mRNA_H-canaliculatus_F_contig11696.1503.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11696.1503.1
Unique NamemRNA_H-canaliculatus_F_contig11696.1503.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11696.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11696contigH-canaliculatus_F_contig11696:2..378 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size377
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11696.1503.1prot_H-canaliculatus_F_contig11696.1503.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11696 33..359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928863.0089-UTR-H-canaliculatus_F_contig11696:1..321622928863.0089-UTR-H-canaliculatus_F_contig11696:1..32Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11696 2..32 +
1696845593.164118-UTR-H-canaliculatus_F_contig11696:1..321696845593.164118-UTR-H-canaliculatus_F_contig11696:1..32Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11696 2..32 +
1622928863.0394242-UTR-H-canaliculatus_F_contig11696:359..3781622928863.0394242-UTR-H-canaliculatus_F_contig11696:359..378Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11696 360..378 +
1696845593.1838276-UTR-H-canaliculatus_F_contig11696:359..3781696845593.1838276-UTR-H-canaliculatus_F_contig11696:359..378Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11696 360..378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928863.0233643-CDS-H-canaliculatus_F_contig11696:32..3591622928863.0233643-CDS-H-canaliculatus_F_contig11696:32..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11696 33..359 +
1696845593.17472-CDS-H-canaliculatus_F_contig11696:32..3591696845593.17472-CDS-H-canaliculatus_F_contig11696:32..359Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11696 33..359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11696.1503.1

>prot_H-canaliculatus_F_contig11696.1503.1 ID=prot_H-canaliculatus_F_contig11696.1503.1|Name=mRNA_H-canaliculatus_F_contig11696.1503.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MIWIGFGYRVCQILWFLGDTSPSSSVRMIVPPPLLLPAWSICVSIYISDP
ILPGYHAQGYHTRPTYTSPGYHTREYGLPRCGSWHLGFGSSHPRIVFPTF
TAFTPLFP*
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mRNA from alignment at H-canaliculatus_F_contig11696:2..378+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11696.1503.1 ID=mRNA_H-canaliculatus_F_contig11696.1503.1|Name=mRNA_H-canaliculatus_F_contig11696.1503.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=377bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11696:2..378+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTACAGCGGGGATTTCGGGGGTTTCGCATATGATATGGATAGGATTTG
GGTACCGGGTGTGCCAGATATTATGGTTTCTTGGGGACACCTCTCCGTCT
TCTTCCGTGCGGATGATTGTGCCCCCTCCTCTCCTTCTTCCTGCGTGGTC
TATCTGTGTCTCTATATATATATCTGATCCCATCCTTCCGGGCTACCACG
CCCAGGGTTACCACACCCGACCGACTTACACTTCACCGGGTTACCACACT
CGAGAGTACGGGCTACCACGCTGCGGCTCCTGGCATCTAGGTTTCGGGTC
ATCACACCCGCGGATAGTTTTTCCTACTTTCACGGCTTTCACGCCGCTCT
TTCCTTGATTTCATCATCCACGGAGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11696:2..378+

>mRNA_H-canaliculatus_F_contig11696.1503.1 ID=mRNA_H-canaliculatus_F_contig11696.1503.1|Name=mRNA_H-canaliculatus_F_contig11696.1503.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11696:2..378+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATATGGATAGGATTTGGGTACCGGGTGTGCCAGATATTATGGTTTCT
TGGGGACACCTCTCCGTCTTCTTCCGTGCGGATGATTGTGCCCCCTCCTC
TCCTTCTTCCTGCGTGGTCTATCTGTGTCTCTATATATATATCTGATCCC
ATCCTTCCGGGCTACCACGCCCAGGGTTACCACACCCGACCGACTTACAC
TTCACCGGGTTACCACACTCGAGAGTACGGGCTACCACGCTGCGGCTCCT
GGCATCTAGGTTTCGGGTCATCACACCCGCGGATAGTTTTTCCTACTTTC
ACGGCTTTCACGCCGCTCTTTCCTTGAATGATATGGATAGGATTTGGGTA
CCGGGTGTGCCAGATATTATGGTTTCTTGGGGACACCTCTCCGTCTTCTT
CCGTGCGGATGATTGTGCCCCCTCCTCTCCTTCTTCCTGCGTGGTCTATC
TGTGTCTCTATATATATATCTGATCCCATCCTTCCGGGCTACCACGCCCA
GGGTTACCACACCCGACCGACTTACACTTCACCGGGTTACCACACTCGAG
AGTACGGGCTACCACGCTGCGGCTCCTGGCATCTAGGTTTCGGGTCATCA
CACCCGCGGATAGTTTTTCCTACTTTCACGGCTTTCACGCCGCTCTTTCC
TTGA
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