mRNA_H-canaliculatus_F_contig1170.1510.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1170.1510.1
Unique NamemRNA_H-canaliculatus_F_contig1170.1510.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1170.1510.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 8.810e-73
Identity = 178/308 (57.79%), Postives = 215/308 (69.81%), Query Frame = 1 
Query:   76 IMLSSNTHLALLALLLGSQQGESHRYRTH------QGRHLFRPLPAFMSSD-VDMGAFRPFSSY-PRGGSLFTSTGPLVDIFQEVVGDIKKVVARELSDSSPPARTPRHEVIETAEAATVTVDFPGCKKEDVDAQLSEVAGKKTLTITAVRKKPTPVTRNRKDSENAEAPSA--GSXXXXXXXXXXXXXXXXXXXEPEAAATMAAGSASPSFTEETFELSFLVGEEVDVSAIRGSLEDGVLTLVLPKLAPEPPAEPIDIPIDFNGGNGEGNEGDRGQDE----ASLGRREASKGATSDADAGTHISLS 957
            ++ S+NTHLALLALLLG+QQGE HRYRTH       GR LF+ LP  ++++ VD GAFRPF    PRG    +S GPL+D+FQ+V+G+IKKV A ELSD +  AR+P +EV+ET +AAT+ VD PGCKKEDVDAQ+SE +G KTLTITAVRKKP      R+   +A +PS+   +   XXXXXXXXXXXXXXXX P  AA      +  SF+EE+F+LSF VGE++DVS IRG LEDGVLTLVLPKLAPEPPAEPIDIPIDF               E    AS G +E S G  +  DA THISL+
Sbjct:    1 MVTSTNTHLALLALLLGTQQGECHRYRTHGGHXXXXGRRLFQ-LPTVVNNEIVDTGAFRPFRHVQPRGRPHVSSAGPLMDVFQDVMGEIKKV-ACELSDPTTEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKP------RQADGDARSPSSPPDTSGSXXXXXXXXXXXXXXXXAPHEAAKDTPEPSLSSFSEESFKLSFRVGEDIDVSVIRGGLEDGVLTLVLPKLAPEPPAEPIDIPIDFTSSTRSNTGXXXXXRERHAAASTGGKEESIG-DAGGDADTHISLA 299
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1170.1510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5P0_ECTSI8.810e-7357.79SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1170contigH-canaliculatus_F_contig1170:2190..5978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-12_008570.1
Exons2
Model size2302
Cds size882
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1170.1510.1prot_H-canaliculatus_F_contig1170.1510.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1170 2268..4636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928864.463459-UTR-H-canaliculatus_F_contig1170:2189..22671622928864.463459-UTR-H-canaliculatus_F_contig1170:2189..2267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1170 2190..2267 +
1696845594.00252-UTR-H-canaliculatus_F_contig1170:2189..22671696845594.00252-UTR-H-canaliculatus_F_contig1170:2189..2267Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1170 2190..2267 +
1622928864.5157108-UTR-H-canaliculatus_F_contig1170:4636..59781622928864.5157108-UTR-H-canaliculatus_F_contig1170:4636..5978Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1170 4637..5978 +
