canaliculatus_F_contig12350:938..9691696845626.3840322-CDS-H-canaliculatus_F_contig12350:938..969Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 939..969 -
1622928950.9002266-CDS-H-canaliculatus_F_contig12350:2519..26651622928950.9002266-CDS-H-canaliculatus_F_contig12350:2519..2665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 2520..2665 -
1696845626.3962414-CDS-H-canaliculatus_F_contig12350:2519..26651696845626.3962414-CDS-H-canaliculatus_F_contig12350:2519..2665Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 2520..2665 -
1622928950.913622-CDS-H-canaliculatus_F_contig12350:3116..32841622928950.913622-CDS-H-canaliculatus_F_contig12350:3116..3284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 3117..3284 -
1696845626.4055405-CDS-H-canaliculatus_F_contig12350:3116..32841696845626.4055405-CDS-H-canaliculatus_F_contig12350:3116..3284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12350 3117..3284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12350.2005.1

>prot_H-canaliculatus_F_contig12350.2005.1 ID=prot_H-canaliculatus_F_contig12350.2005.1|Name=mRNA_H-canaliculatus_F_contig12350.2005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=115bp
GSGGGSASSVSLPTYNTTGTQPPRFGKHDKALLATRGAKQPKGKHPGYII
TLYGKKVRRCGVCLPCLSTDCGQCRYCEDMPKHGGRGSYKQPCEARKCDW
VEFDRKAKLVISQLS
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mRNA from alignment at H-canaliculatus_F_contig12350:939..3284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12350.2005.1 ID=mRNA_H-canaliculatus_F_contig12350.2005.1|Name=mRNA_H-canaliculatus_F_contig12350.2005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2346bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12350:939..3284- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCGGCGGTGGGAGCGCCTCGTCCGTTTCCCTTCCGACGTACAACAC
CACCGGGACGCAGCCGCCGCGCTTCGGGAAGCACGACAAGGCTCTGCTGG
CCACCCGCGGCGCCAAGCAGCCCAAGGGGAAGCACCCCGGCTACATCATC
ACGCTCTACGGCAAGAAGGTGGGCTCGGCGGTGGCGGCGGCGGTGATCGC
GATAAAGGTTGTTAGGTGTGGGTTACGGCTGCTGCCGCTGCTGCCGCTGC
TTCTGCCGCCGCCGCCGCTGCTGCTGCCGCTTCTTTTTCCTCCTGCCCGT
CCTCGCCTTGTTTTTCTTCCCGTCCGTCCTTTTCTTCGCTTGTCTTCGCT
TGTGTTGCTGTCGGCTGACGCGCTACCCTCCTTTCCCGCAAGGACCAACG
CAGCAGCAGTCAGAAACGCCTCCGTTCCGCGCTCTTGCCCTCAAGACACC
GAAGAGAGAAATAGCCACGCAAACGCATGATCATGGCGGGGCCTCGTCCT
CACCTCTCCCTCCTCCCGTCTCTCAACCCCCTCCGCCGCCCCCCCGCGGG
CGGACGGGCCTACCCGCGACAACCGCCCCTTCCTCCCGTTGAAACCCAAT
GGTGAAACGGAACTTGCAGGTGAGGCGCTGCGGTGTGTGCCTCCCCTGTC
TCTCGACGGACTGCGGCCAGTGCCGGTACTGCGAAGACATGCCGAAGCAC
GGCGGCAGGGGGTCCTACAAACAGCCCTGCGAGGCGCGCAAGTGCGACTG
GGTCGAGTTCGACCGGTGAGTCACGGAGCCCCCCCCAAAAATGCCGTCGG
CGTACTCGGCCTAGTCGGCCTAGTCGAGGCCATCTCGTCAACGTGCAAGC
