mRNA_H-canaliculatus_F_contig11703.1518.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11703.1518.1
Unique NamemRNA_H-canaliculatus_F_contig11703.1518.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11703.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11703contigH-canaliculatus_F_contig11703:2648..2983 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.522253-CDS-H-canaliculatus_F_contig11703:2649..27351622928865.522253-CDS-H-canaliculatus_F_contig11703:2649..2735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11703 2650..2735 -
1696845594.4220953-CDS-H-canaliculatus_F_contig11703:2649..27351696845594.4220953-CDS-H-canaliculatus_F_contig11703:2649..2735Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11703 2650..2735 -
1622928865.5410204-CDS-H-canaliculatus_F_contig11703:2895..29831622928865.5410204-CDS-H-canaliculatus_F_contig11703:2895..2983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11703 2896..2983 -
1696845594.439905-CDS-H-canaliculatus_F_contig11703:2895..29831696845594.439905-CDS-H-canaliculatus_F_contig11703:2895..2983Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11703 2896..2983 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11703.1518.1prot_H-canaliculatus_F_contig11703.1518.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11703 2650..2983 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11703.1518.1

>prot_H-canaliculatus_F_contig11703.1518.1 ID=prot_H-canaliculatus_F_contig11703.1518.1|Name=mRNA_H-canaliculatus_F_contig11703.1518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
LLQHVHKAKSPASVTDMFRGARDCIHRVRFIQGRHGSYARQAPFGTQQSR
RDPGAGIG
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mRNA from alignment at H-canaliculatus_F_contig11703:2648..2983-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11703.1518.1 ID=mRNA_H-canaliculatus_F_contig11703.1518.1|Name=mRNA_H-canaliculatus_F_contig11703.1518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11703:2648..2983- (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTCAGCACGTACACAAAGCCAAGTCCCCGGCGTCTGTCACGGACAT
GTTCCGCGGCGCACGGGATTGTATCCACAGAGTGCGATGTGAGTAAAGTT
CAATCCGGGTTGCAACGTTGCTCTAGCTTGACACCGTTGCTTGTGTTCAA
GATGCGTCTACCGCGGAGCATACGTTGTTCCTACCTTGTCACCGTCGTCA
TGCTCTCTTCGCGCCTGTTGTCCTGTCGTCCGTGTCTTTCGTACGCAGTT
ATTCAAGGACGTCATGGGTCATATGCTCGGCAGGCTCCTTTCGGCACACA
GCAAAGCCGCAGGGACCCCGGTGCAGGCATCGGATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11703:2648..2983-

>mRNA_H-canaliculatus_F_contig11703.1518.1 ID=mRNA_H-canaliculatus_F_contig11703.1518.1|Name=mRNA_H-canaliculatus_F_contig11703.1518.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11703:2648..2983- (Hapterophycus canaliculatus Oshoro5f female)
CTCCTTCAGCACGTACACAAAGCCAAGTCCCCGGCGTCTGTCACGGACAT
GTTCCGCGGCGCACGGGATTGTATCCACAGAGTGCGATCTCCTTCAGCAC
GTACACAAAGCCAAGTCCCCGGCGTCTGTCACGGACATGTTCCGCGGCGC
ACGGGATTGTATCCACAGAGTGCGATTTATTCAAGGACGTCATGGGTCAT
ATGCTCGGCAGGCTCCTTTCGGCACACAGCAAAGCCGCAGGGACCCCGGT
GCAGGCATCGGATTATTCAAGGACGTCATGGGTCATATGCTCGGCAGGCT
CCTTTCGGCACACAGCAAAGCCGCAGGGACCCCGGTGCAGGCATCGGA
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