mRNA_H-canaliculatus_F_contig11713.1527.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11713.1527.1
Unique NamemRNA_H-canaliculatus_F_contig11713.1527.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A6H5K6A8_9PHAE (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6A8_9PHAE)

HSP 1 Score: 384 bits (985), Expect = 2.750e-131
Identity = 197/286 (68.88%), Postives = 226/286 (79.02%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQH---EGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGD-DAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKK-TMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGMEWVMPPETPTNHSA 843
            +VFLIDATP+LR QLWYIQH   +G    PL+LGGILLTHAH GHYTGLLQLGKEEADMR VPVFCTPSMASFL +NQPW QLT+RGNI I+EL ++ T    DA PV LT SLS  PV VPHRAELSDTVAYVV+++ R   +  +  + +   DL  P  +SS +  TM  LYCPDTD WSDW RSI SWC+EVDVALLDATF+ KGELKGRDMSEVSHPIA +TMA+LAGC+AEVV IHLNHTNPL+TADSPERA+A+AAG+KVG+FGMEW    +TP    A
Sbjct:   35 KVFLIDATPDLREQLWYIQHPKRKGDSGRPLELGGILLTHAHIGHYTGLLQLGKEEADMRGVPVFCTPSMASFLRSNQPWRQLTDRGNIAIQELDMDATDNSKDAVPVQLTRSLSVLPVPVPHRAELSDTVAYVVSVASRAVDASDTAVSHAPKLDLGPPAEVSSGENDTMKLLYCPDTDGWSDWKRSISSWCNEVDVALLDATFHGKGELKGRDMSEVSHPIATETMAQLAGCKAEVVLIHLNHTNPLLTADSPERAQAVAAGYKVGSFGMEWAPTLKTPAGSRA 320          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: D7FQF9_ECTSI (Coenzyme PQQ synthesis protein B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQF9_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 3.110e-99
Identity = 151/228 (66.23%), Postives = 179/228 (78.51%), Query Frame = 1
Query:  166 MRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGD-DAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKK-TMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGMEWVMPPETPTNHSA 843
            MR VPVFCTPSMASFL +NQPW QLT+RGNI I+EL ++ T    DA PV LT SLS  PV VPHRAELSDT+AYVV+++ R   +  +  + ++  DL  P  +SS +  TM  LYCPDTD WSDW R+I SWC+EVDVALLDATF+ KGELKGRDMSEVSHPIA +TMA+LAGC+AEVV IHLNHTNPL+TADSPERA+A+AAG+KVG+FGMEW    ETP +  A
Sbjct:    1 MRGVPVFCTPSMASFLRSNQPWRQLTDRGNITIQELDIDATDNSKDAVPVQLTRSLSVLPVPVPHRAELSDTIAYVVSVASRAVDASGTAVSHTSKLDLGPPAEVSSGENDTMKLLYCPDTDGWSDWKRNISSWCNEVDVALLDATFHGKGELKGRDMSEVSHPIATETMAQLAGCKAEVVLIHLNHTNPLLTADSPERAQAVAAGYKVGSFGMEWAPTLETPADSRA 228          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A835Z5U1_9STRA (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U1_9STRA)

HSP 1 Score: 226 bits (575), Expect = 8.590e-69
Identity = 125/276 (45.29%), Postives = 159/276 (57.61%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQ-----HEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSD-WTRSIKSWCSEVDVALLDATFYSKGELK-GRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGMEW 807
