mRNA_H-canaliculatus_F_contig11781.1579.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11781.1579.1
Unique NamemRNA_H-canaliculatus_F_contig11781.1579.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: A0A6H5LF20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF20_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 3.140e-13
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 2 
Query:    2 VKQASLVMGQELGSFHKGLHVADDIRNLGAVGNANAGESKHKEVKQS 142
            VKQAS V G  L S HKGLH+ADDIRNLGAVGN NAGES HK++K+S
Sbjct:   23 VKQASRVAGLALNSIHKGLHIADDIRNLGAVGNTNAGESNHKDLKKS 69
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.900e-11
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 2 
Query:    2 VKQASLVMGQELGSFHKGLHVADDIRNLGAVGNANAGESKHKEVKQSAPSASGRDN 169
            VKQA+ VMG  LG+ HKGLH+A ++   G V N N GE+K+KE+K SAPSASGRDN
Sbjct:  285 VKQATRVMGVALGTIHKGLHIARNVVVNGVVTNCNVGEAKNKELKASAPSASGRDN 340
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.320e-10
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:    2 VKQASLVMGQELGSFHKGLHVADDIRNLGAVGNANAGESKHKEVKQSAPSASGRDN 169
            VKQA+ V+G  LG+ HKGLH+  ++   G V N N GE+K+KE+K SAPSASGRDN
Sbjct:  206 VKQATRVIGVALGTIHKGLHITRNVVVNGVVTNCNVGEAKNKELKASAPSASGRDN 261
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.380e-9
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:    2 VKQASLVMGQELGSFHKGLHVADDIRNLGAVGNANAGESKHKEVKQSAPSASGRDN 169
            VKQA+ V+G  LG+ HKGLH+A ++   G V N N  E+K+KE+K SAPSASGRDN
Sbjct:  137 VKQATRVIGVALGTIHKGLHIARNVVVNGDVTNCNVEEAKNKELKASAPSASGRDN 192
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 8.830e-8
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2 
Query:    2 VKQASLVMGQELGSFHKGLHVADDIRNLGAVGNANAGESKHKEVKQSAPSASGRDN 169
            VKQA+ V+   LG+ HKGL +A ++   G V N N GE+K+KE+K SAPSASGR+N
Sbjct:  135 VKQATRVIRVALGTIHKGLDIARNLVVNGVVTNCNVGEAKNKELKASAPSASGRNN 190
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Match: A0A6H5JYK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYK1_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 3.270e-5
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 2 
Query:   74 IRNLGAVGNANAGESKHKEVKQSAPSASGRDN 169
             R  GAVGNAN GESKHKEVK+SA SASGRDN
Sbjct:   27 FRTKGAVGNANFGESKHKEVKKSATSASGRDN 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11781.1579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5LF20_9PHAE3.140e-1374.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW9_ECTSI1.900e-1162.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K975_9PHAE2.320e-1058.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR91_9PHAE1.380e-958.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC7_9PHAE8.830e-855.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYK1_9PHAE3.270e-581.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11781contigH-canaliculatus_F_contig11781:2763..3337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size172
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928876.812478-CDS-H-canaliculatus_F_contig11781:2763..28481622928876.812478-CDS-H-canaliculatus_F_contig11781:2763..2848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11781 2764..2848 -
1696845598.0035121-CDS-H-canaliculatus_F_contig11781:2763..28481696845598.0035121-CDS-H-canaliculatus_F_contig11781:2763..2848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11781 2764..2848 -
1622928876.8288877-CDS-H-canaliculatus_F_contig11781:3251..33371622928876.8288877-CDS-H-canaliculatus_F_contig11781:3251..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11781 3252..3337 -
1696845598.01363-CDS-H-canaliculatus_F_contig11781:3251..33371696845598.01363-CDS-H-canaliculatus_F_contig11781:3251..3337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11781 3252..3337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11781.1579.1prot_H-canaliculatus_F_contig11781.1579.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11781 2764..3337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11781.1579.1

>prot_H-canaliculatus_F_contig11781.1579.1 ID=prot_H-canaliculatus_F_contig11781.1579.1|Name=mRNA_H-canaliculatus_F_contig11781.1579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=57bp
GQAGLSRNGTRAGLFPQRAACCRRYPELRCRRQRERRGIQAQGGETICAI
CQRSRQP
back to top

mRNA from alignment at H-canaliculatus_F_contig11781:2763..3337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11781.1579.1 ID=mRNA_H-canaliculatus_F_contig11781.1579.1|Name=mRNA_H-canaliculatus_F_contig11781.1579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=575bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11781:2763..3337- (Hapterophycus canaliculatus Oshoro5f female)
GGTCAAGCAGGCCTCTCTCGTAATGGGACAAGAGCTGGGCTCTTTCCACA
AAGGGCTGCATGTTGCCGACGATATCCGGAACTTAGGCAAGTCTCTCTGC
GGTACTTCCAAACCAGCTGGAAAGTAGCTCGCTCACAACCGAGATGCTGA
TAGGCGTGCTGCTTTCCGCCATGTTTCCGGCGATCACGTCGTCGACCGTC
GGTAGAGCGCAAGCTATCCCGCCTTTGGAACCTACTACGATAGTCACCGG
TGCTGCTGTGAGGCGTGCTTTTCGGGGTCGGCTGATCGGCGATACCCGCT
ACCCAACCTGGTACCACGCCACTGCACCAGACGACAGCAACCCGACAAGC
TTCCTGCTTCTGAAATGCGATACAGACCATGCCGTTCGTCCTGAAGCAGA
GCCTTTTTCACGCCGTGCGAGGGTTGATTCTACACTTGGTTCACAGTCTA
GTCCTTCCTCTGCCGCTGTGTTGTTGTTGGTCACGAAAGGTGCCGTCGGC
AACGCGAACGCCGGGGAATCCAAGCACAAGGAGGTGAAACAATCTGCGCC
ATCTGCCAGCGGTCGCGACAACCCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11781:2763..3337-

>mRNA_H-canaliculatus_F_contig11781.1579.1 ID=mRNA_H-canaliculatus_F_contig11781.1579.1|Name=mRNA_H-canaliculatus_F_contig11781.1579.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11781:2763..3337- (Hapterophycus canaliculatus Oshoro5f female)
GGTCAAGCAGGCCTCTCTCGTAATGGGACAAGAGCTGGGCTCTTTCCACA
AAGGGCTGCATGTTGCCGACGATATCCGGAACTTAGGGTCAAGCAGGCCT
CTCTCGTAATGGGACAAGAGCTGGGCTCTTTCCACAAAGGGCTGCATGTT
GCCGACGATATCCGGAACTTAGGTGCCGTCGGCAACGCGAACGCCGGGGA
ATCCAAGCACAAGGAGGTGAAACAATCTGCGCCATCTGCCAGCGGTCGCG
ACAACCCGTGCCGTCGGCAACGCGAACGCCGGGGAATCCAAGCACAAGGA
GGTGAAACAATCTGCGCCATCTGCCAGCGGTCGCGACAACCC
back to top