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Homology
BLAST of mRNA_H-canaliculatus_F_contig12296.1964.1 vs. uniprot
Match: D7G174_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G174_ECTSI) HSP 1 Score: 108 bits (269), Expect = 1.700e-22 Identity = 64/105 (60.95%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 1 FVEQGGEFDTAVSEIPVNMSVIRATIGPGESSAWAGKSLDFWQGLEPLSLKRERDRERLERSLGGRTKAAGAPSGXXXXXXXRPSPGGAGVRE--RQHRLYDVNG 309
FVEQGGE + V EIPVNM+VIRATIGPGESSAWAGKSLD W+GLEPL+++RE RERL LG T A R SPG AGV+ +HRLYD+NG
Sbjct: 579 FVEQGGEIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVEREGVRERL---LGSGTADAPLELEEEEGHLLR-SPGLAGVKNGRERHRLYDLNG 679
BLAST of mRNA_H-canaliculatus_F_contig12296.1964.1 vs. uniprot
Match: A0A6H5JIC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC2_9PHAE) HSP 1 Score: 104 bits (259), Expect = 3.490e-21 Identity = 62/105 (59.05%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 1 FVEQGGEFDTAVSEIPVNMSVIRATIGPGESSAWAGKSLDFWQGLEPLSLKRERDRERLERSLGGRTKAAGAPSGXXXXXXXRPSPGGAGVRE--RQHRLYDVNG 309
FVEQGG+ + V EIPVNM+VIRATIGPGESSAWAGKSLD W+GLEPL+++RE RERL LG T A R SPG AG + +HRLYD+NG
Sbjct: 612 FVEQGGDIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVEREGVRERL---LGSGTADAPLELEEEEGHLLR-SPGLAGGKNGRERHRLYDLNG 712
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 901 |
| Cds size | 900 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928945.0096784-CDS-H-canaliculatus_F_contig12296:1758..2006 | 1622928945.0096784-CDS-H-canaliculatus_F_contig12296:1758..2006 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 1759..2006 - |
| 1696845623.8417616-CDS-H-canaliculatus_F_contig12296:1758..2006 | 1696845623.8417616-CDS-H-canaliculatus_F_contig12296:1758..2006 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 1759..2006 - |
| 1622928945.0292344-CDS-H-canaliculatus_F_contig12296:2076..2599 | 1622928945.0292344-CDS-H-canaliculatus_F_contig12296:2076..2599 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 2077..2599 - |
| 1696845623.855227-CDS-H-canaliculatus_F_contig12296:2076..2599 | 1696845623.855227-CDS-H-canaliculatus_F_contig12296:2076..2599 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 2077..2599 - |
| 1622928945.0476673-CDS-H-canaliculatus_F_contig12296:3058..3187 | 1622928945.0476673-CDS-H-canaliculatus_F_contig12296:3058..3187 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 3059..3187 - |
