mRNA_H-canaliculatus_F_contig12230.1916.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12230.1916.1
Unique NamemRNA_H-canaliculatus_F_contig12230.1916.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: D8LI64_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI64_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 3.390e-35
Identity = 70/85 (82.35%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    1 EHLDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEGVPWIALECVRERAGGHPCDRRRYGSPSPGWAP 255
            EHLDARLTDLGKQQCA LKAT HGIEKEA+LVVVSPL RAIQTA LTID+VEGVPW+ALECVRERAG HPCDRRR  S   G  P
Sbjct:   56 EHLDARLTDLGKQQCATLKATKHGIEKEAQLVVVSPLARAIQTATLTIDQVEGVPWVALECVRERAGAHPCDRRRCVSELKGEYP 140
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: D8LI65_ECTSI (Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI65_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 1.290e-33
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 EHLDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEGVPWIALECVRERAGGHPCDRRR 225
            EHLDARLTDLGK+QCA LKA NHGIEKEAELVVVSPLTRAI+TA+L ID+VEGVPW+ALECVRERAG  PCDRRR
Sbjct:   56 EHLDARLTDLGKEQCATLKAANHGIEKEAELVVVSPLTRAIETAMLAIDQVEGVPWVALECVRERAGVQPCDRRR 130
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A835YRM9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.900e-16
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    7 LDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEG-VPWIALECVRERAGGHPCDRRR 225
            +DARLTDLG++QC  L+       +E +L+VVSP++RAI TA++  DKV   VPWIALEC+RER+G H CD+RR
Sbjct:   62 MDARLTDLGREQCRTLQGRVVSNCEEVQLMVVSPMSRAIDTAMIAFDKVPSHVPWIALECIRERSGNHACDKRR 135
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A836CMC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMC3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.310e-16
Identity = 42/75 (56.00%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    4 HLDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEG-VPWIALECVRERAGGHPCDRRR 225
            HLDARLTDLG++Q   L AT      E +L+VVSP++RA++TA +  ++V   +PW+ALEC RERAG HPCD+RR
Sbjct:   66 HLDARLTDLGREQAQGLGATLGTTIDEIQLMVVSPMSRALETASIAFEQVPSHIPWVALECARERAGNHPCDKRR 140
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A7S2Y325_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y325_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 8.220e-16
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:   10 DARLTDLGKQQCAKLKAT---NHGIEKEAELVVVSPLTRAIQTALLTIDKVEGVPWIALECVRERAGGHPCDRRR 225
            DARLT+ GK+QC +       NH + K  +LV+VSPLTR ++TA L +DKV GVPW+ALEC+RER  G+PCDRRR
Sbjct:   93 DARLTEHGKRQCREANEAEKLNHHL-KGHQLVLVSPLTRCLETAELVVDKVAGVPWVALECIRERLHGNPCDRRR 166
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A7S3HBU0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBU0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.400e-12
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   10 DARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEG-VPWIALECVRERAGGHPCDRR 222
            DA LT+LG +QC   + +N     +A+L+VVSPL R +QTA     +++G +PW+A+EC+RE  G HPCDRR
