mRNA_H-canaliculatus_F_contig11726.1534.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11726.1534.1
Unique NamemRNA_H-canaliculatus_F_contig11726.1534.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11726.1534.1 vs. uniprot
Match: D8LGP7_ECTSI (Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP7_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 2.240e-71
Identity = 263/529 (49.72%), Postives = 291/529 (55.01%), Query Frame = 1 
Query:    1 ARQRQLLKFTPVFTPDQLLHMEMSLLEVLNWDLRPVTVYDFVRAFCNLLLPGGVVREPSSPSGPSXXXXXXXXXXXXFGVAVTLQSKEEKEKELDRLRVGAEDIADLASFDVCFVDFLPSTLATAALLLSVSGGAASPVPVTPSSPSPSSPCGLLRPTSHADVLDTCRKFMAE-----DGPAAAPGGGGLGAGGDAVSSFHRVLECVQLLGSSLAERCPAVGAASMSAAEGLARYAGLDGVR--ERVEETLVATPPPGPSKVVTPSPVAVAKSRRCATPTGVEGIMHIEMDAIHQQXXXXXXXXHQPCLCETEALHGGKDGGSKSCHSGDANPSADGPNDASVAVNIADGAAAPTSTGNQQ---HRRRPTPFLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEEIAFSRAAKQKTSHAHQAXXXXXXXXXXXXXXXXXXVIGRSELASGVEAAXXXXXXXXXXXXXXXXXSKSRKRSAEALGHCESGSGFGAPATRFSVRGGRVTAGG-SSKAARV 1554
            A  RQLLK+TPVFTP+QLL MEMSLL+VLNWDLRPVTVYDFVRAFC LL+ G    E SS +      XXXXXXXXX       Q++EEK++EL RLRV AEDIADLASFDV FVDFLPSTLATAAL                           +RPTSHADVLD C K  AE     DG AAA   G    GG  V+S  RVLECVQLLGSSLAER PAV +A+ SAAEG+ARYAGL   R    V                    V   K RRC TPTGVEGIMHIEMD +           HQP       + GG DG S  C        A    +      +A G +      ++Q     RRPTP +   XXXXXXXXXXXXXXXXXXX                    ++IAFSRA KQK +     XXXXXXXXXXXXXXXXXX   R+        A                    RKRSAEALGHCESGSGFGAPA R      R+ AGG + KA RV
Sbjct:  132 ASLRQLLKYTPVFTPEQLLVMEMSLLKVLNWDLRPVTVYDFVRAFCALLVQG----EASSHAA-----XXXXXXXXXXXXXXXXQAREEKKEELKRLRVWAEDIADLASFDVRFVDFLPSTLATAALXXXXXXXXXXXXXXXX--------XASVRPTSHADVLDACWKGPAEADAASDGAAAAAVDG---CGGTGVASLRRVLECVQLLGSSLAERYPAVASAARSAAEGVARYAGLPVPRGTSSVPPRXXXXXXXXXXXXXXXXXVVAVKGRRCTTPTGVEGIMHIEMDTLRGDEAGLQQQQHQP---SEHKMPGGIDGASAGCGXXXXXXXAPVGREG-----LAPGGSVHVKLEHEQPQRRHRRPTPIIXXXXXXXXXXXXXXXXXXXXXXARAGRRGSSSSFACSY----DDIAFSRATKQKRAXXXXXXXXXXXXXXXXXXXXXXXXXPRA-----TAVAAGGDVNGAVAAESAVMSCNIRKRSAEALGHCESGSGFGAPAARR-----RLVAGGVAGKAVRV 618
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11726.1534.1 vs. uniprot
Match: A0A6H5L1G7_9PHAE (CYCLIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G7_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.020e-56
Identity = 205/481 (42.62%), Postives = 235/481 (48.86%), Query Frame = 1 
Query:   82 VLNWDLRPVTVYDFVRAFCNLLLPGGVVREPSSPSGPSXXXXXXXXXXXXFGVAVTLQSKEEKEKELDRLRVGAEDIADLASFDVCFVDFLPSTLATAALLLSVSGGAASPVPVTPSSPSPSSPCGLLRPTSHADVLDTCRKFMAEDGPAAAPGGGGLGAGGDAVSSFHRVLECVQLLGSSLAERCPAVGAASMSAAEGLARYAGLDGVRERVEETLVATPPPG---PSKVVTPSPVAVAKSRRCATPTGVEGIMHIEMDAIHQQXXXXXXXXHQPCLCETEALHGGKDGGSKSCHSGDANPSAD------GPNDASVAVNIADGAAAPTSTGNQQHRRRPTPFLTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNEEIAFSRAAKQKTSHAHQAXXXXXXXXXXXXXXXXXXVIGRSELASGVEAAXXXXXXXXXXXXXXXXXSKSRKRSAEALGHCESGSGFGAPATR 1497