            + FL+DATP++ SQLW +Q     ++G   V   LGGILLTHAH GHY+GLLQLGKE      VPVFCT SMA+FL  N PW+ L E  +IVI EL   +          L   L   P+SVPHR E+SDTVA +                              SC      LYCPDT+ W + W + I++WC EV+VA++D TFYS  EL  GR ++++ HP+  DT+A L+GC A+VVF HLNHTNP+ TA S +R     AG  V  FGM+W
Sbjct:   61 KAFLVDATPDIGSQLWELQQAIPANDGPGNV---LGGILLTHAHMGHYSGLLQLGKEALGAAQVPVFCTASMAAFLHENLPWSLLVEGNSIVITELTPGSAY-------RLCTGLCVTPISVPHRDEISDTVAMLF-----------------------------SCGDQSKLLYCPDTNGWGEGWGKGIRAWCDEVEVAVVDGTFYSADELPAGRSIADIPHPLIPDTVARLSGCSAQVVFTHLNHTNPVATAASEQRRSVTDAGMSVAEFGMQW 297          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A524ARI4_9CHLR (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Anaerolineales bacterium TaxID=2073117 RepID=A0A524ARI4_9CHLR)

HSP 1 Score: 201 bits (510), Expect = 6.540e-60
Identity = 121/271 (44.65%), Postives = 148/271 (54.61%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGMEWVM 813
            Q +LIDATP+ R QL +  H      PL   GI+LTHAH GHYTGL+ LG+E    RD+PV+ T  +ASFL ++ PW+QL   GNI +R L    T G D     L+P L   PV VPHR ELSDT+A VV                      H P             YCPD D W  W  +++ + + +DVALLDATF+S  EL GRD+SE+ HP A DT   LA    +V  IHLNHTNPL+ A  PER    A    VG FG  WV+
Sbjct:   51 QSWLIDATPDFREQL-HALHNLAPDCPL--AGIVLTHAHMGHYTGLIHLGREAMCTRDLPVYATLRLASFLHDSAPWSQLVALGNIELRLL----TPGTDT---QLSPDLHLTPVLVPHRDELSDTLALVV----------------------HGP--------ARRLFYCPDIDAWDKWEHNLRDFVAGMDVALLDATFFSHDELPGRDLSEIPHPSAIDTAERLAKVDCDVRLIHLNHTNPLL-APGPERDWLAAQEISVGAFGARWVL 280          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A4R6Y2H1_9GAMM (Pyrroloquinoline quinone biosynthesis protein B n=2 Tax=Marinicella litoralis TaxID=644220 RepID=A0A4R6Y2H1_9GAMM)

HSP 1 Score: 192 bits (488), Expect = 4.990e-56
Identity = 106/272 (38.97%), Postives = 150/272 (55.15%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGC----RAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGME 804
            Q +L++ATP++R Q+  + H+        L GI LTH H GHYTGL+ +G E A M++ PV+  P    +L NN PW+QL +  NIV+++L        D   V L P+LS KP+ VPHR E ++TVAYV+       G   SV                        L+ PD D+W  W + IK+  S+VD A LDATF++ GE+  RDM+E+ HP  ++++  L       +A+V+FIH NHTNPL+  DS    +  A GFKV   GM+
Sbjct:   92 QKYLLEATPDIREQMHQL-HQVAPDGLYNLAGIFLTHGHMGHYTGLMHMGHEAAGMKNTPVYVMPRFKKYLQNNGPWSQLVDYKNIVLQDL-------HDQSTVQLNPNLSIKPMLVPHRDEYTETVAYVIK------GPRKSV------------------------LFIPDIDKWQKWNKDIKAEISQVDYAFLDATFFANGEIPNRDMAEIPHPFVEESLQLLKDLSPKDKAKVIFIHFNHTNPLLNHDSEASEQVKAHGFKVAYRGMK 325          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: UPI002014F72B (MBL fold metallo-hydrolase n=2 Tax=Shewanella TaxID=22 RepID=UPI002014F72B)

HSP 1 Score: 189 bits (479), Expect = 2.960e-55