1696845594.0380795-UTR-H-canaliculatus_F_contig1170:4636..59781696845594.0380795-UTR-H-canaliculatus_F_contig1170:4636..5978Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1170 4637..5978 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928864.4812765-CDS-H-canaliculatus_F_contig1170:2267..25141622928864.4812765-CDS-H-canaliculatus_F_contig1170:2267..2514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1170 2268..2514 +
1696845594.0177405-CDS-H-canaliculatus_F_contig1170:2267..25141696845594.0177405-CDS-H-canaliculatus_F_contig1170:2267..2514Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1170 2268..2514 +
1622928864.498609-CDS-H-canaliculatus_F_contig1170:4001..46361622928864.498609-CDS-H-canaliculatus_F_contig1170:4001..4636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1170 4002..4636 +
1696845594.0296419-CDS-H-canaliculatus_F_contig1170:4001..46361696845594.0296419-CDS-H-canaliculatus_F_contig1170:4001..4636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1170 4002..4636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1170.1510.1

>prot_H-canaliculatus_F_contig1170.1510.1 ID=prot_H-canaliculatus_F_contig1170.1510.1|Name=mRNA_H-canaliculatus_F_contig1170.1510.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=294bp
MLSSNTHLALLALLLGSQQGESHRYRTHQGRHLFRPLPAFMSSDVDMGAF
RPFSSYPRGGSLFTSTGPLVDIFQEVVGDIKKVVARELSDSSPPARTPRH
EVIETAEAATVTVDFPGCKKEDVDAQLSEVAGKKTLTITAVRKKPTPVTR
NRKDSENAEAPSAGSSESTESTTTSSGTAAEAPAEPEAAATMAAGSASPS
FTEETFELSFLVGEEVDVSAIRGSLEDGVLTLVLPKLAPEPPAEPIDIPI
DFNGGNGEGNEGDRGQDEASLGRREASKGATSDADAGTHISLS*
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mRNA from alignment at H-canaliculatus_F_contig1170:2190..5978+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1170.1510.1 ID=mRNA_H-canaliculatus_F_contig1170.1510.1|Name=mRNA_H-canaliculatus_F_contig1170.1510.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3789bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1170:2190..5978+ (Hapterophycus canaliculatus Oshoro5f female)
CACACAGTTATCCCCGGCAGCAAAACAAGACCAGGCACAGCTTTACACAG
GGCAACAGCAAGCAGCGGTCGACCTATCATGTTGAGCTCCAACACTCACC
TCGCCCTCCTCGCGCTGCTCCTCGGCTCTCAGCAAGGGGAGTCGCACCGC
TACCGCACGCACCAAGGCCGGCATCTCTTCAGGCCTCTGCCGGCCTTCAT
GAGCAGCGACGTGGACATGGGGGCATTCCGCCCGTTCTCATCCTATCCTC
GAGGCGGTAGCTTGTTCACCTCCACCGGCCCGCTGGTGGACATCTTCCAA
GAAGTCGTGGGAGACATCAAGAAAGGTGGGTTGTGGATCCGACGGGTCCC
GTCGTCACTCGATCAAATCAACTCGTAGATTCCTTTCCCAGAAGTTTCTA
ACGCTGGAGATCCTTGTTCCACTAAACCATCGTCCGCAGTCCAGGTCGGA
GCGCTGTTGCATTCTGTTAAAATCGTCTGCAGCATGTGAATAATATCACT
GCTGTTCAAGTGTTGTTTGTTGCGTCCCTAGACCGTAGCCGAAGACACCT
TTGTTTCACCCGTCGTACATCTACTCTGGAGGCCCCCGCGCTGCGCTTGC
TGAAATCTTTCTATTTACTTGTTGTAGCAGAATGGACATCACATGTGACT
TGCGCACGCATGGTGTTGCGGTTCACTGAGCTAGTGGTTTGTGCAAGTAT
TCACGAGTGGCTCTCCTGGCCGCTCTTGTTTACACAGCGGAACTGGCACA
CTCGCCAGAAACAGAGTATTTTTGTAGACTACAGATTGGTCTACGGATGG