            VLNWDLRPVTVYDFVRAFC LL+ G          G S              V+V+LQ++EEK++EL+RL V AEDIADLASFDV FV+FLPSTLATAAL                           + PTSHA+VLD C K  AE   AA+ G    G GG  V+S  RVLECV LLGSSLAER PAV +A+ SAAEG+ARYAG   V            P G    ++  TP PV   K RRCATPTGVEGI+HIEMD +           HQP         G  DG            SA       GP  +   V++      P     Q   RRPTP +TAA                                       +++AFSRA K   + A   XXXXXXXXXXXXXXXXX      +  S +  A                    RKRSAEALGHCESGSGFGAPATR
Sbjct:  231 VLNWDLRPVTVYDFVRAFCALLVQG---------EGSSHAAAASTSGVGGASVSVSLQAREEKKEELERLGVWAEDIADLASFDVRFVNFLPSTLATAALXXXXXXXXXXXXXXXX--------XXXVPPTSHAEVLDVCWKGPAE-ADAASDGAAIDGCGGTGVASLRRVLECVLLLGSSLAERYPAVASAARSAAEGVARYAGFP-VPSGTSNVPPRREPAGRKRAAQAATP-PVVAVKGRRCATPTGVEGIVHIEMDTLRGGEAGLQQQQHQP---SEHKPRGSGDGALAXXXXXXXXSSAPVGGEGLGPGGS---VHVKQEHQLP-----QGRHRRPTPIITAAAGAANNSAAGQPQHQDHTPACAEMRGSSSSFAYS----GDDVAFSRATKHTRAAATAXXXXXXXXXXXXXXXXXXPRATAVDAGSDMNGAVAAGSSLMSCNI--------RKRSAEALGHCESGSGFGAPATR 668
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11726.1534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP7_ECTSI2.240e-7149.72Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L1G7_9PHAE3.020e-5642.62CYCLIN domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11726contigH-canaliculatus_F_contig11726:185..3053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.1
Seed ortholog evalue3.5e-59
Seed eggNOG ortholog2880.D8LGP7
Preferred nameCCNE1
KEGG koko:K06626,ko:K21777
KEGG Pathwayko04110,ko04114,ko04115,ko04151,ko04218,ko04391,ko04934,ko05161,ko05162,ko05165,ko05200,ko05203,ko05206,ko05215,ko05222,ko05226,map04110,map04114,map04115,map04151,map04218,map04391,map04934,map05161,map05162,map05165,map05200,map05203,map05206,map05215,map05222,map05226
KEGG ModuleM00692
GOsGO:0000003,GO:0000079,GO:0000082,GO:0000083,GO:0000122,GO:0000278,GO:0000280,GO:0000307,GO:0000723,GO:0000785,GO:0001541,GO:0001547,GO:0001654,GO:0001708,GO:0001709,GO:0001745,GO:0001889,GO:0001932,GO:0002009,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006275,GO:0006277,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007050,GO:0007059,GO:0007088,GO:0007096,GO:0007127,GO:0007129,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007276,GO:0007277,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007399,GO:0007400,GO:0007422,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007548,GO:0007552,GO:0007560,GO:0007584,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0008284,GO:0008356,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