| 1696845623.8668563-CDS-H-canaliculatus_F_contig12296:3058..3187 | 1696845623.8668563-CDS-H-canaliculatus_F_contig12296:3058..3187 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig12296 3059..3187 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig12296.1964.1 >prot_H-canaliculatus_F_contig12296.1964.1 ID=prot_H-canaliculatus_F_contig12296.1964.1|Name=mRNA_H-canaliculatus_F_contig12296.1964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=300bp
FVEQGGEFDTAVSEIPVNMSVIRATIGPGESSAWAGKSLDFWQGLEPLSL
KRERDRERLERSLGGRTKAAGAPSGAGSGSGVRPSPGGAGVRERQHRLYD
VNGGGTQKGKRGGGGGKVAVAGKDPSKKRPLSSGGGKGGEGEGGKKPKKR
SSPATVNASGGGGGGGTSSGSGGSGGSGGSGRSGSGRNDNGGGGGSSAAR
DGGSSASSSGSGNGSGGAAAAAAAAAAAAAVLAERMMVQGHRRQWPWQGR
PRRGSKSMSWWRSASGVWDRRSWVPQWHASKTRRSQKRLRRWPSLSPRRT back to topmRNA from alignment at H-canaliculatus_F_contig12296:1758..3187- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig12296.1964.1 ID=mRNA_H-canaliculatus_F_contig12296.1964.1|Name=mRNA_H-canaliculatus_F_contig12296.1964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1430bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12296:1758..3187- (Hapterophycus canaliculatus Oshoro5f female)
TTCGTTGAGCAAGGCGGAGAGTTCGACACCGCCGTCAGCGAAATCCCCGT
CAACATGAGCGTAATCAGGGCCACCATAGGCCCCGGGGAAAGCAGTGCGT
GGGCGGGCAAGTCGCTCGACTTCTGGCAGGTGCCCTGTCTGTGGTTACTG
TCGCGTTCGTTCTGTGTCGTGTTCTTGAAAACTGTTAGATGCGTCGTAGC
TCTCTTGTGTTCATGCTTGGTGTATTTTGTTGTCATGGTTGTGACGGCCT
GGCGTGCCTGGCGTACCTGGCGTACCTCGCCTGCGTTTCGGTGGGTTTTC
GGGGGGCGTCTGGGCGTGCGTGATTTGGATCGGCGGGTGCGGGAACTGCC
GTCGGATTGGGGTGGAGCACGCCGATGCATCCATGCCCAGCGTCCAGTCC
GGTCTGTCTGTATTCTGCCGCCACCAGCTGCGCCTGCCCATGGCTGCACA
TGTCAAGCGCGCGACCAGAGTTTGGTGTATACCTGGTAGGGAAAATGCAC
CACAATGACGTCATGGGACACCCCTTCCCCCCCCCCCCCCACCTCCCCTC
TCACCTCGGCGCTTTACTGCCATCCCCAACCGACCCAGGGTCTTGAACCG
CTCAGCCTAAAGCGCGAGCGCGATCGCGAGCGCTTGGAGCGGTCGCTGGG
CGGAAGGACGAAGGCGGCGGGGGCTCCGTCGGGGGCAGGATCAGGGTCCG
GGGTGAGACCCTCCCCTGGCGGCGCGGGCGTCCGAGAGCGGCAGCACAGG
CTGTACGACGTGAACGGGGGGGGCACGCAGAAGGGCAAGCGTGGAGGGGG
AGGCGGGAAGGTCGCCGTCGCGGGCAAAGACCCCTCCAAGAAGCGTCCGT
TGTCCTCGGGAGGAGGGAAAGGGGGCGAGGGAGAAGGGGGCAAGAAGCCG
AAGAAACGGAGTTCTCCCGCCACTGTGAATGCCAGCGGTGGCGGAGGCGG
CGGGGGCACTAGCAGCGGCAGCGGCGGCAGCGGTGGTAGCGGTGGTAGCG
GCAGAAGTGGTAGCGGCAGAAATGATAACGGCGGCGGCGGCGGTAGCAGC
GCCGCGAGGGACGGCGGGAGCAGTGCCAGTAGCAGCGGCAGCGGTAACGG
CAGCGGCGGCGGCGACAGTGGCAATGATCGCGTCAGCGGCAGCGGCGGCG
GCGGCGGCGGCAATGATCGCGTCAGTGGCAGCGGCAGCGGCAGCGGCAGC
GGCAGCGGCAGCGGCAGCGGTGTTGGCGGAGCGGATGATGGTGCAGGGTC
ATCGGCGGCAGTGGCCTTGGCAGGGGCGGCCGCGGCGGGGGTCGAAATCG
