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Homology
BLAST of mRNA_H-canaliculatus_F_contig11702.1517.1 vs. uniprot
Match: D8LDP3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP3_ECTSI) HSP 1 Score: 353 bits (906), Expect = 5.360e-106 Identity = 273/475 (57.47%), Postives = 297/475 (62.53%), Query Frame = 1
Query: 1 QVRSRLNGQILELMAADVTEWLPRYCLPSVIARVEPKKPGEKRSAAXXXXXXXXXXXXXXXXXXTLSLDLISMSTNXXXXXXXXXXPASSAPSSPSSARLPTVHHFVMTVPRKKPSPPGSPLGGSPS-LSADRGGGXXXXXXXXXXXXEGRGSTGSGATGGI--RRGLNREESDRRWATAKPVKGAFPVAIDRENNIVLHGACSTVWRKVEEGEGEGEGAPRRDGGRGNEGASSAAAAATTAYVPRCVCALSFDPLFDTLRAVALARGGYPEAGRALMVSARGVGXXXXXXXXXXXXIREXXXXXXXXXNVPGAAHGAGAVGDQSATGEGQAG-PLEWGLGDAATLKAGRPPLPILPPPPPRKGPTLPTVFAPSVAREASW----TGRNAPPLVQSLSAPDSMGGWSSAGDGLGWGSSADGWSTEEEGSWRGRVRGG------GGSGGTPGAGGWSSFGLPPLVPLDHPVEPLFQ 1383
+VRSRLNGQILELMAA+VTE LPRYCLPS IARVE KKPGEK+ XXXXX XXXXXX + A LP VHHFVMTVPRK+ SP SP GSPS +S RGGG XXXX EG G R+G+NR+ESDRRWA AK +G FP AIDR++NIVLHGAC TVWRK + EG+ RD +E A A TTAYVPRCVCALSFDPLFDTLRAVALARGG+PE RALMV G G XXXXXXX XXXXXXXXX +AG LEWGLGDAATLKAGRPPLPILPPPPP GPTLP+VFAPS++R+A T R PPLVQS SAPDSMGGWSS G+G G+STEEEG WRG GG G AGG S+FGLPPLVPLDHPVEPLFQ
Sbjct: 450 EVRSRLNGQILELMAANVTEALPRYCLPSAIARVEAKKPGEKKRTLPKVDLSFPITFSSXXXXXXXXXXXXXXXXXXXXXXXLRHH-GERGDGEAAEAMLPRVHHFVMTVPRKRSSPSVSPRVGSPSRMSTGRGGGGEGSXXXXR---EGAGXXXXXXXXXXXXRKGVNRQESDRRWAIAKATQGTFPAAIDRDSNIVLHGACLTVWRKADSDEGDEGDLWGRDSDDDDE--EDGARAKTTAYVPRCVCALSFDPLFDTLRAVALARGGHPETARALMVGRGGGGVELSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE----KAGLRLEWGLGDAATLKAGRPPLPILPPPPPTPGPTLPSVFAPSLSRDAGGDAARTLRKPPPLVQSNSAPDSMGGWSSTGEG--------GYSTEEEGPWRGXXXXXXXXXAIGGRSGDRIAGGLSAFGLPPLVPLDHPVEPLFQ 906
BLAST of mRNA_H-canaliculatus_F_contig11702.1517.1 vs. uniprot
Match: A0A6H5JQ29_9PHAE (DENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ29_9PHAE) HSP 1 Score: 291 bits (744), Expect = 2.640e-85 Identity = 238/472 (50.42%), Postives = 260/472 (55.08%), Query Frame = 1
Query: 1 QVRSRLNGQILELMAADVTEWLPRYCLPSVIARVEPKKPGEKRSAAXXXXXXXXXXXXXXXXXXTLSLDLISMSTNXXXXXXXXXXPASSAP-------SSPSSARLPTVHHFVMTVPRKKPSPPGSPLGGSPSLSADRGGGXXXXXXXXXXXXEGRGSTGSGATGGIRRGLNREESDRRWATAKPVKGAFPVAIDRENNIVLHGACSTVWRKVEEGEGEGEGAPRRDGGRGNEGASSAAAAATTAYVPRCVCALSFDPLFDTLRAVALARGGYPEAGRALMVSARGVGXXXXXXXXXXXXIREXXXXXXXXXNVPGAAHGAGAVGDQSATGEGQAGPLEWGLGDAATLKAGRPPLPILPPPPPRKGPTLPTVFAPSVAREASW--TG--RNAPPLVQSLSAPDSMGGWSSAGDGLGWGSSADGWSTEEEGSWRGRVRGGGGSGGTPGAGGWSSFGLPPLVPLDHPVEPLFQ 1383