Sbjct:   89 DATLTELGLEQCKNFRESNTNSFADAQLLVVSPLRRTMQTATHCFPQLKGNIPWVAVECLREMTGLHPCDRR 160
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A4D9DAJ2_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAJ2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.120e-11
Identity = 38/73 (52.05%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    7 LDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEGVPWIALECVRERAGGHPCDRRR 225
            LD  LT LG  QC  LK +   I+   +LVV+SPL RA+ TA L  D  + V WIALE VRER G + CD+RR
Sbjct:  107 LDPELTKLGVSQCLALKPSVEAIQSSIDLVVISPLRRALMTAALAFDHRKEVSWIALETVRERIGKNACDKRR 179
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A7S4JBS8_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JBS8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.530e-10
Identity = 39/77 (50.65%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    4 HLDARLTDLGKQQC-AKLKATNHGIEKEAELVVVSPLTRAIQTALLTI--DKVEGVPWIALECVRERAGGHPCDRRR 225
            H DARLT+ G +QC  +L+     +  E +LV+VSP TRA  TAL     D  E V W ALEC+RE++G HPCD RR
Sbjct:   60 HHDARLTEGGMKQCDGRLREHAKSVAGEVDLVLVSPCTRATDTALRGFGGDVSESVKWYALECLREKSGQHPCDGRR 136
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: A0A482S1J1_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1J1_9ARCH)

HSP 1 Score: 68.9 bits (167), Expect = 1.690e-9
Identity = 30/73 (41.10%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   10 DARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDKVEG-VPWIALECVRERAGGHPCDRRR 225
            DA +T+ G +QC +L      +   ++L+VVSP++R +QTA  +   ++  +PW+++EC+RER G HPCD+RR
Sbjct:   76 DAHITEEGLKQCQELSEKMKHVTAHSQLLVVSPMSRTLQTASHSFPHLQHKIPWVSIECIRERTGLHPCDKRR 148
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BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Match: C1E154_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E154_MICCC)

HSP 1 Score: 67.0 bits (162), Expect = 1.020e-8
Identity = 40/77 (51.95%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:   10 DARLTDLGKQQCAKLKATNHGIE--KEAELVVVSPLTRAIQTALLTIDKV---EGVPWIALECVRERAGGHPCDRRR 225
            DARLT  G+QQC  L  T   IE  + A LVV SPLTR +QTALL+   +   E VP++ALEC+RE      CD RR
Sbjct:   58 DARLTGFGEQQCEALSRTPAAIEAQRSASLVVTSPLTRCVQTALLSFPDIARREEVPFVALECIRETVN-FACDGRR 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12230.1916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI64_ECTSI3.390e-3582.35Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
D8LI65_ECTSI1.290e-3386.67Catalytic, putative n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A835YRM9_9STRA3.900e-1656.76Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CMC3_9STRA4.310e-1656.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y325_9STRA8.220e-1658.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HBU0_9STRA6.400e-1248.61Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A4D9DAJ2_9STRA6.120e-1152.05Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S4JBS8_9STRA4.530e-1050.65Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A482S1J1_9ARCH1.690e-941.10Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
