mRNA_H-canaliculatus_F_contig11728.1536.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11728.1536.1
Unique NamemRNA_H-canaliculatus_F_contig11728.1536.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11728.1536.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.150e-9
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:  244 DPDLQDLSMPVVIEPSSAAVGDRGWDRRSPPRNG---NGNGYRGSGFHDRHSG 393
            D D QDLS+PVVIEPS+  V  RGWD RSP RNG   NGNGYRG   HDR+SG
Sbjct:  125 DLDFQDLSLPVVIEPSTVTVRGRGWDNRSPGRNGSGGNGNGYRGGEHHDRYSG 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11728.1536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2A1_9PHAE4.150e-967.92Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11728contigH-canaliculatus_F_contig11728:3163..4050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-09_003620.1
Exons1
Model size888
Cds size888
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928870.7589667-CDS-H-canaliculatus_F_contig11728:3162..40501622928870.7589667-CDS-H-canaliculatus_F_contig11728:3162..4050Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11728 3163..4050 -
1696845595.329846-CDS-H-canaliculatus_F_contig11728:3162..40501696845595.329846-CDS-H-canaliculatus_F_contig11728:3162..4050Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11728 3163..4050 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11728.1536.1prot_H-canaliculatus_F_contig11728.1536.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11728 3163..4050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11728.1536.1

>prot_H-canaliculatus_F_contig11728.1536.1 ID=prot_H-canaliculatus_F_contig11728.1536.1|Name=mRNA_H-canaliculatus_F_contig11728.1536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=296bp
GGGQGGGGGGGGGGRGGGGGGGGGPGGGSRGGGGGGTRGPGRNGRGNKGA
GGGGGGGGGSSPPPNRDWNSNRGGGSGGGGGDPDLQDLSMPVVIEPSSAA
VGDRGWDRRSPPRNGNGNGYRGSGFHDRHSGPSWGGGGGGGGGGFRDSRP
RVGGPPLRQGGGGGRPPTTHVVGRESWERPRGGGGGGGGGGGGGGGGGGG
SRGPWNGQGSGGRQHHGAGPPGGWGGGMPSHRISQREDSRNAPPPPRYNH
DHHHGTMERNGGGGGGGGGGGGGGGGPPPPFVGRHNYPMNGGGGMG
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mRNA from alignment at H-canaliculatus_F_contig11728:3163..4050-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11728.1536.1 ID=mRNA_H-canaliculatus_F_contig11728.1536.1|Name=mRNA_H-canaliculatus_F_contig11728.1536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11728:3163..4050- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGCCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGTTCGCGGGGGGGGGGGG
GGGGGGGCACGCGGGGACCGGGCAGGAACGGCCGAGGGAACAAGGGGGCG
GGAGGAGGCGGCGGCGGCGGGGGTGGTTCAAGCCCTCCGCCCAACCGAGA
CTGGAACAGCAACCGTGGCGGCGGCAGCGGCGGCGGCGGCGGCGACCCGG
ACTTGCAGGACCTCTCGATGCCAGTGGTGATCGAGCCAAGCAGCGCCGCC
GTCGGTGACAGAGGCTGGGACAGGAGGAGTCCGCCCCGGAACGGGAACGG
GAACGGCTACCGCGGCAGCGGCTTCCACGACCGGCACAGCGGGCCGAGCT
GGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCTTCAGGGATAGTAGGCCT
CGCGTCGGCGGCCCTCCGCTTCGACAGGGGGGAGGAGGAGGGCGACCACC
CACGACGCACGTCGTCGGCCGCGAGTCGTGGGAACGGCCTCGCGGAGGTG
GTGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
AGTCGAGGCCCATGGAACGGTCAGGGCAGCGGTGGTCGGCAACACCACGG
CGCCGGCCCCCCCGGCGGATGGGGTGGAGGGATGCCCTCGCACAGGATCT
CTCAGCGCGAGGACTCCCGTAACGCTCCCCCGCCGCCGCGCTACAACCAT
GACCACCACCACGGCACCATGGAAAGGAACGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGGGCGGGGGCGGGGGTCCCCCTCCCCCTTTCGTCGGCC
GACACAACTACCCCATGAACGGGGGCGGCGGCATGGGC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11728:3163..4050-

>mRNA_H-canaliculatus_F_contig11728.1536.1 ID=mRNA_H-canaliculatus_F_contig11728.1536.1|Name=mRNA_H-canaliculatus_F_contig11728.1536.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1776bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11728:3163..4050- (Hapterophycus canaliculatus Oshoro5f female)
GGGGGGGGCCAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGTTCGCGGGGGGGGGGGG
GGGGGGGCACGCGGGGACCGGGCAGGAACGGCCGAGGGAACAAGGGGGCG
GGAGGAGGCGGCGGCGGCGGGGGTGGTTCAAGCCCTCCGCCCAACCGAGA
CTGGAACAGCAACCGTGGCGGCGGCAGCGGCGGCGGCGGCGGCGACCCGG
ACTTGCAGGACCTCTCGATGCCAGTGGTGATCGAGCCAAGCAGCGCCGCC
GTCGGTGACAGAGGCTGGGACAGGAGGAGTCCGCCCCGGAACGGGAACGG
GAACGGCTACCGCGGCAGCGGCTTCCACGACCGGCACAGCGGGCCGAGCT
GGGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCTTCAGGGATAGTAGGCCT
CGCGTCGGCGGCCCTCCGCTTCGACAGGGGGGAGGAGGAGGGCGACCACC
CACGACGCACGTCGTCGGCCGCGAGTCGTGGGAACGGCCTCGCGGAGGTG
GTGGAGGCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
AGTCGAGGCCCATGGAACGGTCAGGGCAGCGGTGGTCGGCAACACCACGG
CGCCGGCCCCCCCGGCGGATGGGGTGGAGGGATGCCCTCGCACAGGATCT
CTCAGCGCGAGGACTCCCGTAACGCTCCCCCGCCGCCGCGCTACAACCAT
GACCACCACCACGGCACCATGGAAAGGAACGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGGGGCGGGGGCGGGGGTCCCCCTCCCCCTTTCGTCGGCC
GACACAACTACCCCATGAACGGGGGCGGCGGCATGGGCGGGGGGGGCCAA
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCCGGGGGGGGGTTCGCGGGGGGGGGGGGGGGGGGGCACGC
GGGGACCGGGCAGGAACGGCCGAGGGAACAAGGGGGCGGGAGGAGGCGGC
GGCGGCGGGGGTGGTTCAAGCCCTCCGCCCAACCGAGACTGGAACAGCAA
CCGTGGCGGCGGCAGCGGCGGCGGCGGCGGCGACCCGGACTTGCAGGACC
TCTCGATGCCAGTGGTGATCGAGCCAAGCAGCGCCGCCGTCGGTGACAGA
GGCTGGGACAGGAGGAGTCCGCCCCGGAACGGGAACGGGAACGGCTACCG
CGGCAGCGGCTTCCACGACCGGCACAGCGGGCCGAGCTGGGGCGGTGGCG
GCGGCGGCGGCGGCGGCGGCTTCAGGGATAGTAGGCCTCGCGTCGGCGGC
CCTCCGCTTCGACAGGGGGGAGGAGGAGGGCGACCACCCACGACGCACGT
CGTCGGCCGCGAGTCGTGGGAACGGCCTCGCGGAGGTGGTGGAGGCGGCG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTCGAGGCCCA
TGGAACGGTCAGGGCAGCGGTGGTCGGCAACACCACGGCGCCGGCCCCCC
CGGCGGATGGGGTGGAGGGATGCCCTCGCACAGGATCTCTCAGCGCGAGG
ACTCCCGTAACGCTCCCCCGCCGCCGCGCTACAACCATGACCACCACCAC
GGCACCATGGAAAGGAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
GGGCGGGGGCGGGGGTCCCCCTCCCCCTTTCGTCGGCCGACACAACTACC
CCATGAACGGGGGCGGCGGCATGGGC
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