+VRSRLNGQILELMAA+VTE LPRYCLPS IARVE KKPGEK+ A + SL XXXXXXXXX P P + A LP VHHFVMTVPRK+ GG G R+G+N +ES+RRWA AK +G FP AIDR++NIVLHGAC TVWRK + E + RD A TTAYVPRCVCALSFDPLFDTLRAVALARGG+PE RALMV G G XXXXXXX XXXXXXXXX GE LEWGLGDAATLKAGRPPLPILPPPPP GPTLP++FAPS++REA TG RN PPLVQS SAPDSMGGWS G+ S+FGLPPLVPLDHPVEPLFQ
Sbjct: 10 EVRSRLNGQILELMAANVTEALPRYCLPSAIARVEAKKPGEKKRALPKVDLSFPITFSS-----SSSLXXXXXXXXXXXXXXXXXLPLPPLPHHGERGDGEAAEAMLPRVHHFVMTVPRKR-------TGGXXXXXXXX------------------------XXDGSRKGVNLQESERRWAIAKATQGTFPAAIDRDSNIVLHGACLTVWRKADSDEDDEGDLWGRDSDXXXX--EDGTRAKTTAYVPRCVCALSFDPLFDTLRAVALARGGHPETARALMVGRGGGGVELSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XXXXGEKAGMRLEWGLGDAATLKAGRPPLPILPPPPPNPGPTLPSLFAPSLSREAGGDATGMLRNPPPLVQSNSAPDSMGGWSFTGEXXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXLSAFGLPPLVPLDHPVEPLFQ 439
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | DENN domain |
Ec32 ortholog | Ec-19_001420.1 |
Exons | 4 |
Model size | 1383 |
Cds size | 1383 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622928865.4134667-CDS-H-canaliculatus_F_contig11702:1501..1615 | 1622928865.4134667-CDS-H-canaliculatus_F_contig11702:1501..1615 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 1502..1615 + |
1696845594.3820155-CDS-H-canaliculatus_F_contig11702:1501..1615 | 1696845594.3820155-CDS-H-canaliculatus_F_contig11702:1501..1615 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 1502..1615 + |
1622928865.4324343-CDS-H-canaliculatus_F_contig11702:2045..2421 | 1622928865.4324343-CDS-H-canaliculatus_F_contig11702:2045..2421 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 2046..2421 + |
1696845594.391751-CDS-H-canaliculatus_F_contig11702:2045..2421 | 1696845594.391751-CDS-H-canaliculatus_F_contig11702:2045..2421 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 2046..2421 + |
1622928865.44837-CDS-H-canaliculatus_F_contig11702:2747..3137 | 1622928865.44837-CDS-H-canaliculatus_F_contig11702:2747..3137 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 2748..3137 + |
1696845594.401967-CDS-H-canaliculatus_F_contig11702:2747..3137 | 1696845594.401967-CDS-H-canaliculatus_F_contig11702:2747..3137 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 2748..3137 + |