C1E154_MICCC1.020e-851.95Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12230contigH-canaliculatus_F_contig12230:135..2201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.4
Seed ortholog evalue3.5e-31
Seed eggNOG ortholog2880.D8LI64
EggNOG free text desc.isomerase activity
EggNOG OGsKOG4754@1,KOG4754@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1393
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12230.1916.1prot_H-canaliculatus_F_contig12230.1916.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12230 135..1257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.5812461-CDS-H-canaliculatus_F_contig12230:134..2841622928937.5812461-CDS-H-canaliculatus_F_contig12230:134..284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12230 135..284 +
1696845620.189235-CDS-H-canaliculatus_F_contig12230:134..2841696845620.189235-CDS-H-canaliculatus_F_contig12230:134..284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12230 135..284 +
1622928937.5951843-CDS-H-canaliculatus_F_contig12230:960..12571622928937.5951843-CDS-H-canaliculatus_F_contig12230:960..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12230 961..1257 +
1696845620.2016976-CDS-H-canaliculatus_F_contig12230:960..12571696845620.2016976-CDS-H-canaliculatus_F_contig12230:960..1257Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12230 961..1257 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928937.613454-UTR-H-canaliculatus_F_contig12230:1257..22011622928937.613454-UTR-H-canaliculatus_F_contig12230:1257..2201Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12230 1258..2201 +
1696845620.212356-UTR-H-canaliculatus_F_contig12230:1257..22011696845620.212356-UTR-H-canaliculatus_F_contig12230:1257..2201Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig12230 1258..2201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12230.1916.1

>prot_H-canaliculatus_F_contig12230.1916.1 ID=prot_H-canaliculatus_F_contig12230.1916.1|Name=mRNA_H-canaliculatus_F_contig12230.1916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=149bp
EHLDARLTDLGKQQCAKLKATNHGIEKEAELVVVSPLTRAIQTALLTIDK
VEGVPWIALECVRERAGGHPCDRRRYGSPSPGWAPGRRWCDGRRLTVGVL
PEPVGPSWRWPPPSERSRGLPSGALTRFTLFRKKSRQHQGKTFLWDKA*
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mRNA from alignment at H-canaliculatus_F_contig12230:135..2201+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12230.1916.1 ID=mRNA_H-canaliculatus_F_contig12230.1916.1|Name=mRNA_H-canaliculatus_F_contig12230.1916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2067bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12230:135..2201+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCATCTCGATGCCAGACTAACCGACCTCGGCAAGCAGCAGTGCGCGAA
GCTGAAGGCGACGAACCACGGCATCGAAAAGGAGGCCGAGTTGGTGGTGG
TATCCCCTCTCACCCGAGCCATTCAGACGGCATTGTTGACCATCGACAAG
GCAAGGTCGAGAAAACGTTGAGCGCAGCGAATCCTTCAGACTTTTTTTTG
TCGATGCGGTTTGATTATCTCGCGGCTGTTGGTTTGTCTCGTCCGCTGAT
TTTTATTTTTTTGGACCGCGAGGAGTGTGTCTGGAGAGGCCTTGTGTGGA
CCGGGTGTTCGACCCCGGACTCCTGAAGCATCTCCATGTAGATGTGGACA