009605,GO:0009636,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010927,GO:0010941,GO:0010942,GO:0014016,GO:0014017,GO:0014070,GO:0014074,GO:0015630,GO:0016043,GO:0016055,GO:0016301,GO:0016310,GO:0016538,GO:0016740,GO:0016772,GO:0016773,GO:0018130,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019887,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022602,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030182,GO:0030234,GO:0030518,GO:0030521,GO:0030522,GO:0030703,GO:0030707,GO:0030855,GO:0031099,GO:0031100,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031960,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032269,GO:0032355,GO:0032501,GO:0032502,GO:0032504,GO:0032570,GO:0032870,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033043,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0035019,GO:0035107,GO:0035112,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035257,GO:0035258,GO:0035262,GO:0035295,GO:0035736,GO:0036211,GO:0040007,GO:0040026,GO:0040028,GO:0040035,GO:0042023,GO:0042127,GO:0042221,GO:0042325,GO:0042493,GO:0042592,GO:0042698,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043401,GO:0043412,GO:0043549,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044719,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0044877,GO:0045035,GO:0045132,GO:0045137,GO:0045143,GO:0045165,GO:0045471,GO:0045595,GO:0045597,GO:0045786,GO:0045787,GO:0045859,GO:0045892,GO:0045893,GO:0045930,GO:0045931,GO:0045934,GO:0045935,GO:0046425,GO:0046427,GO:0046483,GO:0046545,GO:0046660,GO:0046677,GO:0048285,GO:0048468,GO:0048477,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048580,GO:0048582,GO:0048583,GO:0048584,GO:0048589,GO:0048592,GO:0048608,GO:0048609,GO:0048646,GO:0048663,GO:0048665,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048806,GO:0048815,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0050681,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051094,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051302,GO:0051321,GO:0051338,GO:0051348,GO:0051384,GO:0051385,GO:0051412,GO:0051427,GO:0051438,GO:0051444,GO:0051445,GO:0051446,GO:0051597,GO:0051704,GO:0051716,GO:0051726,GO:0051728,GO:0051729,GO:0051782,GO:0051783,GO:0060184,GO:0060249,GO:0060255,GO:0060341,GO:0060429,GO:0060562,GO:0061008,GO:0061062,GO:0061063,GO:0061458,GO:0061695,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070887,GO:0071310,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071850,GO:0071897,GO:0071900,GO:0080090,GO:0090066,GO:0090068,GO:0090304,GO:0090596,GO:0097134,GO:0097135,GO:0097305,GO:0097472,GO:0098727,GO:0098772,GO:0098813,GO:0140013,GO:0140096,GO:0140110,GO:0198738,GO:1900087,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