CGTTGGATAATTTGGCGGGAGCCTTGCGGGTTCTTCATTTCCCTTCGGCT
GTGTACCAAAAGCTACCCAACGAAGGTTTCATTGTAGGGCTTCTTGTCAA
ACCCACGGGAACAATGCTAAACTTCTTAACGTACATCGTGTGTTCTTCAG
AGGTACGCATTTACTGTCGGTAGACTTGTACAAGGTATTTGAACACACCT
CTCGCCCATTTCGAACGATTCAATGTAGCGCAGACGCTTTCACCGCCTCT
CGCATGTGAGCGCATTTCCTAGTTGCTGCACGTATCCGAATCCCACGAAG
AATTTCGAGACGGGGCTTGCGGGCTGTCGAAGAAGGAATTGCCTGGGCAG
ACATTTAGAAGGAAGAAGTGTGTACTTTCGAATACTTCTGCACAAGCACT
TGTGCAGCGTGCAGTACAGTACAGCCACAAGTTGACCTCTGCGACCGAAT
CAGTGTAGGTTTTAGACTTCAGTTCTCTGTGACTCTGCCAGTGTTGATCG
TCGAAAGGCAATTGACAGTCTTTGAGATGTGTAGAGGACGGCCCTGTTTT
CAGTATAACCAGCAGACCAAACACATGCTCGAACAGCATGTATTGGTACG
ATGGGGAAAGCTAACAGGTGTGAATGGGGAGGATGCTGTTCTGGTGAACA
CTTGCACCCCGCTTTCAGCGGATTTCAACGCGTGTTTCAACGGCAGTTGC
TGACCTTCTTCGTACACAAGATAGTATCGCGGGAGACAAAACTTCGGACA
GAGGCTTGGACGGAGTCGCAGGTGCCTTACTGGCATTTTGTGCACACCAG
AAAAAAGTGACCTCCCGCCCGCTCCTCCGATATCACTCACTGGTGTATGG
CGAAACTCGTTTTGAGCCTGGTCTGCACGCATGCCGAAAGTCTTACGACC
TTCAGGTTTGTCTTACTTCTGCAGCGCAACCGCAACCGCCGCCGCGCCAG
TCTCACAAGACACCCCTCGCCCCGTGCCGATCCATTTTTGTCCGCTCCCT
GAAAATCTCCAGTAGTAGCGCGCGAACTCTCGGACTCTTCGCCCCCGGCA
CGAACCCCGCGCCACGAAGTAATCGAGACCGCCGAAGCCGCCACCGTTAC
CGTAGACTTCCCCGGGTGCAAGAAGGAAGATGTAGATGCACAGCTTTCCG
AGGTTGCGGGCAAGAAGACACTCACCATCACGGCCGTCAGGAAGAAGCCT
ACCCCGGTGACCCGAAACAGGAAGGACAGCGAAAACGCAGAAGCGCCGTC
TGCCGGTTCTTCGGAATCTACGGAGAGCACCACAACCTCCTCGGGAACTG
CCGCAGAGGCTCCCGCAGAGCCAGAAGCAGCTGCAACGATGGCTGCTGGG
TCCGCGTCGCCGTCGTTCACGGAGGAGACTTTCGAACTTTCTTTCCTCGT
CGGGGAGGAGGTCGACGTGTCCGCCATCCGCGGCAGTCTCGAGGACGGCG
TTCTGACGCTCGTGCTGCCCAAGCTAGCGCCGGAGCCTCCCGCGGAGCCC
ATCGACATCCCGATCGATTTCAATGGCGGCAACGGCGAGGGGAACGAGGG
AGACAGGGGACAGGACGAGGCTTCGTTGGGACGCCGGGAGGCATCGAAGG
GAGCCACCAGCGATGCTGACGCTGGCACGCACATCAGCTTGTCGTGATGG
TTGTCTTCGTTGTCGGAATATTAAAAGTGTATCTGTGTCCGTGTCTGTGT
CTGTGTCTGTGTCTTGGCGTGATGGTCGGGCGAGAGCAGCGGCCACCTGA
AGCCGAATCGCCGATCCTCGCAGCCCTCGAATGTTGCGTTCCCGAGCGTT
GTAGAAGAAAATAGCTGGGCGAATACGCACTATGATTCCATCCTGTCTGG
TTCGGTGGAGGCGTGTATTTATATGTACAGCCCAACAAGTGACAAGCGTC
AGCATTGTTTGTGAAGTGTTATACTTCGTAACGTGTTTTGTGTCTCGTTG
TGACTTCCTGTTCAAGCTGACGTTGTGAGCTTGCCAGCTTTTCAGCCACG
CGCGCAACGGGAAAAGGCATGCTCCCCTCGGAGGCTTGTTCACGACATCA
AGATTTTTCTAGGCGAGAAGGTGGTGGACCTATAATTGTGCGTGTTCGAC
ACCTTTTTCACTTGTATGAGACATAGCATGAGGTCGAAGTCGATGTGACG
CGATGTACGGTTGGCGGCCTCTATGGCAGGGTCACCTCCGTTGTGTCGTT
TTGATGTTTCGAGCGACCACAGCGTCGAGGTGGGGGAACACAAGCGTAGG
GGGTAACGGTGTGGCACACTTGGGGAGATCCTCATGCGTCCACCATTTTC
GGTAGCAATGGGCGCGGTTCCCCGAAAGGTGTGATTTTTTGTCGCGTGTT
GTGTAGCTGGGAGGGATAAGTCTCGCACACGCTTCGACCACCCCGTATGT
AAAGAGTGGACGTGGATTGAGACGTTTGGACTGTGTCGCACAACGCGTCA
CGACCGTCATCCAGAAAGCTTGGGTAGATGTTGGGTGTTGGGTGGGCGTT
GATCCTCTTTGAACTATTGTTGCTACAACAGTCTTTTGTCGGTTTCTACG
GGAAGTGCGAAAGAAAATAAAATAAAATAAGTGATACTTTTGCAATCATC