GTTAGTTGCACATCGAATGTCTAATTTTACTCGCTTTCTTCAGCAGCGCC
GCTGCACCCCACGCCCAAACGTTGTCAACTCGCCGGTGCGCGTAGGAGTC
AGTGAACGGGGTCCTCGACTCTCGGCGCGGCGCCGACGTTGTTGGGTGTT
ACCCGCCACCAACGGTGGAGCGTGGATACTGGTGTTGCCATCCGGTCGCC
TTGGCGATGTTTCCGGCGATTGCGGAGAATGTCAGCACAACCCATACGCC
AAGCCGGCAGCTCTTCTCGCAAGTTGTTTTTTTTTACTTTTTCACGGGCG
GCTTCACTCACGTTGGGCGGTTTTACGGATGTGAGCGAGACCCCGTGGGT
TCAGAAACCATAACGCTGGCTTCCCGTTTGGTCGCAGCTTAGGCCTCCAA
CTCTGCCGGACCGCCCCCATATCTCAGCAACACTTGTGTGCCATCCATTC
GTCTCTCCGCAAATTTCGTGTCTCAGGTCGAGGGCGTACCATGGATAGCT
CTGGAGTGCGTTCGAGAGAGAGCTGGAGGGCACCCTTGCGACCGCCGGAG
GTATGGCTCACCCTCCCCCGGTTGGGCACCGGGAAGACGTTGGTGCGACG
GAAGGAGGTTGACTGTTGGCGTTCTCCCGGAGCCGGTAGGGCCGTCGTGG
CGTTGGCCACCGCCGTCGGAGCGGTCGAGGGGGTTGCCGTCTGGTGCTCT
TACTCGTTTCACTCTTTTTAGGAAAAAGAGTCGACAGCACCAAGGGAAAA
CGTTCCTCTGGGACAAAGCATAGCGACTCAGGGGGGTTGTGCGAAATTTC
TTACGGTGAGGGTTCAGCATGGGGGGTAGCCTTTTTTTCGTGTCCGATGA
GACGGGGGGTAGGAGATATACGCGCAAGGCGCGTTTTGACTTCCTTTTTC
GTTTTATTTCTGGAGGTTTCCGATCGCACACGGGTTGGGCTGGGGTAAAG
GACTGCGGTCGACGCCAACAAGGGCTTGGTGTCCTTGCTGGGAGAGGTTC
TCATCGATCCCTCAGTCTCCAGAACGATGAGCTCTCGTGGGGCACAGCAG
CGGGGCAATGCTGACAAGCACCGGACGAAGAGGGGGGCCTTGGATGAATT
CCTGGTCTCTTCCTGGAAGTCTCGTACGTAGGGGGATAACCGAGTAGTGC
CCGGGAGGGTACGGGAGGCGTCCCGATGGTGCGCCGATGGCGGACCAAAG
GCAGCGCCAACACAGAGCACACGCAGCGGGGTTAGATACGCTCTAAGCTG
GCGCCCTGACGTGTGGCGGCAGCGAGCGAGACGAGACAGGAGAGACACGA
AAAATCAGGACAGGAGACAGAATGGACTGGAATAGGACTGATGCAGGATG
AACCTCCGCACGCATACACGTGTGCGGAAAGTTCAGGCAGGTCATGGCGG
CCCGTGAGCGCCGTTCGGAAGATCCGTGGGAATGTAAAGCACGTGTGTAC
GGTAACGAAGAGACTCACAGTTTTGGGTTTTTCACAGGCTTTTCCATGTT
GATCGATCCGGAACGGCGAGGCTTCTCGGGGACGTCAAGCGTTTCGCCCG
AAAGCGAGCTTTTGTGGCCGTTGTTGATGTTGTTGATGATGTCGCGTCCC
CGAGGTGCAGCCCGCGGTCACGCTGCCTGGCACGGCGCCCCACCAGCGAC
GATGTGATCGCGACAAATCAAGACGCCCGCAAACGAGCGCGAGTGCAAAG
GCCCCCGCCCACCCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12230:135..2201+

>mRNA_H-canaliculatus_F_contig12230.1916.1 ID=mRNA_H-canaliculatus_F_contig12230.1916.1|Name=mRNA_H-canaliculatus_F_contig12230.1916.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=894bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12230:135..2201+ (Hapterophycus canaliculatus Oshoro5f female)
GAGCATCTCGATGCCAGACTAACCGACCTCGGCAAGCAGCAGTGCGCGAA
GCTGAAGGCGACGAACCACGGCATCGAAAAGGAGGCCGAGTTGGTGGTGG
TATCCCCTCTCACCCGAGCCATTCAGACGGCATTGTTGACCATCGACAAG
GAGCATCTCGATGCCAGACTAACCGACCTCGGCAAGCAGCAGTGCGCGAA
GCTGAAGGCGACGAACCACGGCATCGAAAAGGAGGCCGAGTTGGTGGTGG
TATCCCCTCTCACCCGAGCCATTCAGACGGCATTGTTGACCATCGACAAG
GTCGAGGGCGTACCATGGATAGCTCTGGAGTGCGTTCGAGAGAGAGCTGG
AGGGCACCCTTGCGACCGCCGGAGGTATGGCTCACCCTCCCCCGGTTGGG
CACCGGGAAGACGTTGGTGCGACGGAAGGAGGTTGACTGTTGGCGTTCTC
CCGGAGCCGGTAGGGCCGTCGTGGCGTTGGCCACCGCCGTCGGAGCGGTC
GAGGGGGTTGCCGTCTGGTGCTCTTACTCGTTTCACTCTTTTTAGGAAAA
AGAGTCGACAGCACCAAGGGAAAACGTTCCTCTGGGACAAAGCATAGGTC
GAGGGCGTACCATGGATAGCTCTGGAGTGCGTTCGAGAGAGAGCTGGAGG
GCACCCTTGCGACCGCCGGAGGTATGGCTCACCCTCCCCCGGTTGGGCAC
CGGGAAGACGTTGGTGCGACGGAAGGAGGTTGACTGTTGGCGTTCTCCCG
GAGCCGGTAGGGCCGTCGTGGCGTTGGCCACCGCCGTCGGAGCGGTCGAG
GGGGTTGCCGTCTGGTGCTCTTACTCGTTTCACTCTTTTTAGGAAAAAGA
GTCGACAGCACCAAGGGAAAACGTTCCTCTGGGACAAAGCATAG
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