mRNA_H-canaliculatus_F_contig11731.1538.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11731.1538.1
Unique NamemRNA_H-canaliculatus_F_contig11731.1538.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: D7FZX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX8_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.360e-24
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            MSLSELPA QKNDMVVSLAALLLEDAGS L+AEN+SAV AATKNE+P YYP LFAAMLEKS G
Sbjct:   38 MSLSELPAPQKNDMVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG 100          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A6H5KQL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL7_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 6.980e-17
Identity = 42/50 (84.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:   40 MVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            MVVSLAALLLEDAGS L+AEN+SAV AATKNE+P YYP LFAAMLEKS G
Sbjct:    1 MVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG 50          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: W7TDP6_9STRA (60s acidic ribosomal protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TDP6_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.790e-14
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 1
Query:    1 MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            MSL+EL   QK +MV+SL+ALLL+D+G ++SAENL AV  A+ N +  YYPAL+A+++EK+GG
Sbjct:    1 MSLAELSPAQKEEMVISLSALLLQDSGVDMSAENLDAVIKASGNTVAAYYPALYASLIEKAGG 63          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A482S1F3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1F3_9ARCH)

HSP 1 Score: 64.3 bits (155), Expect = 4.540e-12
Identity = 31/54 (57.41%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   28 QKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            +K+ +VVSLAALLL D G+E+SA++LS+V +A+ N +P YYP LFA  +EK+GG
Sbjct:   11 EKDQLVVSLAALLLSDVGAEISADSLSSVLSASNNTVPAYYPTLFAGFIEKAGG 64          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A835YLZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLZ6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.270e-12
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            M+ +EL   QK++MVVSLAALL EDAG ELSAENL++  +A+ N++  Y+ +LFA+ LEK+GG
Sbjct:    1 MAFAELTEGQKSEMVVSLAALLCEDAGVELSAENLNSAVSASGNKVAPYWTSLFASYLEKAGG 63          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A7S2UUV6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUV6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.050e-11
Identity = 33/63 (52.38%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            M+LS+L    K +MVVSLAAL+L D+G ++SA+NL+AV +A+ N++  Y+  LFA+ LEK+GG
Sbjct:    1 MALSDLSGAAKEEMVVSLAALVLADSGVDMSADNLNAVVSASGNDIAPYWSTLFASFLEKAGG 63          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A7S3HK71_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HK71_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.240e-10
Identity = 28/59 (47.46%), Postives = 46/59 (77.97%), Query Frame = 1
Query:   13 ELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            ++    K+ +V SLAA++L D+G++++AE+L+AV AA+ N++P YY  LFA+ +EKSGG
Sbjct:    6 QVTGADKDQLVTSLAAIVLSDSGADITAESLNAVIAASGNQVPAYYATLFASFIEKSGG 64          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A6V1KRU0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KRU0_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 4.880e-9
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            MSL+EL    K ++VVSLA+L++ D+ ++LSAENL AV  A+ N +  Y+ +LFA+ LEKS G
Sbjct:    1 MSLAELSGAAKEELVVSLASLVVADSDADLSAENLEAVIKASGNSVASYWTSLFASFLEKSEG 63          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A7S0QBW6_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0QBW6_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 5.280e-8
Identity = 24/59 (40.68%), Postives = 44/59 (74.58%), Query Frame = 1
Query:   13 ELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            ++    K+ +V SLAA++L D G+++SA+ +++V +A+ N +P YYP L+A+ +EK+GG
Sbjct:   15 QVTGADKDQLVTSLAAIILSDCGADISADAINSVLSASGNTVPAYYPTLYASYIEKAGG 73          
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Match: A0A7S0FQS0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FQS0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.830e-7
Identity = 30/62 (48.39%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    4 SLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYYPALFAAMLEKSGG 189
            SL++L A+QK D+V SLAA+++   G E+SA+ LSAVA     +L G   +LFA++++KSGG
Sbjct:   31 SLTDLSASQKEDLVASLAAMVVGSTGGEMSADALSAVAKEAGCDLSGAMASLFASVVDKSGG 92          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11731.1538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FZX8_ECTSI1.360e-2485.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQL7_9PHAE6.980e-1784.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TDP6_9STRA2.790e-1457.1460s acidic ribosomal protein n=2 Tax=Monodopsidace... [more]
A0A482S1F3_9ARCH4.540e-1257.41Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A835YLZ6_9STRA5.270e-1257.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UUV6_9STRA4.050e-1152.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3HK71_9STRA7.240e-1047.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6V1KRU0_HETAK4.880e-950.79Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0QBW6_9EUKA5.280e-840.68Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A7S0FQS0_9STRA3.830e-748.39Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11731contigH-canaliculatus_F_contig11731:2562..3262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue8.5e-19
Seed eggNOG ortholog2880.D7FZX8
KEGG koko:K02942
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
EggNOG OGs2D6V1@1,2S57R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons2
Model size189
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928871.076725-CDS-H-canaliculatus_F_contig11731:2561..26401622928871.076725-CDS-H-canaliculatus_F_contig11731:2561..2640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11731 2562..2640 +
1696845595.525279-CDS-H-canaliculatus_F_contig11731:2561..26401696845595.525279-CDS-H-canaliculatus_F_contig11731:2561..2640Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11731 2562..2640 +
1622928871.088741-CDS-H-canaliculatus_F_contig11731:3152..32621622928871.088741-CDS-H-canaliculatus_F_contig11731:3152..3262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11731 3153..3262 +
1696845595.5360792-CDS-H-canaliculatus_F_contig11731:3152..32621696845595.5360792-CDS-H-canaliculatus_F_contig11731:3152..3262Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11731 3153..3262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11731.1538.1prot_H-canaliculatus_F_contig11731.1538.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11731 2562..3262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11731.1538.1

