mRNA_H-canaliculatus_F_contig11702.1516.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11702.1516.1
Unique NamemRNA_H-canaliculatus_F_contig11702.1516.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11702.1516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11702contigH-canaliculatus_F_contig11702:131..497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928865.2616029-CDS-H-canaliculatus_F_contig11702:130..4961622928865.2616029-CDS-H-canaliculatus_F_contig11702:130..496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11702 131..496 +
1696845594.3718865-CDS-H-canaliculatus_F_contig11702:130..4961696845594.3718865-CDS-H-canaliculatus_F_contig11702:130..496Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11702 131..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11702.1516.1prot_H-canaliculatus_F_contig11702.1516.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11702 131..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11702.1516.1

>prot_H-canaliculatus_F_contig11702.1516.1 ID=prot_H-canaliculatus_F_contig11702.1516.1|Name=mRNA_H-canaliculatus_F_contig11702.1516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=122bp
RHQYVRPLARRKEGKRPGTQSRDGSRAAQQSCLTLAEHRPTTTTAAHQTG
PCFHAALETREPTYPAPERQAEADARGSAAASGARRDSDPLHIFGQNVPG
IFSGARGTADPQSRRVRVPGSR
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mRNA from alignment at H-canaliculatus_F_contig11702:131..497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11702.1516.1 ID=mRNA_H-canaliculatus_F_contig11702.1516.1|Name=mRNA_H-canaliculatus_F_contig11702.1516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=367bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11702:131..497+ (Hapterophycus canaliculatus Oshoro5f female)
CGTCACCAGTACGTCCGCCCGCTCGCCCGCCGGAAAGAAGGGAAGCGACC
GGGAACGCAAAGCCGGGACGGCTCGCGCGCAGCACAACAGTCCTGTTTGA
CTCTGGCGGAGCACAGGCCAACCACCACAACCGCAGCACACCAGACAGGG
CCGTGCTTCCACGCCGCTCTTGAGACACGGGAGCCGACCTACCCGGCGCC
GGAGAGGCAAGCCGAAGCGGACGCACGAGGGAGCGCTGCGGCGTCCGGTG
CCCGACGAGATTCCGATCCTCTACACATCTTCGGCCAGAACGTTCCCGGA
ATTTTCTCGGGCGCACGCGGCACTGCCGACCCACAATCCCGCCGCGTTAG
AGTGCCGGGGTCCAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11702:131..497+

>mRNA_H-canaliculatus_F_contig11702.1516.1 ID=mRNA_H-canaliculatus_F_contig11702.1516.1|Name=mRNA_H-canaliculatus_F_contig11702.1516.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=732bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11702:131..497+ (Hapterophycus canaliculatus Oshoro5f female)
CGTCACCAGTACGTCCGCCCGCTCGCCCGCCGGAAAGAAGGGAAGCGACC
GGGAACGCAAAGCCGGGACGGCTCGCGCGCAGCACAACAGTCCTGTTTGA
CTCTGGCGGAGCACAGGCCAACCACCACAACCGCAGCACACCAGACAGGG
CCGTGCTTCCACGCCGCTCTTGAGACACGGGAGCCGACCTACCCGGCGCC
GGAGAGGCAAGCCGAAGCGGACGCACGAGGGAGCGCTGCGGCGTCCGGTG
CCCGACGAGATTCCGATCCTCTACACATCTTCGGCCAGAACGTTCCCGGA
ATTTTCTCGGGCGCACGCGGCACTGCCGACCCACAATCCCGCCGCGTTAG
AGTGCCGGGGTCCAGGCGTCACCAGTACGTCCGCCCGCTCGCCCGCCGGA
AAGAAGGGAAGCGACCGGGAACGCAAAGCCGGGACGGCTCGCGCGCAGCA
CAACAGTCCTGTTTGACTCTGGCGGAGCACAGGCCAACCACCACAACCGC
AGCACACCAGACAGGGCCGTGCTTCCACGCCGCTCTTGAGACACGGGAGC
CGACCTACCCGGCGCCGGAGAGGCAAGCCGAAGCGGACGCACGAGGGAGC
GCTGCGGCGTCCGGTGCCCGACGAGATTCCGATCCTCTACACATCTTCGG
CCAGAACGTTCCCGGAATTTTCTCGGGCGCACGCGGCACTGCCGACCCAC
AATCCCGCCGCGTTAGAGTGCCGGGGTCCAGG
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