1622928865.4670434-CDS-H-canaliculatus_F_contig11702:3221..3724 | 1622928865.4670434-CDS-H-canaliculatus_F_contig11702:3221..3724 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 3222..3724 + |
1696845594.4119844-CDS-H-canaliculatus_F_contig11702:3221..3724 | 1696845594.4119844-CDS-H-canaliculatus_F_contig11702:3221..3724 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11702 3222..3724 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11702.1517.1 >prot_H-canaliculatus_F_contig11702.1517.1 ID=prot_H-canaliculatus_F_contig11702.1517.1|Name=mRNA_H-canaliculatus_F_contig11702.1517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=461bp
QVRSRLNGQILELMAADVTEWLPRYCLPSVIARVEPKKPGEKRSAAAAAA APAGGGTAAAVAAATLSLDLISMSTNTSSSSSASSSPASSAPSSPSSARL PTVHHFVMTVPRKKPSPPGSPLGGSPSLSADRGGGEGEGMGAGRGRREGR GSTGSGATGGIRRGLNREESDRRWATAKPVKGAFPVAIDRENNIVLHGAC STVWRKVEEGEGEGEGAPRRDGGRGNEGASSAAAAATTAYVPRCVCALSF DPLFDTLRAVALARGGYPEAGRALMVSARGVGGGGGGEGGGGGAIREGGA GGGGGGNVPGAAHGAGAVGDQSATGEGQAGPLEWGLGDAATLKAGRPPLP ILPPPPPRKGPTLPTVFAPSVAREASWTGRNAPPLVQSLSAPDSMGGWSS AGDGLGWGSSADGWSTEEEGSWRGRVRGGGGSGGTPGAGGWSSFGLPPLV PLDHPVEPLFQ back to topmRNA from alignment at H-canaliculatus_F_contig11702:1502..3724+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig11702.1517.1 ID=mRNA_H-canaliculatus_F_contig11702.1517.1|Name=mRNA_H-canaliculatus_F_contig11702.1517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2223bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11702:1502..3724+ (Hapterophycus canaliculatus Oshoro5f female) CAGGTGCGGTCACGCTTGAACGGGCAGATCCTGGAGCTAATGGCTGCGGA
CGTGACGGAGTGGCTCCCTCGGTACTGCTTGCCATCGGTGATCGCGCGCG
TCGAGCCGAAGAAGGTGACCGCGTCGCCGTCGCCGTAGCCGTAGCCGTAG
CCGTAGCCGTTGTCATCGTCGTCCTGCTCCTCGTCGTCCTGTCATTTCTT
TCAAGAGATGATCAAGCAAGAAGAAGCTTGCTCAGGAAGGTGTTAGGCGT
TTCGCTGACGGCGTCCGATCGCCGGGGACATCGGGGTTGTGCGCGTCGTG
GACTGTCGTGCATGTATGATGTGGACATCGCATCATCCTTTGCGTCGTGT
CGAGCATCGGGCTAGGAAGGCAAACAGCCTTCTGCTTCTCCGGCCTGATT
ATCTCGCTCCCTGCCCCTGCCCCTGACCCCCCCCCCTCTGCACTCCCCGC
ATGCTCGCCGGCATGACTGGCTCGGCTCGGGGTGATGTCTGCCCGACCCC
AACCCCGATCATCTTTCCGTCCTTTCGTCATCGGGGCGAAACAGCCGGGC
GAGAAGCGCTCGGCGGCGGCGGCGGCGGCAGCGCCGGCTGGGGGGGGCAC
CGCGGCGGCGGTGGCTGCGGCGACGCTGTCGTTGGACCTTATCTCCATGT
CCACCAACACCTCAAGTTCGTCGTCGGCGTCATCGTCGCCAGCGTCTTCG
GCTCCCTCGTCCCCCTCGTCGGCTCGGCTGCCGACGGTCCACCACTTCGT
CATGACGGTCCCGCGGAAGAAGCCCTCGCCCCCTGGTTCTCCCTTGGGGG
GTTCGCCGTCGCTGTCCGCCGACAGAGGCGGGGGAGAGGGCGAGGGGATG