>prot_H-canaliculatus_F_contig11731.1538.1 ID=prot_H-canaliculatus_F_contig11731.1538.1|Name=mRNA_H-canaliculatus_F_contig11731.1538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=63bp
MSLSELPATQKNDMVVSLAALLLEDAGSELSAENLSAVAAATKNELPGYY
PALFAAMLEKSGG
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mRNA from alignment at H-canaliculatus_F_contig11731:2562..3262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11731.1538.1 ID=mRNA_H-canaliculatus_F_contig11731.1538.1|Name=mRNA_H-canaliculatus_F_contig11731.1538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=701bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11731:2562..3262+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCTCTCGGAGCTGCCAGCAACCCAGAAGAACGACATGGTCGTTAG CCTCGCAGCCCTCCTCCTCGAAGACGCAGGTAAGCCTGACTGGTAAGCCT GTATCGTGTCTCGCGTACTCCGCTGTAGTCTTTCCCTGTAGCCTCGCTTC ACGCCGGTCCAGTGCCGATGTCTTATTGGTGTAAGCCTCGTGCAAAGATA GCCATTGCGAAGAGGGGTCAAGACTTGGCTGCACACTGTGCCTTTCTGGT AATCTGAGCGGTGTGGTCTAGCATTCAGGCGAGGGGCCTCATACTTCATT TGCCCTGTTCTTGTTCATCTTTTCCTCGTCGCTCTCCAATTTTTCTTCAC TGCCTGACCTCCCAACCTCTTCCCAACGGCCATAATTAGTCGCCTACGTA GTACACTCTCCGTTTCTCGTCGCTCTTACAGAGATTTGCCATCCCTGTGC CATCTTTCCCTCACCTTCCCTGGTCCCACTCCTATCCTCTGTCCCCCTTT TCTGTACCTGCTCCCCGCCTCCCGAACCCCGTAAAAATAAACCAAAAATT CGCTTTTTGTCGTTTCTGGCGCCCATCCCCTCCGTCGTCAGGCTCCGAGC TCTCCGCTGAGAACCTCAGCGCGGTGGCCGCGGCGACCAAGAACGAGCTC CCGGGGTACTACCCCGCGCTCTTCGCGGCCATGCTCGAGAAGAGCGGGGG C
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11731:2562..3262+

>mRNA_H-canaliculatus_F_contig11731.1538.1 ID=mRNA_H-canaliculatus_F_contig11731.1538.1|Name=mRNA_H-canaliculatus_F_contig11731.1538.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=378bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11731:2562..3262+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTCTCTCGGAGCTGCCAGCAACCCAGAAGAACGACATGGTCGTTAG
CCTCGCAGCCCTCCTCCTCGAAGACGCAGATGTCTCTCTCGGAGCTGCCA
GCAACCCAGAAGAACGACATGGTCGTTAGCCTCGCAGCCCTCCTCCTCGA
AGACGCAGGCTCCGAGCTCTCCGCTGAGAACCTCAGCGCGGTGGCCGCGG
CGACCAAGAACGAGCTCCCGGGGTACTACCCCGCGCTCTTCGCGGCCATG
CTCGAGAAGAGCGGGGGCGCTCCGAGCTCTCCGCTGAGAACCTCAGCGCG
GTGGCCGCGGCGACCAAGAACGAGCTCCCGGGGTACTACCCCGCGCTCTT
CGCGGCCATGCTCGAGAAGAGCGGGGGC
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