Identity = 106/269 (39.41%), Postives = 143/269 (53.16%), Query Frame = 1
Query:    7 FLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGCRAE----VVFIHLNHTNPLITADSPERARAIAAGFKVGTFGM 801
            +L +ATP+L  QL+ +Q E       +L G+ LTHAH GHYTGL+  G+E A  + +PV+  P M SFL NN PW+QL +  NI ++EL     V        +  ++   PV VPHR E S+TV Y++                                KT T L+ PD D+W  W  +I+    +VD ALLDATFYS  ELKGR M+EV HP+  ++M        E    V+FIHLNHTNPL+ + SPE      AGF+V + G+
Sbjct:   48 YLFEATPDLPQQLYLLQQEWSNP-DYQLQGVFLTHAHMGHYTGLMHFGRESASTKQLPVYAMPQMRSFLENNGPWSQLVKLNNIELKELQNKREV--------VLGNVRVTPVLVPHRDEFSETVGYLIK------------------------------GKTKTALFIPDIDKWEKWDTAIEELIPQVDYALLDATFYSADELKGRTMAEVPHPLVVESMNRFRELPPEQKRKVIFIHLNHTNPLLDSSSPESLAVTDAGFRVASEGL 277          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A2V7XRA8_9BACT (Pyrroloquinoline quinone biosynthesis protein PqqB n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V7XRA8_9BACT)

HSP 1 Score: 190 bits (482), Expect = 3.160e-55
Identity = 118/275 (42.91%), Postives = 144/275 (52.36%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQHEGGRTVPLK-LGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGMEWVMPPE 822
            Q FLIDATP++ SQL  +        P + + GILLTHAH GHYTGL+  G+E      VPV+ T  MA+FL  N PW+QL   G I +RE+       +      LTPSL+F PV VPHR ELSDTV YVV    RG                           T   LY PD D+W  W R ++   + V  ALLD TF+S  EL GR + EV HP+  +T A L    + VVFIHLNHTNPL+  D   R      GF V T G+  V+P E
Sbjct:   83 QRFLIDATPDMASQLESLNTGRALADPRRPVDGILLTHAHIGHYTGLMYFGREALGAHAVPVYTTTHMAAFLRANGPWSQLVALGQIELREI-------EPGRETVLTPSLAFTPVRVPHRDELSDTVGYVV----RG--------------------------PTGALLYVPDIDKWEKWDRRVEGEVARVGTALLDGTFFSADELPGRSIDEVPHPLVSETAARLGELSSRVVFIHLNHTNPLLWDDRLRRDLR-GRGFTVATDGL--VIPLE 317          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A1Q3T670_9SPHI (Pyrroloquinoline quinone biosynthesis protein PqqB n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1Q3T670_9SPHI)

HSP 1 Score: 188 bits (477), Expect = 2.030e-54
Identity = 109/271 (40.22%), Postives = 141/271 (52.03%), Query Frame = 1
Query:    1 QVFLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGC----RAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGM 801
            Q +L +ATP++ +Q   +Q            GI  THAH GHY GLLQLG+E    R VPV+  P M SFL  N PW+QL E  NI +  L  ++++        L+PSL  KP+ VPHR E S+TV +++                            S  KK    L+ PD D+W  W R+I    S+VD+A LD TFY  GEL GRDM EV HP  +++M   AG     R+++VFIH NHTNPL    S E+    A GFKV   GM
