mRNA_H-canaliculatus_F_contig12102.1828.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig12102.1828.1
Unique NamemRNA_H-canaliculatus_F_contig12102.1828.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig12102.1828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig12102contigH-canaliculatus_F_contig12102:3400..3739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_001790.2
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928924.323092-CDS-H-canaliculatus_F_contig12102:3399..37381622928924.323092-CDS-H-canaliculatus_F_contig12102:3399..3738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12102 3400..3738 +
1696845614.4620092-CDS-H-canaliculatus_F_contig12102:3399..37381696845614.4620092-CDS-H-canaliculatus_F_contig12102:3399..3738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig12102 3400..3738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig12102.1828.1prot_H-canaliculatus_F_contig12102.1828.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig12102 3400..3738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig12102.1828.1

>prot_H-canaliculatus_F_contig12102.1828.1 ID=prot_H-canaliculatus_F_contig12102.1828.1|Name=mRNA_H-canaliculatus_F_contig12102.1828.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
ARDEQTRAALIRAAAADPTVAGAHTWTADTNEHLGTGRATEETPRSHNKQ
NDGSTRDLVEMLSDALHGSNVGMVNGGIRIQTNIVKFSGTMGDEVAEAMV
FMARAQQVFKELG
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mRNA from alignment at H-canaliculatus_F_contig12102:3400..3739+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig12102.1828.1 ID=mRNA_H-canaliculatus_F_contig12102.1828.1|Name=mRNA_H-canaliculatus_F_contig12102.1828.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=340bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12102:3400..3739+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGAGACGAACAGACAAGAGCAGCGCTCATCAGAGCCGCGGCCGCCGA
CCCGACGGTCGCGGGCGCACACACATGGACCGCAGACACGAACGAACATC
TAGGAACAGGACGAGCTACAGAGGAGACACCACGTTCTCACAACAAACAA
AACGACGGGTCTACGCGTGATCTTGTAGAAATGCTTAGTGATGCTTTGCA
TGGGTCGAACGTAGGTATGGTAAACGGGGGGATAAGGATACAAACAAACA
TAGTGAAGTTTTCGGGGACAATGGGGGATGAGGTCGCAGAGGCGATGGTT
TTCATGGCAAGAGCACAACAGGTCTTCAAGGAGTTGGGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig12102:3400..3739+

>mRNA_H-canaliculatus_F_contig12102.1828.1 ID=mRNA_H-canaliculatus_F_contig12102.1828.1|Name=mRNA_H-canaliculatus_F_contig12102.1828.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig12102:3400..3739+ (Hapterophycus canaliculatus Oshoro5f female)
GCAAGAGACGAACAGACAAGAGCAGCGCTCATCAGAGCCGCGGCCGCCGA
CCCGACGGTCGCGGGCGCACACACATGGACCGCAGACACGAACGAACATC
TAGGAACAGGACGAGCTACAGAGGAGACACCACGTTCTCACAACAAACAA
AACGACGGGTCTACGCGTGATCTTGTAGAAATGCTTAGTGATGCTTTGCA
TGGGTCGAACGTAGGTATGGTAAACGGGGGGATAAGGATACAAACAAACA
TAGTGAAGTTTTCGGGGACAATGGGGGATGAGGTCGCAGAGGCGATGGTT
TTCATGGCAAGAGCACAACAGGTCTTCAAGGAGTTGGGGGCAAGAGACGA
ACAGACAAGAGCAGCGCTCATCAGAGCCGCGGCCGCCGACCCGACGGTCG
CGGGCGCACACACATGGACCGCAGACACGAACGAACATCTAGGAACAGGA
CGAGCTACAGAGGAGACACCACGTTCTCACAACAAACAAAACGACGGGTC
TACGCGTGATCTTGTAGAAATGCTTAGTGATGCTTTGCATGGGTCGAACG
TAGGTATGGTAAACGGGGGGATAAGGATACAAACAAACATAGTGAAGTTT
TCGGGGACAATGGGGGATGAGGTCGCAGAGGCGATGGTTTTCATGGCAAG
AGCACAACAGGTCTTCAAGGAGTTGGGG
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