mRNA_H-canaliculatus_F_contig12339.1993.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12339.1993.1
Unique NamemRNA_H-canaliculatus_F_contig12339.1993.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12339.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12339contigH-canaliculatus_F_contig12339:1614..2305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size693
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.512214-CDS-H-canaliculatus_F_contig12339:1613..19701622928949.512214-CDS-H-canaliculatus_F_contig12339:1613..1970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12339 1614..1970 +
1696845625.7528229-CDS-H-canaliculatus_F_contig12339:1613..19701696845625.7528229-CDS-H-canaliculatus_F_contig12339:1613..1970Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12339 1614..1970 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.5248487-UTR-H-canaliculatus_F_contig12339:1970..23051622928949.5248487-UTR-H-canaliculatus_F_contig12339:1970..2305Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12339 1971..2305 +
1696845625.7615936-UTR-H-canaliculatus_F_contig12339:1970..23051696845625.7615936-UTR-H-canaliculatus_F_contig12339:1970..2305Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12339 1971..2305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12339.1993.1prot_H-canaliculatus_F_contig12339.1993.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12339 1614..1970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12339.1993.1

>prot_H-canaliculatus_F_contig12339.1993.1 ID=prot_H-canaliculatus_F_contig12339.1993.1|Name=mRNA_H-canaliculatus_F_contig12339.1993.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=119bp
EKGGRVTREKIPSVLGRRTVKQTPHTLCFSHFKESTSTTLEHLLRYVVRG
VARGFPSRAPNTEGSLAVSLLASVLPAVGVDFLSGGRGRRACPGCRIHPP
RGEGRGAVPIHDVLYGRV*
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mRNA from alignment at H-canaliculatus_F_contig12339:1614..2305+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12339.1993.1 ID=mRNA_H-canaliculatus_F_contig12339.1993.1|Name=mRNA_H-canaliculatus_F_contig12339.1993.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12339:1614..2305+ (Hapterophycus canaliculatus Oshoro5f female)
GAAAAGGGGGGGCGGGTAACGAGGGAGAAAATACCTTCTGTTCTCGGACG
CAGGACTGTCAAGCAGACGCCTCACACCTTGTGTTTTTCCCATTTCAAAG
AAAGCACGTCGACGACGTTGGAACACCTCCTGAGGTACGTCGTGCGAGGC
GTAGCTCGAGGCTTTCCGTCGAGAGCTCCGAACACTGAGGGTTCCCTCGC
CGTTTCTCTGCTGGCGTCTGTTTTGCCTGCTGTCGGCGTCGACTTTTTGT
CGGGGGGACGGGGGCGGCGTGCGTGCCCAGGCTGCCGCATCCACCCACCC
CGCGGTGAGGGGAGAGGAGCGGTGCCGATCCACGACGTGCTCTACGGACG
CGTTTGATGGGTGTATTTGTATCTGGCGACGGAGGAAAGAGGCGCTTTGT
GTCTGGCGACGGGGGAAAGAGGCGCCGGACGATTAGCGGGGCCCCTTCGC
CGAAGGCGCTCTCGCCGCCGCCGCGACCTGGCGAGCGAGGACGCACTTCT
TTCTGAAGGCGAAAGGGTTTCTCCCTTTCTCTTTGTCTTCACGCCATTTT
ACCCCCGGCGGTCTTACGTAGTACCAGGTATCTCTCAACGGATGATTATA
TAAAACAAGTCAACAACACCGAAGGAATACTCACCTGAGACACTGTCCAT
CTAGAGGGGCTTTTGTTCATTCCATTCAGCGGGAACGCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12339:1614..2305+

>mRNA_H-canaliculatus_F_contig12339.1993.1 ID=mRNA_H-canaliculatus_F_contig12339.1993.1|Name=mRNA_H-canaliculatus_F_contig12339.1993.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=714bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12339:1614..2305+ (Hapterophycus canaliculatus Oshoro5f female)
GAAAAGGGGGGGCGGGTAACGAGGGAGAAAATACCTTCTGTTCTCGGACG
CAGGACTGTCAAGCAGACGCCTCACACCTTGTGTTTTTCCCATTTCAAAG
AAAGCACGTCGACGACGTTGGAACACCTCCTGAGGTACGTCGTGCGAGGC
GTAGCTCGAGGCTTTCCGTCGAGAGCTCCGAACACTGAGGGTTCCCTCGC
CGTTTCTCTGCTGGCGTCTGTTTTGCCTGCTGTCGGCGTCGACTTTTTGT
CGGGGGGACGGGGGCGGCGTGCGTGCCCAGGCTGCCGCATCCACCCACCC
CGCGGTGAGGGGAGAGGAGCGGTGCCGATCCACGACGTGCTCTACGGACG
CGTTTGAGAAAAGGGGGGGCGGGTAACGAGGGAGAAAATACCTTCTGTTC
TCGGACGCAGGACTGTCAAGCAGACGCCTCACACCTTGTGTTTTTCCCAT
TTCAAAGAAAGCACGTCGACGACGTTGGAACACCTCCTGAGGTACGTCGT
GCGAGGCGTAGCTCGAGGCTTTCCGTCGAGAGCTCCGAACACTGAGGGTT
CCCTCGCCGTTTCTCTGCTGGCGTCTGTTTTGCCTGCTGTCGGCGTCGAC
TTTTTGTCGGGGGGACGGGGGCGGCGTGCGTGCCCAGGCTGCCGCATCCA
CCCACCCCGCGGTGAGGGGAGAGGAGCGGTGCCGATCCACGACGTGCTCT
ACGGACGCGTTTGA
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