CGAGTCATGGGTTGGCGGATTGGGGAGTGCGGTGTCGTGTGTGGATCTAT
CGCTCCTGTGGCTGCTGAGATTTGTAAAGAAAACATAACAACACCGTTAG
AACAATTCCTGAGGTACGTCGTGTGAGGCGTTCCCCGGGGCTTCTATTGA
GTTCAAAATAGTAAGGGTTCATTGATGGGGACAAAAGCATGAACAGTACA
GAGTGTGTGTGTAACCTACCGCAATTAATTGTATGGAATATATCAAGATA
CGCAATACTTCGAAAATGAACGTGTTATGATGGATTATGAACAACTATGG
GAAGCGACACAATATATGATAGCGTACTTGTGTAGGTTATCGAAAAATAC
TCCCTGCGATGCGACGCGAAGAAACGAAGTAAGTGAAGAGTTCACTGCTA
CCTCAAACTGCTCGTCACGAGAGCATGTCAGTGGCGGAGCAGAAGGAAGC
AGATAGTGTCCCGGACGAGAAAGGGCATGTAGGTGACTGTCCTCATCATC
AGCAGCAGCAGTGGTTGTACAAGTTGTACTGTCGACGAAAACACCTCAAA
TCGGTATACACCTCTATGCACCCAAGCGTGGCTGGAAGGAGAGATCTTGG
GACAAGAGCAGAAGTAGCGAGAGATAGGATGCACATTTCTCTAACGCGTT
TCCACATGGCCTCAAATACCTAGCGGAGAGAGCTACGTACGGCACCACGG
CGGGATCCAAATGCCGGCTACTCCGAAAGTGAATGGGAGGGGGGAGTGGG
GAGCGAACACGAAATGGCAAACTATCCCTCATGCTGCTCTCATCTGACGT
AGATATGAAAAATGTTTTGGAGGCCACTACAAGTATGTATCAGGAAGCCA
CAAGAAGATGGGAAATGTGTGTTTGTGTGTCACCTGTTGTTGATGTGTGG
GCAGGGAAAGTGCGGAAAGTCGGGTGGTTAATATTCATGAATGTGGTGTC
GTCGTGGTATCTGCTTATTGCTAGTGTTATCGTTCTGGTTCCCTTCTTTT
TCATTTTTTATATGTTTTGAGATTTTTGTCGGGTGCGCTGGAGGGGTCGG
AAATAACGCAGCGCTTCGACTCGGCCATGGCTCGGAGGGTAGAGAGGCAG
CAAAGAGGTAGGGGGACGAGATAGACAGAAAGACAGACAGACAGACAGAC
AGACAGAGGGGAGTCTTGAAAATTCAGGAGACTGACGAAGAACCGCTGTT
TGTTACCAGCAAGTTGAGCGCCGTCGCGGTGTTGCTCGAGGCACGTGGGT
GTTCAAGGCTAACGAGGCGTTCCGTCGCAGCTGCTGGCCTGCTTCGGGCA
GTCTTGACTCCCATGCGGAGAAGAACACCCACCCCCGGCGACACAGGAGC
AGGACGCCACCCCGGGCAAATGGGAAGAGGGCAAACCGGAAGATAACACC
CCCCCCCCTTCCCCCCCTTCCCCCCCTTCCCCACCTTTCCTCCTCCACCG
TCCTTTGACTTCCAGAAAAGCGAAGCTGGTGATCTCACAGCTGTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12350:939..3284-

>mRNA_H-canaliculatus_F_contig12350.2005.1 ID=mRNA_H-canaliculatus_F_contig12350.2005.1|Name=mRNA_H-canaliculatus_F_contig12350.2005.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=690bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12350:939..3284- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGCGGCGGTGGGAGCGCCTCGTCCGTTTCCCTTCCGACGTACAACAC
CACCGGGACGCAGCCGCCGCGCTTCGGGAAGCACGACAAGGCTCTGCTGG
CCACCCGCGGCGCCAAGCAGCCCAAGGGGAAGCACCCCGGCTACATCATC
ACGCTCTACGGCAAGAAGGGCAGCGGCGGTGGGAGCGCCTCGTCCGTTTC
CCTTCCGACGTACAACACCACCGGGACGCAGCCGCCGCGCTTCGGGAAGC
ACGACAAGGCTCTGCTGGCCACCCGCGGCGCCAAGCAGCCCAAGGGGAAG
CACCCCGGCTACATCATCACGCTCTACGGCAAGAAGGTGAGGCGCTGCGG
TGTGTGCCTCCCCTGTCTCTCGACGGACTGCGGCCAGTGCCGGTACTGCG
AAGACATGCCGAAGCACGGCGGCAGGGGGTCCTACAAACAGCCCTGCGAG
GCGCGCAAGTGCGACTGGGTCGAGTTCGACCGGTGAGGCGCTGCGGTGTG
TGCCTCCCCTGTCTCTCGACGGACTGCGGCCAGTGCCGGTACTGCGAAGA
CATGCCGAAGCACGGCGGCAGGGGGTCCTACAAACAGCCCTGCGAGGCGC
GCAAGTGCGACTGGGTCGAGTTCGACCGAAAAGCGAAGCTGGTGATCTCA
CAGCTGTCTAAAAGCGAAGCTGGTGATCTCACAGCTGTCT
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