901654,GO:1901698,GO:1901700,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902531,GO:1902533,GO:1902554,GO:1902679,GO:1902680,GO:1902806,GO:1902808,GO:1902911,GO:1903046,GO:1903047,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903508,GO:1903827,GO:1903829,GO:1904029,GO:1904375,GO:1904666,GO:1904667,GO:1904776,GO:1904779,GO:1904781,GO:1904892,GO:1904894,GO:1905114,GO:1990234,GO:2000026,GO:2000045,GO:2000112,GO:2000113,GO:2000241,GO:2000243,GO:2001141
EggNOG free text desc.Belongs to the cyclin family
EggNOG OGsCOG5024@1,KOG0655@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncyclin D3
Ec32 orthologEc-07_005490.1
Exons4
Model size2077
Cds size1503
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11726.1534.1prot_H-canaliculatus_F_contig11726.1534.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11726 245..2539 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928867.9483113-UTR-H-canaliculatus_F_contig11726:184..2441622928867.9483113-UTR-H-canaliculatus_F_contig11726:184..244Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11726 185..244 +
1696845595.1990845-UTR-H-canaliculatus_F_contig11726:184..2441696845595.1990845-UTR-H-canaliculatus_F_contig11726:184..244Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11726 185..244 +
1622928870.599067-UTR-H-canaliculatus_F_contig11726:2539..30531622928870.599067-UTR-H-canaliculatus_F_contig11726:2539..3053Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11726 2540..3053 +
1696845595.2845268-UTR-H-canaliculatus_F_contig11726:2539..30531696845595.2845268-UTR-H-canaliculatus_F_contig11726:2539..3053Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11726 2540..3053 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928870.4614332-CDS-H-canaliculatus_F_contig11726:244..2651622928870.4614332-CDS-H-canaliculatus_F_contig11726:244..265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 245..265 +
1696845595.2091184-CDS-H-canaliculatus_F_contig11726:244..2651696845595.2091184-CDS-H-canaliculatus_F_contig11726:244..265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 245..265 +
1622928870.5578663-CDS-H-canaliculatus_F_contig11726:506..7561622928870.5578663-CDS-H-canaliculatus_F_contig11726:506..756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 507..756 +
1696845595.217025-CDS-H-canaliculatus_F_contig11726:506..7561696845595.217025-CDS-H-canaliculatus_F_contig11726:506..756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 507..756 +
1622928870.5727777-CDS-H-canaliculatus_F_contig11726:1241..17691622928870.5727777-CDS-H-canaliculatus_F_contig11726:1241..1769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 1242..1769 +