CTTCGAGAGGGTGTCTCCCATCTTTAAATGGTCCTTTGTGCGGCAGGGAG
TGGGTGAGACTTCAGTTGACGTCAAGGAGGAGCAGAATTTCATGCCATTT
GATCGTGATGGGTCCCTCTCATGTCTTTCTTTGTTGCTGTTGTTTCCAAA
TGTAGGGGTCACACCAACAGCCACAAGAGACAAGCAACGTTCTGTTGCGT
TGGATTCTTCGTACGCGTATCCCCGCCCATGGGCACGGTCACCACTCACC
CAGGAAAAATGGACCAAGAATCGTTGGCTCTTTGATTTTCACTCCTGAAA
CACAATCTTTTCGCGTACCGCGATCTTCTTGACGCGCGCCGAAGACAAAC
GCCTCGCCCGCGGTTCCACCTTCCTCAATCGATTTGGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1170:2190..5978+

>mRNA_H-canaliculatus_F_contig1170.1510.1 ID=mRNA_H-canaliculatus_F_contig1170.1510.1|Name=mRNA_H-canaliculatus_F_contig1170.1510.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1764bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1170:2190..5978+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTGAGCTCCAACACTCACCTCGCCCTCCTCGCGCTGCTCCTCGGCTC
TCAGCAAGGGGAGTCGCACCGCTACCGCACGCACCAAGGCCGGCATCTCT
TCAGGCCTCTGCCGGCCTTCATGAGCAGCGACGTGGACATGGGGGCATTC
CGCCCGTTCTCATCCTATCCTCGAGGCGGTAGCTTGTTCACCTCCACCGG
CCCGCTGGTGGACATCTTCCAAGAAGTCGTGGGAGACATCAAGAAAGATG
TTGAGCTCCAACACTCACCTCGCCCTCCTCGCGCTGCTCCTCGGCTCTCA
GCAAGGGGAGTCGCACCGCTACCGCACGCACCAAGGCCGGCATCTCTTCA
GGCCTCTGCCGGCCTTCATGAGCAGCGACGTGGACATGGGGGCATTCCGC
CCGTTCTCATCCTATCCTCGAGGCGGTAGCTTGTTCACCTCCACCGGCCC
GCTGGTGGACATCTTCCAAGAAGTCGTGGGAGACATCAAGAAAGTAGTAG
CGCGCGAACTCTCGGACTCTTCGCCCCCGGCACGAACCCCGCGCCACGAA
GTAATCGAGACCGCCGAAGCCGCCACCGTTACCGTAGACTTCCCCGGGTG
CAAGAAGGAAGATGTAGATGCACAGCTTTCCGAGGTTGCGGGCAAGAAGA
CACTCACCATCACGGCCGTCAGGAAGAAGCCTACCCCGGTGACCCGAAAC
AGGAAGGACAGCGAAAACGCAGAAGCGCCGTCTGCCGGTTCTTCGGAATC
TACGGAGAGCACCACAACCTCCTCGGGAACTGCCGCAGAGGCTCCCGCAG
AGCCAGAAGCAGCTGCAACGATGGCTGCTGGGTCCGCGTCGCCGTCGTTC
ACGGAGGAGACTTTCGAACTTTCTTTCCTCGTCGGGGAGGAGGTCGACGT
GTCCGCCATCCGCGGCAGTCTCGAGGACGGCGTTCTGACGCTCGTGCTGC
CCAAGCTAGCGCCGGAGCCTCCCGCGGAGCCCATCGACATCCCGATCGAT
TTCAATGGCGGCAACGGCGAGGGGAACGAGGGAGACAGGGGACAGGACGA
GGCTTCGTTGGGACGCCGGGAGGCATCGAAGGGAGCCACCAGCGATGCTG
ACGCTGGCACGCACATCAGCTTGTCGTGATAGTAGCGCGCGAACTCTCGG
ACTCTTCGCCCCCGGCACGAACCCCGCGCCACGAAGTAATCGAGACCGCC
GAAGCCGCCACCGTTACCGTAGACTTCCCCGGGTGCAAGAAGGAAGATGT
AGATGCACAGCTTTCCGAGGTTGCGGGCAAGAAGACACTCACCATCACGG
CCGTCAGGAAGAAGCCTACCCCGGTGACCCGAAACAGGAAGGACAGCGAA
AACGCAGAAGCGCCGTCTGCCGGTTCTTCGGAATCTACGGAGAGCACCAC
AACCTCCTCGGGAACTGCCGCAGAGGCTCCCGCAGAGCCAGAAGCAGCTG
CAACGATGGCTGCTGGGTCCGCGTCGCCGTCGTTCACGGAGGAGACTTTC
GAACTTTCTTTCCTCGTCGGGGAGGAGGTCGACGTGTCCGCCATCCGCGG
CAGTCTCGAGGACGGCGTTCTGACGCTCGTGCTGCCCAAGCTAGCGCCGG
AGCCTCCCGCGGAGCCCATCGACATCCCGATCGATTTCAATGGCGGCAAC
GGCGAGGGGAACGAGGGAGACAGGGGACAGGACGAGGCTTCGTTGGGACG
CCGGGAGGCATCGAAGGGAGCCACCAGCGATGCTGACGCTGGCACGCACA
TCAGCTTGTCGTGA
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