mRNA_H-canaliculatus_F_contig1171.1521.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1171.1521.1
Unique NamemRNA_H-canaliculatus_F_contig1171.1521.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1171.1521.1 vs. uniprot
Match: A0A6H5KE77_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE77_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 4.440e-31
Identity = 64/80 (80.00%), Postives = 73/80 (91.25%), Query Frame = 1 
Query: 1108 PVGIELNQGDTIGGTVGRTDLAEVLVEAALSPATENIVFEVYDKKSGGPLQGGLPKTSGYELSGDNYASMFKGLQGGVGL 1347
            P GIELNQGDTIGGTVGR D+AEV+VEAALSPATEN +FE+YDKKS  PLQGGLPKTSGYE SG++Y ++FKGLQGG+GL
Sbjct:  276 PAGIELNQGDTIGGTVGRGDVAEVVVEAALSPATENTIFEIYDKKSRAPLQGGLPKTSGYERSGESYEAIFKGLQGGIGL 355
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BLAST of mRNA_H-canaliculatus_F_contig1171.1521.1 vs. uniprot
Match: A0A7S4Q2P9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q2P9_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 2.440e-7
Identity = 41/110 (37.27%), Postives = 57/110 (51.82%), Query Frame = 1 
Query: 1033 GLQSALRPVETH------GSVTPFPLVLANKPVGIELNQGDTIGGTVGRTDLAEVLVEAALSPATENIVFEVYDK----KSGGPLQGGLPKTSGYELSGDNYASMFKGLQ 1332
            G ++ALR   T       G +   P V    P G+E+NQGD +GG V R D A   V AA+   T ++ FE+Y      +  GP   GLP T+GYE  G ++   F+GL+
Sbjct:  253 GAKAALRGTSTRYVVLRPGGLEDAPAV---GPSGLEVNQGDAVGGLVSRADTAAAAVAAAVMADTGDVTFELYAYGAFGQKPGPTDFGLPGTTGYERRGADWPEHFRGLR 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1171.1521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KE77_9PHAE4.440e-3180.00NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A7S4Q2P9_9DINO2.440e-737.27Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1171contigH-canaliculatus_F_contig1171:1661..4499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.9
Seed ortholog evalue3.2e-30
Seed eggNOG ortholog2880.D7G1A3
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size2228
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1171.1521.1prot_H-canaliculatus_F_contig1171.1521.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1171 2539..3515 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.9516003-UTR-H-canaliculatus_F_contig1171:1660..25381622928865.9516003-UTR-H-canaliculatus_F_contig1171:1660..2538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1171 1661..2538 -
1696845594.6477003-UTR-H-canaliculatus_F_contig1171:1660..25381696845594.6477003-UTR-H-canaliculatus_F_contig1171:1660..2538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1171 1661..2538 -
1622928865.996019-UTR-H-canaliculatus_F_contig1171:3515..44991622928865.996019-UTR-H-canaliculatus_F_contig1171:3515..4499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1171 3516..4499 -