1696845595.2245874-CDS-H-canaliculatus_F_contig11726:1241..17691696845595.2245874-CDS-H-canaliculatus_F_contig11726:1241..1769Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 1242..1769 +
1622928870.5858471-CDS-H-canaliculatus_F_contig11726:1835..25391622928870.5858471-CDS-H-canaliculatus_F_contig11726:1835..2539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 1836..2539 +
1696845595.2324324-CDS-H-canaliculatus_F_contig11726:1835..25391696845595.2324324-CDS-H-canaliculatus_F_contig11726:1835..2539Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11726 1836..2539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11726.1534.1

>prot_H-canaliculatus_F_contig11726.1534.1 ID=prot_H-canaliculatus_F_contig11726.1534.1|Name=mRNA_H-canaliculatus_F_contig11726.1534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=501bp
MEMSLLEVLNWDLRPVTVYDFVRAFCNLLLPGGVVREPSSPSGPSSAAAA
TAAASGSFGVAVTLQSKEEKEKELDRLRVGAEDIADLASFDVCFVDFLPS
TLATAALLLSVSGGAASPVPVTPSSPSPSSPCGLLRPTSHADVLDTCRKF
MAEDGPAAAPGGGGLGAGGDAVSSFHRVLECVQLLGSSLAERCPAVGAAS
MSAAEGLARYAGLDGVRERVEETLVATPPPGPSKVVTPSPVAVAKSRRCA
TPTGVEGIMHIEMDAIHQQQQQQQQQQHQPCLCETEALHGGKDGGSKSCH
SGDANPSADGPNDASVAVNIADGAAAPTSTGNQQHRRRPTPFLTAAATGK
GSTAAVERQQQQQQQQRQRQYQSTRARSESFTYTNEEIAFSRAAKQKTSH
AHQAAAAMAAVAAAGGGGGGGGVIGRSELASGVEAAAAAAAAASVAAAAA
VMASKSRKRSAEALGHCESGSGFGAPATRFSVRGGRVTAGGSSKAARVLC
*
back to top

mRNA from alignment at H-canaliculatus_F_contig11726:185..3053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11726.1534.1 ID=mRNA_H-canaliculatus_F_contig11726.1534.1|Name=mRNA_H-canaliculatus_F_contig11726.1534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2869bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11726:185..3053+ (Hapterophycus canaliculatus Oshoro5f female)
GCTCGGCAGCGGCAACTCCTCAAGTTCACCCCGGTGTTCACGCCCGACCA
GCTGCTGCACATGGAGATGTCTCTGCTCGAGGTGCGTTCACGGAGGCGGC
GGTGCAGTTCTAAGTAGGGTTGCGATAGCTTAGTCTTGGCCAGCAAAATC
TGGACCCTCGCTGGAGAGTGCTGCAGCCGGGCGTCGCGACGAGCGCGGCC
GCCCTCTGCACCTCGGGCCGAATGAACCCTATATTTCACCTTCGTAAGTT
CGCACGGTCCATCACTGGGAGCGCCATCCCCTCACTAGGTTTTGCCGTAT
TCCCACCACCCCCGATCCGAAGGTGCTCAACTGGGACCTCCGCCCGGTGA
CGGTCTACGACTTCGTACGAGCGTTCTGCAATCTCCTTCTGCCGGGGGGG
GTGGTGCGGGAGCCCTCCAGCCCATCAGGCCCGTCCAGCGCCGCCGCCGC
CACCGCCGCTGCATCGGGGTCCTTCGGCGTCGCCGTAACGCTGCAATCCA
AGGAGGAGAAGGAGAAGGAGCTCGATCGCCTGCGCGTAGGCGCGGAGGAT
ATCGCTGATCTGGCCTCGTTCGGTGGGTTTAAGATCTGTGTTCCCCAGCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCTCTCCCCCCCCCC
CCCGCCGCGCTGCTCGCCTGCCTCCTCACCCNNNNNNNNNNGTTGGGTTT
AAGATCTTTTTTCCCCGGCCCCCCCCCCCCCCTGACGCTGTACAGTTTTG
TTCTTTTCCCCACGGTTATGGTCTAGATGCCGTTTCTCTCTACACGTAGA
TTGCCGCTGGGTGGAAATCTGTCTTTTCGTATCTTGCGTAATTTCGTGAT
TAGCACCCCACCCCGGTTCCCTTGAAAGGAGTCGCAATCGGAGCTTAGTT
TTTGGGAGCCACGAAGGAAGACGCGAGGGAGGCTCCTTGCTGCGGTCAAC
GCGTTTGCTGGGTTGCGACGCCCTCACCCCCGCTGCCGCCGTCGCCCCCT
