mRNA_H-canaliculatus_F_contig1171.1525.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1171.1525.1
Unique NamemRNA_H-canaliculatus_F_contig1171.1525.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1171.1525.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.550e-35
Identity = 61/95 (64.21%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:   22 ATGVRMAGKKDEKDDAGSIDVLTGSGLRGVDTSKLTGSDKRDAEWFQRTAEREARGQLQWFEDPAVYLGLCLLVPVVIFVWGVLNCYIPGFCSSN 306
            AT     GK+ + DD   ID+LTGSGLRGVDTSKLTG++KRDA+WF RT  RE    L WFEDP  YLGLCL+VPVV  VWG LNCY+PG C S 
Sbjct:   23 ATSATKRGKEGD-DDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGICPST 112
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BLAST of mRNA_H-canaliculatus_F_contig1171.1525.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 5.300e-33
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:   31 VRMAGKKDEKDDAGSIDVLTGSGLRGVDTSKLTGSDKRDAEWFQRTAEREARGQLQWFEDPAVYLGLCLLVPVVIFVWGVLNCYIPGFCSSN 306
             +     ++ DD   ID+LTGSGLRGVDTSKLTG++KRDA+WF RT  RE    L WFEDP  YLGLCL+VPVV  VWG  NCY+PG C + 
Sbjct:   81 TKRGNTSNDDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGICPAT 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1171.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1A0_ECTSI1.550e-3564.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KI54_9PHAE5.300e-3359.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1171contigH-canaliculatus_F_contig1171:25899..26210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons1
Model size312
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928866.4661083-CDS-H-canaliculatus_F_contig1171:25898..262101622928866.4661083-CDS-H-canaliculatus_F_contig1171:25898..26210Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 25899..26210 -
1696845594.892658-CDS-H-canaliculatus_F_contig1171:25898..262101696845594.892658-CDS-H-canaliculatus_F_contig1171:25898..26210Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 25899..26210 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1171.1525.1prot_H-canaliculatus_F_contig1171.1525.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1171 25899..26210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1171.1525.1

>prot_H-canaliculatus_F_contig1171.1525.1 ID=prot_H-canaliculatus_F_contig1171.1525.1|Name=mRNA_H-canaliculatus_F_contig1171.1525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
ATGRRARATGVRMAGKKDEKDDAGSIDVLTGSGLRGVDTSKLTGSDKRDA
EWFQRTAEREARGQLQWFEDPAVYLGLCLLVPVVIFVWGVLNCYIPGFCS
SNF*
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mRNA from alignment at H-canaliculatus_F_contig1171:25899..26210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1171.1525.1 ID=mRNA_H-canaliculatus_F_contig1171.1525.1|Name=mRNA_H-canaliculatus_F_contig1171.1525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=312bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1171:25899..26210- (Hapterophycus canaliculatus Oshoro5f female)
GCAACGGGGCGAAGAGCGCGGGCAACGGGTGTAAGGATGGCCGGCAAGAA
AGACGAAAAGGACGACGCCGGCAGCATCGACGTTCTTACCGGTAGTGGGC
TGAGGGGAGTGGATACGTCGAAGCTCACGGGCAGCGACAAGAGGGACGCG
GAGTGGTTCCAGCGCACGGCGGAGCGGGAGGCGCGCGGGCAGCTGCAGTG
GTTCGAAGACCCGGCAGTCTACCTCGGCCTATGCTTGCTGGTTCCTGTGG
TGATTTTCGTGTGGGGGGTCCTGAACTGTTACATCCCGGGTTTCTGCTCC
TCCAATTTTTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1171:25899..26210-

>mRNA_H-canaliculatus_F_contig1171.1525.1 ID=mRNA_H-canaliculatus_F_contig1171.1525.1|Name=mRNA_H-canaliculatus_F_contig1171.1525.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1171:25899..26210- (Hapterophycus canaliculatus Oshoro5f female)
GCAACGGGGCGAAGAGCGCGGGCAACGGGTGTAAGGATGGCCGGCAAGAA
AGACGAAAAGGACGACGCCGGCAGCATCGACGTTCTTACCGGTAGTGGGC
TGAGGGGAGTGGATACGTCGAAGCTCACGGGCAGCGACAAGAGGGACGCG
GAGTGGTTCCAGCGCACGGCGGAGCGGGAGGCGCGCGGGCAGCTGCAGTG
GTTCGAAGACCCGGCAGTCTACCTCGGCCTATGCTTGCTGGTTCCTGTGG
TGATTTTCGTGTGGGGGGTCCTGAACTGTTACATCCCGGGTTTCTGCTCC
TCCAATTTTTAGGCAACGGGGCGAAGAGCGCGGGCAACGGGTGTAAGGAT
GGCCGGCAAGAAAGACGAAAAGGACGACGCCGGCAGCATCGACGTTCTTA
CCGGTAGTGGGCTGAGGGGAGTGGATACGTCGAAGCTCACGGGCAGCGAC
AAGAGGGACGCGGAGTGGTTCCAGCGCACGGCGGAGCGGGAGGCGCGCGG
GCAGCTGCAGTGGTTCGAAGACCCGGCAGTCTACCTCGGCCTATGCTTGC
TGGTTCCTGTGGTGATTTTCGTGTGGGGGGTCCTGAACTGTTACATCCCG
GGTTTCTGCTCCTCCAATTTTTAG
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