GGGGCCGGGAGGGGGAGGCGAGAGGGCCGTGGGAGCACCGGCAGCGGTGC
GACCGGCGGCATTCGGAGAGGTAAAACAACGATGTACACACACACACACA
CACACACACACACACACACACACACACACACACACACACTCATGCACACC
TGTGGAGAGCGCGTGAGTTTGTTCGTCCTCCGTCTCGCTGTGGGTTTTCT
TAGTTCGACCTTCCGTCTTTCGCCCAGAATCCTGGCTTTTGCTTTAATTC
GTGCCGCCGACGGAGCTAGGGCCGTTTTCCTGCCCCTGTTTCTCTCCTGT
GCTACCCCCCGCCCCCTCGACCCCTTATCCACCTACACGCCCCCCTCCCC
CCCACCACGTCTCTGGAACGATATCGTCCTCCCCTTCTGCGGACAGGCCT
GAACCGAGAGGAGTCCGACCGGCGGTGGGCTACCGCGAAGCCCGTCAAGG
GAGCCTTTCCGGTGGCCATCGACCGCGAGAACAACATCGTCCTGCACGGC
GCGTGCTCGACCGTCTGGCGCAAGGTGGAAGAGGGGGAGGGGGAAGGGGA
GGGGGCCCCGCGGAGAGACGGCGGCAGGGGCAACGAGGGTGCCTCCTCCG
CCGCGGCCGCGGCGACGACGGCGTACGTGCCTAGGTGCGTGTGCGCGCTG
TCCTTCGACCCCCTGTTCGACACCCTCCGCGCCGTGGCCCTCGCGAGGGG
AGGCTACCCGGAGGCGGGTCGCGCGCTCATGGTGAGCGCGAGGGGAGTAG
GGGGGGGAGGAGGGGGCGAAGGAGGCGGAGGGGGGGGTGGGGGAGGCGCG
CCGGCGCAGTCGGCGCAACCGAATGATCACGTCAGCGAGGTTGACGCCAC
GGGCCGGACCACGGCTGCAGCGATACGAGAAGGAGGAGCAGGAGGAGGAG
GAGGAGGAAATGTACCCGGCGCCGCTCATGGCGCCGGTGCTGTCGGCGAC
CAGTCGGCGACGGGGGAGGGGCAGGCCGGGCCGCTGGAGTGGGGGCTGGG
GGACGCGGCCACGCTCAAGGCCGGGCGCCCCCCGCTGCCTATCCTCCCGC
CGCCGCCCCCGAGGAAGGGGCCGACGCTGCCGACGGTCTTCGCCCCTTCC
GTCGCGCGGGAGGCGTCGTGGACGGGAAGGAACGCGCCCCCCCTCGTGCA
GTCCCTCTCCGCTCCGGACTCGATGGGGGGGTGGTCGTCCGCCGGGGACG
GGCTGGGGTGGGGGTCGTCCGCCGACGGGTGGTCGACGGAGGAGGAAGGG
TCTTGGCGGGGGCGGGTGAGGGGGGGTGGGGGGAGCGGGGGCACCCCGGG
GGCGGGGGGGTGGTCGAGCTTCGGGCTGCCGCCGCTGGTGCCGCTGGATC
ACCCCGTGGAGCCCTTGTTTCAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig11702:1502..3724+ >mRNA_H-canaliculatus_F_contig11702.1517.1 ID=mRNA_H-canaliculatus_F_contig11702.1517.1|Name=mRNA_H-canaliculatus_F_contig11702.1517.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=2766bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11702:1502..3724+ (Hapterophycus canaliculatus Oshoro5f female) CAGGTGCGGTCACGCTTGAACGGGCAGATCCTGGAGCTAATGGCTGCGGA CGTGACGGAGTGGCTCCCTCGGTACTGCTTGCCATCGGTGATCGCGCGCG TCGAGCCGAAGAAGCAGGTGCGGTCACGCTTGAACGGGCAGATCCTGGAG CTAATGGCTGCGGACGTGACGGAGTGGCTCCCTCGGTACTGCTTGCCATC GGTGATCGCGCGCGTCGAGCCGAAGAAGCCGGGCGAGAAGCGCTCGGCGG CGGCGGCGGCGGCAGCGCCGGCTGGGGGGGGCACCGCGGCGGCGGTGGCT GCGGCGACGCTGTCGTTGGACCTTATCTCCATGTCCACCAACACCTCAAG TTCGTCGTCGGCGTCATCGTCGCCAGCGTCTTCGGCTCCCTCGTCCCCCT CGTCGGCTCGGCTGCCGACGGTCCACCACTTCGTCATGACGGTCCCGCGG AAGAAGCCCTCGCCCCCTGGTTCTCCCTTGGGGGGTTCGCCGTCGCTGTC CGCCGACAGAGGCGGGGGAGAGGGCGAGGGGATGGGGGCCGGGAGGGGGA