TCCGCTCCCCCCCCCCCCCCCCCACCCCCCGCCTCCGCTTCTGCTGGCCC
CCTTCAGACGTCTGCTTCGTCGACTTCCTTCCTTCGACCCTGGCCACCGC
CGCCCTCCTCCTCTCCGTCTCCGGAGGAGCAGCGTCGCCGGTGCCGGTCA
CCCCGTCCTCACCCTCTCCCTCCTCGCCTTGCGGCCTCCTGCGGCCGACC
TCCCACGCCGACGTACTGGACACGTGCCGGAAGTTCATGGCCGAGGATGG
ACCCGCCGCTGCCCCCGGTGGCGGAGGTCTAGGCGCGGGGGGTGACGCAG
TTTCCTCTTTCCACCGCGTGCTGGAGTGCGTCCAGCTCCTGGGCTCGTCT
CTCGCAGAGCGATGCCCGGCCGTCGGGGCGGCTTCGATGTCGGCCGCGGA
GGGCCTCGCGCGGTACGCCGGGCTGGACGGTGTGAGGGAGAGAGTGGAGG
AGACCCTGGTGGCGACGCCGCCCCCCGGACCGTCGAAGGTGGTCACGCCC
TCCCCCGTCGCCGTCGCCAAGAGCCGTCGCTGCGCCACGCCGACCGGGGT
CGAGGGGATCATGCACATCGAGATGGACGCCATTCGTAGCGCGAGCGGTG
GTGGCAGCGGCGGCGGTGACGCCACCGACGGGGTCGAGCAGCAGAAACAA
GACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCCATGCCTCTG
CGAGACGGAAGCGCTTCACGGCGGCAAGGACGGCGGCAGCAAGAGCTGTC
ACAGCGGCGATGCCAACCCTAGCGCGGACGGCCCGAACGATGCGTCCGTC
GCGGTCAACATCGCGGACGGCGCGGCAGCGCCCACCTCGACTGGGAACCA
GCAGCACCGCCGGCGACCAACCCCGTTCTTGACCGCCGCCGCCACAGGCA
AAGGCAGCACTGCGGCAGTGGAGAGGCAGCAGCAGCAGCAGCAGCAGCAG
CGGCAGCGGCAGTATCAGTCGACGCGCGCCCGGAGCGAGTCGTTCACGTA
CACCAACGAAGAGATTGCTTTCTCCAGGGCGGCGAAACAGAAGACCTCTC
ATGCCCACCAGGCGGCGGCTGCGATGGCGGCGGTGGCAGCGGCCGGTGGC
GGCGGCGGCGGCGGCGGCGTTATCGGCCGGTCCGAGCTCGCGTCAGGCGT
GGAGGCGGCGGCGGCGGCGGCGGCGGCGGCATCGGTAGCGGCTGCGGCGG
CGGTGATGGCGAGCAAGAGCAGGAAGAGGTCGGCCGAGGCCCTTGGCCAC
TGCGAGAGTGGGTCTGGGTTCGGGGCTCCCGCGACTCGCTTCAGCGTCCG
CGGCGGCAGAGTGACGGCGGGGGGCAGCAGCAAGGCCGCGAGGGTACTGT
GTTGAACCTCCGTGGGGACCCTGTGGTGGTCCTGCTGCTTGACCCGTGGC
TCGCATTGGCCGTTGCTGGCCCCGGAGCAACCACTGCCGACGCCGATGCC
GTCAGCCTCGACTCACTCGCGTCGGAGCAGCGGCGGAGTGAGGATGGCGG
CGGCGGCGTTGCTGGGACAGAGAGATCCGCCCCCCTCTTGTCACCGCCGC
TGGTAATGGGTGGTGATGGATGGTGGAAATTCGGGAGACGACGGAGGGCG
AAGGTGCTCGTCGAGGCGGTGGTTTCGGCCATGCAGAAGGCGGAAGGTTT
GTCGCGGGTCGCCCGTCGCCCACGCAAATCGCCGACTTCCTTCAGCGGAG
TGGCGGGTTGGTGGTTGAACCACTCCGATGTACCGGCGATTCACAGGGAC
TCCGCAAGCGGTGCAATCAACCGAGCACATTGAAAAATGATGGCTCGTGC
GGTTCGTTAATGGAGAACATACCCCGTCTTTCATCTCGCGGACGGCCCGC
CGGTGGAGGAAAGGGTCGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11726:185..3053+

>mRNA_H-canaliculatus_F_contig11726.1534.1 ID=mRNA_H-canaliculatus_F_contig11726.1534.1|Name=mRNA_H-canaliculatus_F_contig11726.1534.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3006bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11726:185..3053+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGATGTCTCTGCTCGAGATGGAGATGTCTCTGCTCGAGGTGCTCAA
CTGGGACCTCCGCCCGGTGACGGTCTACGACTTCGTACGAGCGTTCTGCA
ATCTCCTTCTGCCGGGGGGGGTGGTGCGGGAGCCCTCCAGCCCATCAGGC
CCGTCCAGCGCCGCCGCCGCCACCGCCGCTGCATCGGGGTCCTTCGGCGT
CGCCGTAACGCTGCAATCCAAGGAGGAGAAGGAGAAGGAGCTCGATCGCC
TGCGCGTAGGCGCGGAGGATATCGCTGATCTGGCCTCGTTCGGTGCTCAA
CTGGGACCTCCGCCCGGTGACGGTCTACGACTTCGTACGAGCGTTCTGCA
ATCTCCTTCTGCCGGGGGGGGTGGTGCGGGAGCCCTCCAGCCCATCAGGC