1696845594.6917398-UTR-H-canaliculatus_F_contig1171:3515..44991696845594.6917398-UTR-H-canaliculatus_F_contig1171:3515..4499Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1171 3516..4499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.9682348-CDS-H-canaliculatus_F_contig1171:2538..26541622928865.9682348-CDS-H-canaliculatus_F_contig1171:2538..2654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 2539..2654 -
1696845594.6616895-CDS-H-canaliculatus_F_contig1171:2538..26541696845594.6616895-CDS-H-canaliculatus_F_contig1171:2538..2654Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 2539..2654 -
1622928865.9830859-CDS-H-canaliculatus_F_contig1171:3265..35151622928865.9830859-CDS-H-canaliculatus_F_contig1171:3265..3515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 3266..3515 -
1696845594.6708255-CDS-H-canaliculatus_F_contig1171:3265..35151696845594.6708255-CDS-H-canaliculatus_F_contig1171:3265..3515Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1171 3266..3515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1171.1521.1

>prot_H-canaliculatus_F_contig1171.1521.1 ID=prot_H-canaliculatus_F_contig1171.1521.1|Name=mRNA_H-canaliculatus_F_contig1171.1521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
MEVGIPKKIPSTFARRGLQSALRPVETHGSVTPFPLVLANKPVGIELNQG
DTIGGTVGRTDLAEVLVEAALSPATENIVFEVYDKKSGGPLQGGLPKTSG
YELSGDNYASMFKGLQGGVGL*
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mRNA from alignment at H-canaliculatus_F_contig1171:1661..4499-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1171.1521.1 ID=mRNA_H-canaliculatus_F_contig1171.1521.1|Name=mRNA_H-canaliculatus_F_contig1171.1521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2839bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1171:1661..4499- (Hapterophycus canaliculatus Oshoro5f female)
AGATCTACGCCGACGCTCCGAAGGGCGTGGCGTACACCATCGTACGGGCG
GGGGGGCTTAAAGATGGACGTCCCATCGGGCCCACAGGTGGAGCGAAGCT
TAACGGACTCTGTACACCTGCGTCACTACCGTTGATTTAGCAAGAGCATG
GTTGCTGCCGGCGGTGGTCCTAGCGGTCTCCGCCGCGGAGAGCAAAATTC
CTTTGGTCTGCGGGCGGGGTGTGTGCGCAGAGGGGCTTGTTCCTTGCCCG
TGTCATCTTCTCTGGGCGCCCGTGAGTATCTGCATTTCTGGGGTGGGTGC
ACCATGGACACGCACACAGGCTGAACGCGAAACTTGCGTGTTTCTCCGCG
AGGACCCCGGCCCCCTGCCTCGCAGTCACCACGTGCACTCACTCTGACTT
GGCGAGAAGAGGACGGGCAGGTCTTTCTCTCGTGGGCGTTCGTCGAAAGT
TTTCGTTTTCTCAAGAGCGAAGCGTGTGGGTGCCTTCGTAGGCCGAATGG
AGTTGGAATTCGAGCGCTTTTTACCCTTGGGAGGAGCATCCGGAGGGTGT
CGGGGTTGCCTGCGAACGGCCGCGGAAGCGACCGGAAGCAACTCTCCCGT
CAAACGCACAAATAGCAAATCGTGAGTGGGGACCCTGCGCTCCCTCCGTG
TCGCCAAGTTGCCTCCCGTGCCTTCGCTCGCTCCTTTCCAAGGTAGTCCA
TCCCACCCGGGTAACGAAACCTCGATTGAGTTGACACATCTCAGTGTTCC
AGCAGGATTTGGTTCTCCACGGGGCTGGCTACACTGTAGTTGTTTTGGGC
CGAACTCCTTCTCAACCGTGAAAAAGAACCCCGGCGTCTTCTTACGGGGC
TCTGCCGAAGTTATGAAGATGCAGCCGCGGATACGCCTCCTTCGCGGGCG
GTACCGAGACACGCTTCGATCGTGCGCGAGCGGTCGGGCGACGGTCCGTG
TTGCAACCGATGGGCTCCGTTTTGTTTTGCTGCCATGGAGGTGGGAATCC
CGAAAAAAATCCCCTCGACTTTCGCCCGTCGCGGTTTGCAGAGCGCGCTT
CGTCCGGTCGAAACTCACGGCTCGGTTACACCGTTTCCTCTTGTCCTTGC
CAACAAACCGGTAGGCATCGAGCTGAACCAGGGCGACACTATCGGCGGGA