GGCGAGAGGGCCGTGGGAGCACCGGCAGCGGTGCGACCGGCGGCATTCGG AGAGCCGGGCGAGAAGCGCTCGGCGGCGGCGGCGGCGGCAGCGCCGGCTG GGGGGGGCACCGCGGCGGCGGTGGCTGCGGCGACGCTGTCGTTGGACCTT ATCTCCATGTCCACCAACACCTCAAGTTCGTCGTCGGCGTCATCGTCGCC AGCGTCTTCGGCTCCCTCGTCCCCCTCGTCGGCTCGGCTGCCGACGGTCC ACCACTTCGTCATGACGGTCCCGCGGAAGAAGCCCTCGCCCCCTGGTTCT CCCTTGGGGGGTTCGCCGTCGCTGTCCGCCGACAGAGGCGGGGGAGAGGG CGAGGGGATGGGGGCCGGGAGGGGGAGGCGAGAGGGCCGTGGGAGCACCG GCAGCGGTGCGACCGGCGGCATTCGGAGAGGCCTGAACCGAGAGGAGTCC GACCGGCGGTGGGCTACCGCGAAGCCCGTCAAGGGAGCCTTTCCGGTGGC CATCGACCGCGAGAACAACATCGTCCTGCACGGCGCGTGCTCGACCGTCT GGCGCAAGGTGGAAGAGGGGGAGGGGGAAGGGGAGGGGGCCCCGCGGAGA GACGGCGGCAGGGGCAACGAGGGTGCCTCCTCCGCCGCGGCCGCGGCGAC GACGGCGTACGTGCCTAGGTGCGTGTGCGCGCTGTCCTTCGACCCCCTGT TCGACACCCTCCGCGCCGTGGCCCTCGCGAGGGGAGGCTACCCGGAGGCG GGTCGCGCGCTCATGGTGAGCGCGAGGGGAGTAGGGGGGGGAGGAGGGGG CGAAGGAGGCGGAGGGGGGGGCCTGAACCGAGAGGAGTCCGACCGGCGGT GGGCTACCGCGAAGCCCGTCAAGGGAGCCTTTCCGGTGGCCATCGACCGC GAGAACAACATCGTCCTGCACGGCGCGTGCTCGACCGTCTGGCGCAAGGT GGAAGAGGGGGAGGGGGAAGGGGAGGGGGCCCCGCGGAGAGACGGCGGCA GGGGCAACGAGGGTGCCTCCTCCGCCGCGGCCGCGGCGACGACGGCGTAC GTGCCTAGGTGCGTGTGCGCGCTGTCCTTCGACCCCCTGTTCGACACCCT CCGCGCCGTGGCCCTCGCGAGGGGAGGCTACCCGGAGGCGGGTCGCGCGC TCATGGTGAGCGCGAGGGGAGTAGGGGGGGGAGGAGGGGGCGAAGGAGGC GGAGGGGGGGCGATACGAGAAGGAGGAGCAGGAGGAGGAGGAGGAGGAAA TGTACCCGGCGCCGCTCATGGCGCCGGTGCTGTCGGCGACCAGTCGGCGA CGGGGGAGGGGCAGGCCGGGCCGCTGGAGTGGGGGCTGGGGGACGCGGCC ACGCTCAAGGCCGGGCGCCCCCCGCTGCCTATCCTCCCGCCGCCGCCCCC GAGGAAGGGGCCGACGCTGCCGACGGTCTTCGCCCCTTCCGTCGCGCGGG AGGCGTCGTGGACGGGAAGGAACGCGCCCCCCCTCGTGCAGTCCCTCTCC GCTCCGGACTCGATGGGGGGGTGGTCGTCCGCCGGGGACGGGCTGGGGTG GGGGTCGTCCGCCGACGGGTGGTCGACGGAGGAGGAAGGGTCTTGGCGGG GGCGGGTGAGGGGGGGTGGGGGGAGCGGGGGCACCCCGGGGGCGGGGGGG TGGTCGAGCTTCGGGCTGCCGCCGCTGGTGCCGCTGGATCACCCCGTGGA GCCCTTGTTTCAGCGATACGAGAAGGAGGAGCAGGAGGAGGAGGAGGAGG AAATGTACCCGGCGCCGCTCATGGCGCCGGTGCTGTCGGCGACCAGTCGG CGACGGGGGAGGGGCAGGCCGGGCCGCTGGAGTGGGGGCTGGGGGACGCG GCCACGCTCAAGGCCGGGCGCCCCCCGCTGCCTATCCTCCCGCCGCCGCC CCCGAGGAAGGGGCCGACGCTGCCGACGGTCTTCGCCCCTTCCGTCGCGC GGGAGGCGTCGTGGACGGGAAGGAACGCGCCCCCCCTCGTGCAGTCCCTC TCCGCTCCGGACTCGATGGGGGGGTGGTCGTCCGCCGGGGACGGGCTGGG GTGGGGGTCGTCCGCCGACGGGTGGTCGACGGAGGAGGAAGGGTCTTGGC GGGGGCGGGTGAGGGGGGGTGGGGGGAGCGGGGGCACCCCGGGGGCGGGG GGGTGGTCGAGCTTCGGGCTGCCGCCGCTGGTGCCGCTGGATCACCCCGT GGAGCCCTTGTTTCAG back to top
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