CCGTCCAGCGCCGCCGCCGCCACCGCCGCTGCATCGGGGTCCTTCGGCGT
CGCCGTAACGCTGCAATCCAAGGAGGAGAAGGAGAAGGAGCTCGATCGCC
TGCGCGTAGGCGCGGAGGATATCGCTGATCTGGCCTCGTTCGACGTCTGC
TTCGTCGACTTCCTTCCTTCGACCCTGGCCACCGCCGCCCTCCTCCTCTC
CGTCTCCGGAGGAGCAGCGTCGCCGGTGCCGGTCACCCCGTCCTCACCCT
CTCCCTCCTCGCCTTGCGGCCTCCTGCGGCCGACCTCCCACGCCGACGTA
CTGGACACGTGCCGGAAGTTCATGGCCGAGGATGGACCCGCCGCTGCCCC
CGGTGGCGGAGGTCTAGGCGCGGGGGGTGACGCAGTTTCCTCTTTCCACC
GCGTGCTGGAGTGCGTCCAGCTCCTGGGCTCGTCTCTCGCAGAGCGATGC
CCGGCCGTCGGGGCGGCTTCGATGTCGGCCGCGGAGGGCCTCGCGCGGTA
CGCCGGGCTGGACGGTGTGAGGGAGAGAGTGGAGGAGACCCTGGTGGCGA
CGCCGCCCCCCGGACCGTCGAAGGTGGTCACGCCCTCCCCCGTCGCCGTC
GCCAAGAGCCGTCGCTGCGCCACGCCGACCGGGGTCGAGGGGATCATGCA
CATCGAGATGGACGCCATTCACGTCTGCTTCGTCGACTTCCTTCCTTCGA
CCCTGGCCACCGCCGCCCTCCTCCTCTCCGTCTCCGGAGGAGCAGCGTCG
CCGGTGCCGGTCACCCCGTCCTCACCCTCTCCCTCCTCGCCTTGCGGCCT
CCTGCGGCCGACCTCCCACGCCGACGTACTGGACACGTGCCGGAAGTTCA
TGGCCGAGGATGGACCCGCCGCTGCCCCCGGTGGCGGAGGTCTAGGCGCG
GGGGGTGACGCAGTTTCCTCTTTCCACCGCGTGCTGGAGTGCGTCCAGCT
CCTGGGCTCGTCTCTCGCAGAGCGATGCCCGGCCGTCGGGGCGGCTTCGA
TGTCGGCCGCGGAGGGCCTCGCGCGGTACGCCGGGCTGGACGGTGTGAGG
GAGAGAGTGGAGGAGACCCTGGTGGCGACGCCGCCCCCCGGACCGTCGAA
GGTGGTCACGCCCTCCCCCGTCGCCGTCGCCAAGAGCCGTCGCTGCGCCA
CGCCGACCGGGGTCGAGGGGATCATGCACATCGAGATGGACGCCATTCAC
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCCATGCCTCTGCGA
GACGGAAGCGCTTCACGGCGGCAAGGACGGCGGCAGCAAGAGCTGTCACA
GCGGCGATGCCAACCCTAGCGCGGACGGCCCGAACGATGCGTCCGTCGCG
GTCAACATCGCGGACGGCGCGGCAGCGCCCACCTCGACTGGGAACCAGCA
GCACCGCCGGCGACCAACCCCGTTCTTGACCGCCGCCGCCACAGGCAAAG
GCAGCACTGCGGCAGTGGAGAGGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGCGGCAGTATCAGTCGACGCGCGCCCGGAGCGAGTCGTTCACGTACAC
CAACGAAGAGATTGCTTTCTCCAGGGCGGCGAAACAGAAGACCTCTCATG
CCCACCAGGCGGCGGCTGCGATGGCGGCGGTGGCAGCGGCCGGTGGCGGC
GGCGGCGGCGGCGGCGTTATCGGCCGGTCCGAGCTCGCGTCAGGCGTGGA
GGCGGCGGCGGCGGCGGCGGCGGCGGCATCGGTAGCGGCTGCGGCGGCGG
TGATGGCGAGCAAGAGCAGGAAGAGGTCGGCCGAGGCCCTTGGCCACTGC
GAGAGTGGGTCTGGGTTCGGGGCTCCCGCGACTCGCTTCAGCGTCCGCGG
CGGCAGAGTGACGGCGGGGGGCAGCAGCAAGGCCGCGAGGGTACTGTGTT
GAACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCCATGCCTCT
GCGAGACGGAAGCGCTTCACGGCGGCAAGGACGGCGGCAGCAAGAGCTGT
CACAGCGGCGATGCCAACCCTAGCGCGGACGGCCCGAACGATGCGTCCGT
CGCGGTCAACATCGCGGACGGCGCGGCAGCGCCCACCTCGACTGGGAACC
AGCAGCACCGCCGGCGACCAACCCCGTTCTTGACCGCCGCCGCCACAGGC
AAAGGCAGCACTGCGGCAGTGGAGAGGCAGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCGGCAGTATCAGTCGACGCGCGCCCGGAGCGAGTCGTTCACGT
ACACCAACGAAGAGATTGCTTTCTCCAGGGCGGCGAAACAGAAGACCTCT
CATGCCCACCAGGCGGCGGCTGCGATGGCGGCGGTGGCAGCGGCCGGTGG
CGGCGGCGGCGGCGGCGGCGTTATCGGCCGGTCCGAGCTCGCGTCAGGCG
TGGAGGCGGCGGCGGCGGCGGCGGCGGCGGCATCGGTAGCGGCTGCGGCG
GCGGTGATGGCGAGCAAGAGCAGGAAGAGGTCGGCCGAGGCCCTTGGCCA
CTGCGAGAGTGGGTCTGGGTTCGGGGCTCCCGCGACTCGCTTCAGCGTCC
GCGGCGGCAGAGTGACGGCGGGGGGCAGCAGCAAGGCCGCGAGGGTACTG
TGTTGA
back to top