Sbjct:   88 QYWLFEATPDITTQFHSVQQYLSSQAGHIPAGIFTTHAHIGHYAGLLQLGREAMGARSVPVWTMPRMDSFLRYNAPWSQLVELKNIQLNALKEDSSI-------TLSPSLKVKPLVVPHRDEFSETVGFIIE---------------------------SVGKK---ILFIPDIDKWEKWDRNINEEVSKVDIAFLDGTFYKNGELPGRDMKEVPHPFVEESMQLFAGLPDTVRSKIVFIHFNHTNPLRKKGSSEKEEVSAKGFKVAEEGM 321          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A0R2SXS5_9GAMM (Pyrroloquinoline quinone biosynthesis protein PqqB n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A0R2SXS5_9GAMM)

HSP 1 Score: 186 bits (473), Expect = 6.460e-54
Identity = 105/269 (39.03%), Postives = 145/269 (53.90%), Query Frame = 1
Query:    7 FLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGC----RAEVVFIHLNHTNPLITADSPERARAIAAGFKVGTFGM 801
            +L +ATP+L  QL+ +Q E   T    L G+ LTHAH GHY GL+  G+E  + + +PV+  P M+++L NN PW+QL    N+ +  LG N        PVALT +LS  P+ VPHR E S+TV Y +         P+  A                       L+ PD ++W+DW   I +    VD ALLDATF++ GEL  RDMS++ HP   ++MA  +      R +V FIH NHTNPL+   SPE  R I AG+ + T G+
Sbjct:   83 YLFEATPHLPEQLYALQKEAP-TTRTGLDGVFLTHAHIGHYAGLMHFGREAMNAQGLPVYAMPVMSAYLRNNGPWSQLVALNNVALMPLGDNR-------PVALTTALSVTPMLVPHRDEFSETVGYRIE-------GPNKSA-----------------------LFIPDINKWADWDTDIAALLKTVDYALLDATFFADGELGNRDMSQIPHPFVAESMALFSVLPTEERDKVWFIHFNHTNPLLDLKSPESLRVIGAGYHIATEGL 313          
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Match: A0A520V9T6_9FLAO (MBL fold metallo-hydrolase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A520V9T6_9FLAO)

HSP 1 Score: 186 bits (473), Expect = 7.610e-54
Identity = 104/265 (39.25%), Postives = 146/265 (55.09%), Query Frame = 1
Query:    7 FLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLGKEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDDAFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTTSDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATFYSKGELKGRDMSEVSHPIAQDTMAELAGC----RAEVVFIHLNHTNPLITADSPERARAIAAGFKVG 789
            +L DATP++ +QL+ +++    +    + GI LTHAH GHYTGL+ LGKE A+ +++PVF  P M+SF+ NN PW+QL  + NI ++ L  N  +       AL+PSL   P  VPHR E S+TV Y +                        PD     KK    L+ PD D+W+ W   + +   +VD A LDATFYS  EL  RDMS++ HP   +T+  L       RA+V+F H NHTNPL+ + S    + +A GFK+G
Sbjct:   88 YLFDATPDIGAQLYALKNASKISPSSIVDGIFLTHAHIGHYTGLMYLGKEAANTKNIPVFAMPKMSSFISNNGPWSQLVAQRNIALQPLVANQAI-------ALSPSLHVTPFLVPHRDEYSETVGYFIE----------------------GPD-----KKA---LFIPDIDKWNRWELDLATELQQVDYAFLDATFYSAEELGNRDMSQIPHPSVLETIQTLKDFSRAQRAKVIFTHFNHTNPLLDSTSEATKKVLALGFKIG 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11713.1527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6A8_9PHAE2.750e-13168.88Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
D7FQF9_ECTSI3.110e-9966.23Coenzyme PQQ synthesis protein B n=1 Tax=Ectocarpu... [more]
A0A835Z5U1_9STRA8.590e-6945.29Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A524ARI4_9CHLR6.540e-6044.65Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A4R6Y2H1_9GAMM4.990e-5638.97Pyrroloquinoline quinone biosynthesis protein B n=... [more]