CTGTGGGCCGGACAGACCTCGCGGAGGTGCTAGTGGAGGCCGCGCTGAGC
CCCGCAACAGAAAACATCGTCTTCGAGGTTTACGGTGAGGGAGACAAGAA
CGCAGGGAGAAACGCTGGACGGGGGGCGGGGCACAAATAACGTTTCGCTT
TGAAGCATTTGCGGCTCTGGTGCGAGGAAGAACTGCGGATTCGAGCTGCG
GATTTTTTGTGTGAATTTTTTGTCGGCCGGAACCGACGCGAGGCGGCAAC
AGTGGTGGCCGCCGCACCAAACCAGAGGCAAGATCTACGGTCACACAGAG
CGTAGATTAAGGGCGATTGGGTTGCCATGATGTCTTTCCATCCTAGAACC
CACCGCAAGAGCGAGGCGTCCCCCGCGGAATACAAGCCTCGCTTCTTCGC
AAAGTATTCAGCTGCGGGAGATGCCCACAGAGCGAAACTCTGCCTCTGCC
CGTGCTTGCCCCGGCGCACGTCCATCGAGGGAGGTGGTTGCGGGGGGGGG
TGGGGGGAGGGTCGTTACTCGTACGGTGTGGTGAGCTCGTCTTATAAGCA
GCGTGCTCTTTCTCGTTTGAAATGCGCGTACGGCGTCCTTGACACGTACT
TAAAGGAAGACTCAGGGGGGTCGACAGGAAATTGAGTATATAAGCTTCCC
AACCCCCCCCCCGCGCACCCCTGGTCTTTGTATTGCTTCCGAAAGACAAA
AAAAGCGGCGGCCCGCTCCAGGGAGGCTTGCCGAAGACCTCCGGCTATGA
GCTTAGCGGCGACAACTACGCGTCAATGTTCAAGGGTCTCCAGGGTGGAG
TCGGGCTGTAGTGGAAACGAGAACGATGTGTCGCCATCGCACACGCATTT
CAATCGATTGGGCTTATGCTTAATTTCACTCTCGGGTCTTTTGTTTGCCT
AGAATTTTCAACAGGAGGAAGCCAGCCAATGCTACAAATTAGAAAACTGT
GTCATCTTTGCTTCATGGGACTGCACTGACCGACGGGCATCCCCATCGTG
ACAAGATACCACCGTAGGCAGCATGCATGAAACACACGAGGCGGTTCATG
AAAAGAGAGAGGGCGTGAGTTCAAGATTTTTTTACGCGGCGGTGTCTAGC
AACGAGCGATGGGCAAAGGGGTTTCGGGAATAGCAGAAGCGCGCACGGAG
CCGTCGTAAGACTTGCTGTTCCCAAGAGAAGCCGACGGCACCGATTACTC
GTGTTTCGCACGAGGACGAAAATAGACGGTAGTCAATAGAGTTTTCTGTC
TGTGTTCGTAAAACGTGAGCTTATGGTGTGTGCCTTGATTTTTTTTTAAG
TTGATTGCTTCGACTTGTGCTGTTGAGTCAAAAGCTTTCTGATTTTAGGC
AAATGTAAGCTTCTCGTAAGCATCAAGTGCCAGATGAACAGAGAAGCAAT
CCCGAATCCCATGCTGCTCTTGCGCTCAGCCGCTCGAAAGTATTCGACTG
CGGTCTGGTCCTCTGGGACCAACCTCCGGACGCAAACGGTTGAACATGAC
TTCACAATTTCGATTTTTTCGTCGCTCTGACTTGGATAGCTACATGGTAG
AGACAGCAGCGGGAGTGTATTCCAAGTGCACCCGGTAGCCAGCATTCCAC
GCTTGGATCAAAAGCGCGTCGCGCGTCTCGTAGGAAAATTGTTGAGAACT
GGCGCAAAGCAACATCGGTCAAAACATCGTCGCCATCCC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1171:1661..4499-

>mRNA_H-canaliculatus_F_contig1171.1521.1 ID=mRNA_H-canaliculatus_F_contig1171.1521.1|Name=mRNA_H-canaliculatus_F_contig1171.1521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1171:1661..4499- (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTGGGAATCCCGAAAAAAATCCCCTCGACTTTCGCCCGTCGCGG
TTTGCAGAGCGCGCTTCGTCCGGTCGAAACTCACGGCTCGGTTACACCGT
TTCCTCTTGTCCTTGCCAACAAACCGGTAGGCATCGAGCTGAACCAGGGC
GACACTATCGGCGGGACTGTGGGCCGGACAGACCTCGCGGAGGTGCTAGT
GGAGGCCGCGCTGAGCCCCGCAACAGAAAACATCGTCTTCGAGGTTTACG
ATGGAGGTGGGAATCCCGAAAAAAATCCCCTCGACTTTCGCCCGTCGCGG
TTTGCAGAGCGCGCTTCGTCCGGTCGAAACTCACGGCTCGGTTACACCGT
TTCCTCTTGTCCTTGCCAACAAACCGGTAGGCATCGAGCTGAACCAGGGC
GACACTATCGGCGGGACTGTGGGCCGGACAGACCTCGCGGAGGTGCTAGT
GGAGGCCGCGCTGAGCCCCGCAACAGAAAACATCGTCTTCGAGGTTTACG
ACAAAAAAAGCGGCGGCCCGCTCCAGGGAGGCTTGCCGAAGACCTCCGGC
TATGAGCTTAGCGGCGACAACTACGCGTCAATGTTCAAGGGTCTCCAGGG
TGGAGTCGGGCTGTAGACAAAAAAAGCGGCGGCCCGCTCCAGGGAGGCTT
GCCGAAGACCTCCGGCTATGAGCTTAGCGGCGACAACTACGCGTCAATGT
TCAAGGGTCTCCAGGGTGGAGTCGGGCTGTAG
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