ATGAGCTGGTGGCGGAGCGCATCGGGCGTATGGGACCGGAGGAGCTGGGT
GCCGCAGTGGCACGCGTCAAAAACGCGAAGAAGTCAGAAAAGACTCCGCC
GCTGGCCAAGTCTCTCCCCAAGAAGGACAT back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig12296:1758..3187- >mRNA_H-canaliculatus_F_contig12296.1964.1 ID=mRNA_H-canaliculatus_F_contig12296.1964.1|Name=mRNA_H-canaliculatus_F_contig12296.1964.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1800bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12296:1758..3187- (Hapterophycus canaliculatus Oshoro5f female)
TTCGTTGAGCAAGGCGGAGAGTTCGACACCGCCGTCAGCGAAATCCCCGT
CAACATGAGCGTAATCAGGGCCACCATAGGCCCCGGGGAAAGCAGTGCGT
GGGCGGGCAAGTCGCTCGACTTCTGGCAGTTCGTTGAGCAAGGCGGAGAG
TTCGACACCGCCGTCAGCGAAATCCCCGTCAACATGAGCGTAATCAGGGC
CACCATAGGCCCCGGGGAAAGCAGTGCGTGGGCGGGCAAGTCGCTCGACT
TCTGGCAGGGTCTTGAACCGCTCAGCCTAAAGCGCGAGCGCGATCGCGAG
CGCTTGGAGCGGTCGCTGGGCGGAAGGACGAAGGCGGCGGGGGCTCCGTC
GGGGGCAGGATCAGGGTCCGGGGTGAGACCCTCCCCTGGCGGCGCGGGCG
TCCGAGAGCGGCAGCACAGGCTGTACGACGTGAACGGGGGGGGCACGCAG
AAGGGCAAGCGTGGAGGGGGAGGCGGGAAGGTCGCCGTCGCGGGCAAAGA
CCCCTCCAAGAAGCGTCCGTTGTCCTCGGGAGGAGGGAAAGGGGGCGAGG
GAGAAGGGGGCAAGAAGCCGAAGAAACGGAGTTCTCCCGCCACTGTGAAT
GCCAGCGGTGGCGGAGGCGGCGGGGGCACTAGCAGCGGCAGCGGCGGCAG
CGGTGGTAGCGGTGGTAGCGGCAGAAGTGGTAGCGGCAGAAATGATAACG
GCGGCGGCGGCGGTAGCAGCGCCGCGAGGGACGGCGGGAGCAGTGCCAGT
AGCAGCGGCAGCGGTAACGGCAGCGGCGGCGGGTCTTGAACCGCTCAGCC
TAAAGCGCGAGCGCGATCGCGAGCGCTTGGAGCGGTCGCTGGGCGGAAGG
ACGAAGGCGGCGGGGGCTCCGTCGGGGGCAGGATCAGGGTCCGGGGTGAG
ACCCTCCCCTGGCGGCGCGGGCGTCCGAGAGCGGCAGCACAGGCTGTACG
ACGTGAACGGGGGGGGCACGCAGAAGGGCAAGCGTGGAGGGGGAGGCGGG
AAGGTCGCCGTCGCGGGCAAAGACCCCTCCAAGAAGCGTCCGTTGTCCTC
GGGAGGAGGGAAAGGGGGCGAGGGAGAAGGGGGCAAGAAGCCGAAGAAAC
GGAGTTCTCCCGCCACTGTGAATGCCAGCGGTGGCGGAGGCGGCGGGGGC
ACTAGCAGCGGCAGCGGCGGCAGCGGTGGTAGCGGTGGTAGCGGCAGAAG
TGGTAGCGGCAGAAATGATAACGGCGGCGGCGGCGGTAGCAGCGCCGCGA
GGGACGGCGGGAGCAGTGCCAGTAGCAGCGGCAGCGGTAACGGCAGCGGC
GGCGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGTGTTGGC
GGAGCGGATGATGGTGCAGGGTCATCGGCGGCAGTGGCCTTGGCAGGGGC
GGCCGCGGCGGGGGTCGAAATCGATGAGCTGGTGGCGGAGCGCATCGGGC
GTATGGGACCGGAGGAGCTGGGTGCCGCAGTGGCACGCGTCAAAAACGCG
AAGAAGTCAGAAAAGACTCCGCCGCTGGCCAAGTCTCTCCCCAAGAAGGA
CACGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGTGTTGGCGG
AGCGGATGATGGTGCAGGGTCATCGGCGGCAGTGGCCTTGGCAGGGGCGG
CCGCGGCGGGGGTCGAAATCGATGAGCTGGTGGCGGAGCGCATCGGGCGT
ATGGGACCGGAGGAGCTGGGTGCCGCAGTGGCACGCGTCAAAAACGCGAA
GAAGTCAGAAAAGACTCCGCCGCTGGCCAAGTCTCTCCCCAAGAAGGACA back to top
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