UPI002014F72B2.960e-5539.41MBL fold metallo-hydrolase n=2 Tax=Shewanella TaxI... [more]
A0A2V7XRA8_9BACT3.160e-5542.91Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A1Q3T670_9SPHI2.030e-5440.22Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A0R2SXS5_9GAMM6.460e-5439.03Pyrroloquinoline quinone biosynthesis protein PqqB... [more]
A0A520V9T6_9FLAO7.610e-5439.25MBL fold metallo-hydrolase n=1 Tax=Flavobacteriale... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11713contigH-canaliculatus_F_contig11713:156..2204 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score187.6
Seed ortholog evalue8.1e-45
Seed eggNOG ortholog1122176.KB903531_gene2817
KEGG rclassRC00296
KEGG koko:K06136,ko:K06167
KEGG ReactionR10205
KEGG Pathwayko00440,map00440
EggNOG free text desc.Beta-lactamase superfamily domain
EggNOG OGs1IWBX@117747,4NGB4@976,COG1235@1,COG1235@2
EC3.1.4.55
COG Functional cat.S
Best tax levelSphingobacteriia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size846
Cds size846
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11713.1527.1prot_H-canaliculatus_F_contig11713.1527.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11713 156..2204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.5731256-CDS-H-canaliculatus_F_contig11713:155..3351622928866.5731256-CDS-H-canaliculatus_F_contig11713:155..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 156..335 +
1696845594.9209023-CDS-H-canaliculatus_F_contig11713:155..3351696845594.9209023-CDS-H-canaliculatus_F_contig11713:155..335Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 156..335 +
1622928867.2985728-CDS-H-canaliculatus_F_contig11713:540..9991622928867.2985728-CDS-H-canaliculatus_F_contig11713:540..999Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 541..999 +
1696845594.9329433-CDS-H-canaliculatus_F_contig11713:540..9991696845594.9329433-CDS-H-canaliculatus_F_contig11713:540..999Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 541..999 +
1622928867.526302-CDS-H-canaliculatus_F_contig11713:1553..16971622928867.526302-CDS-H-canaliculatus_F_contig11713:1553..1697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 1554..1697 +
1696845594.9433272-CDS-H-canaliculatus_F_contig11713:1553..16971696845594.9433272-CDS-H-canaliculatus_F_contig11713:1553..1697Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 1554..1697 +
1622928867.5451992-CDS-H-canaliculatus_F_contig11713:2141..22041622928867.5451992-CDS-H-canaliculatus_F_contig11713:2141..2204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 2142..2204 +
1696845594.953755-CDS-H-canaliculatus_F_contig11713:2141..22041696845594.953755-CDS-H-canaliculatus_F_contig11713:2141..2204Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11713 2142..2204 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11713.1527.1

>prot_H-canaliculatus_F_contig11713.1527.1 ID=prot_H-canaliculatus_F_contig11713.1527.1|Name=mRNA_H-canaliculatus_F_contig11713.1527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=282bp
QVFLIDATPNLRSQLWYIQHEGGRTVPLKLGGILLTHAHTGHYTGLLQLG
KEEADMRDVPVFCTPSMASFLLNNQPWAQLTERGNIVIRELGVNTTVGDD
AFPVALTPSLSFKPVSVPHRAELSDTVAYVVNLSVRGGGSPSSVAAISTT
SDLHAPDTMSSCKKTMTFLYCPDTDRWSDWTRSIKSWCSEVDVALLDATF
YSKGELKGRDMSEVSHPIAQDTMAELAGCRAEVVFIHLNHTNPLITADSP
ERARAIAAGFKVGTFGMEWVMPPETPTNHSA*
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mRNA from alignment at H-canaliculatus_F_contig11713:156..2204+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11713.1527.1 ID=mRNA_H-canaliculatus_F_contig11713.1527.1|Name=mRNA_H-canaliculatus_F_contig11713.1527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2049bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11713:156..2204+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGTTTCTTATCGATGCCACTCCGAACCTCCGCAGTCAACTGTGGTA CATCCAGCACGAGGGAGGTCGTACCGTTCCCTTGAAGCTTGGCGGTATAC TTTTGACCCACGCACACACCGGTCACTACACTGGATTGCTTCAGCTTGGC AAAGAGGAAGCAGACATGAGAGATGTACCGGTGAGACGCTTCAACCTTGA ATACGAGGCCGGAAACAGCCCCCCCTACGGAGTGTTCGGCTGCTGTTTCC AGCGAAATCGAGCTACGCGGTCTCTCGTCTCGCTGCTCACAGGAAGATGA AATATATTTCATCACAGACCGTGTTCGCTGCCCAATGCCCGATCGCAAAC TGCACACGCGATCGATGCCTCGTGCGAGAGGGCAGGTTTTCTGCACTCCA AGCATGGCATCCTTTCTGCTAAACAACCAACCGTGGGCCCAGCTCACGGA GCGAGGCAACATTGTGATCCGAGAGTTGGGCGTGAATACGACCGTTGGCG ACGACGCGTTCCCTGTTGCGCTTACGCCTTCGCTATCCTTCAAGCCCGTG TCCGTTCCTCACCGCGCTGAGCTGTCGGATACGGTAGCGTATGTGGTAAA TTTGTCAGTTCGAGGAGGTGGGAGCCCCTCGAGTGTGGCGGCTATTTCCA CAACGTCTGATCTTCATGCCCCCGACACGATGTCGAGTTGCAAGAAGACG ATGACGTTTTTGTACTGCCCGGATACTGATCGCTGGTCGGACTGGACGCG AAGCATCAAGTCCTGGTGCTCCGAAGTAGATGTCGCATTGTTGGACGCCA CATTCTATTCCAAAGGAGAGCTCAAGGGTCGAGATATGAGCGAGGTGAGG GGACCCATTTTGTACACCTTGTTCATCTGGCTGGTTTCAGCCACCTTCTT GCATCATGTTTTCCTCATGTGTTCCGATTGATTGCTGACTTCGGGGTTGC TTGCCGGCAACCGGGACTTCGAACCTGTTAAGCGGAAGGGAAAAACGTTT TCGTGTATCCACACGACATCTGCCGGCTACAATTGTATTGCGTCCAAATT GGAAATGGGATGTCCCACGGTGATCATTGGGAACACACAGCTATACAGTC TCCATCCTCGCTCGCAGGTTTTAGGTGGCAGAATGTGGTGCACTCTCGGA AGAGATGTACCGCTCACCCGATGTGAGGGAGTTCGGAAGTTGCTTTTGTC GCCCTTTAAATAAAGTCGCTTCCGTCAGCAACGAGATTATTTGTGAAAAC AGAATATGTTCGGCAGCAAGAATGACGGGCCTTGAACGTCACGAACCCGG AAATCAGTCATGGTTACTGGGCCTAGCGCAGAAGCTTACGGGTGTTTTTA AAGAAAACATATTGGTGTTTATTTCATCTTATCCCCCTTGTCTTCCAGGT ATCTCATCCCATCGCGCAGGACACCATGGCCGAATTGGCCGGCTGCAGGG CTGAGGTGGTATTCATACACCTCAACCATACAAACCCGCTTATCACCGCG GATTCTCCAGAGCGAGCCCGAGCCATTGCTGCGGGCTTCAAGGTAAGCCC GATATGTTCTACCAAGGAAATTTCTGCCACAAGTCGTTATGAGAACATTC ACCCGCTCTTCTGCAGTGTGCCGTAAGAATCAGGGTCTCTGCACAGGGGT GCCGTACTTCTTAACCCGGCCTGATATCTCCACAACGGAAGCTGCCACTT GGAAGATACCGGAGCTTGCCGTACATGCATTTTTCAAAAGCAGCAAATAG CAGCATCCTCACGGTTTTGGAGATATTGGGCCGGTAAAATCGAACCTCCT GCACCCCTGTGCCAAAGACTCGATCCTGTCCTCGTATATCATCCGTCCTA TCGCGGGATAGAATCGCATTGTGCGGTAGGGAGGCACTTGGCGGATTTGG TTTGACAAGGCCTTTGATCCTCGCTGCAGCCCCCAGTCACTGAACACCGG ATTCTCAAAAGTATCGTTATGTGTCCTACCGCCCAGGTGGGTACGTTCGG TATGGAATGGGTGATGCCCCCGGAGACGCCTACCAACCATAGCGCCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11713:156..2204+

>mRNA_H-canaliculatus_F_contig11713.1527.1 ID=mRNA_H-canaliculatus_F_contig11713.1527.1|Name=mRNA_H-canaliculatus_F_contig11713.1527.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1692bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11713:156..2204+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTGTTTCTTATCGATGCCACTCCGAACCTCCGCAGTCAACTGTGGTA
CATCCAGCACGAGGGAGGTCGTACCGTTCCCTTGAAGCTTGGCGGTATAC
TTTTGACCCACGCACACACCGGTCACTACACTGGATTGCTTCAGCTTGGC
AAAGAGGAAGCAGACATGAGAGATGTACCGCAGGTGTTTCTTATCGATGC
CACTCCGAACCTCCGCAGTCAACTGTGGTACATCCAGCACGAGGGAGGTC
GTACCGTTCCCTTGAAGCTTGGCGGTATACTTTTGACCCACGCACACACC
GGTCACTACACTGGATTGCTTCAGCTTGGCAAAGAGGAAGCAGACATGAG
AGATGTACCGGTTTTCTGCACTCCAAGCATGGCATCCTTTCTGCTAAACA
ACCAACCGTGGGCCCAGCTCACGGAGCGAGGCAACATTGTGATCCGAGAG
TTGGGCGTGAATACGACCGTTGGCGACGACGCGTTCCCTGTTGCGCTTAC
GCCTTCGCTATCCTTCAAGCCCGTGTCCGTTCCTCACCGCGCTGAGCTGT
CGGATACGGTAGCGTATGTGGTAAATTTGTCAGTTCGAGGAGGTGGGAGC
CCCTCGAGTGTGGCGGCTATTTCCACAACGTCTGATCTTCATGCCCCCGA
CACGATGTCGAGTTGCAAGAAGACGATGACGTTTTTGTACTGCCCGGATA
CTGATCGCTGGTCGGACTGGACGCGAAGCATCAAGTCCTGGTGCTCCGAA
GTAGATGTCGCATTGTTGGACGCCACATTCTATTCCAAAGGAGAGCTCAA
GGGTCGAGATATGAGCGAGGTTTTCTGCACTCCAAGCATGGCATCCTTTC
TGCTAAACAACCAACCGTGGGCCCAGCTCACGGAGCGAGGCAACATTGTG
ATCCGAGAGTTGGGCGTGAATACGACCGTTGGCGACGACGCGTTCCCTGT
TGCGCTTACGCCTTCGCTATCCTTCAAGCCCGTGTCCGTTCCTCACCGCG
CTGAGCTGTCGGATACGGTAGCGTATGTGGTAAATTTGTCAGTTCGAGGA
GGTGGGAGCCCCTCGAGTGTGGCGGCTATTTCCACAACGTCTGATCTTCA
TGCCCCCGACACGATGTCGAGTTGCAAGAAGACGATGACGTTTTTGTACT
GCCCGGATACTGATCGCTGGTCGGACTGGACGCGAAGCATCAAGTCCTGG
TGCTCCGAAGTAGATGTCGCATTGTTGGACGCCACATTCTATTCCAAAGG
AGAGCTCAAGGGTCGAGATATGAGCGAGGTATCTCATCCCATCGCGCAGG
ACACCATGGCCGAATTGGCCGGCTGCAGGGCTGAGGTGGTATTCATACAC
CTCAACCATACAAACCCGCTTATCACCGCGGATTCTCCAGAGCGAGCCCG
AGCCATTGCTGCGGGCTTCAAGGTATCTCATCCCATCGCGCAGGACACCA
TGGCCGAATTGGCCGGCTGCAGGGCTGAGGTGGTATTCATACACCTCAAC
CATACAAACCCGCTTATCACCGCGGATTCTCCAGAGCGAGCCCGAGCCAT
TGCTGCGGGCTTCAAGGTGGGTACGTTCGGTATGGAATGGGTGATGCCCC
CGGAGACGCCTACCAACCATAGCGCCTAGGTGGGTACGTTCGGTATGGAA
TGGGTGATGCCCCCGGAGACGCCTACCAACCATAGCGCCTAG
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