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Homology
BLAST of mRNA_H-canaliculatus_F_contig11692.1501.1 vs. uniprot
Match: A0A6H5KYH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.020e-14 Identity = 45/109 (41.28%), Postives = 52/109 (47.71%), Query Frame = 1
Query: 502 KAGKPTWCPNHRPGDSHDVKTTXXXXXXXXXXXXXGFKV--------------DRVRRRCRLHKLPGMVXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK 786
K G+P WCP+HRP S DVKT+ + DR+RRRCRLHKL MV CCG G K RFCSEHKQ+GM+NLK
Sbjct: 209 KEGRPMWCPDHRPPGSFDVKTSRCQEPSCLKHPRHDTRSTKAHRQIVSARVQWDRIRRRCRLHKLDDMVDVKSPRCEMAGCRKQPCCGFPGLKPRFCSEHKQDGMLNLK 317
BLAST of mRNA_H-canaliculatus_F_contig11692.1501.1 vs. uniprot
Match: D7FMP7_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 2.360e-10 Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 1
Query: 502 KAGKPTWCPNHRPGDSHDVKTTXXXXXXXXXXXXXGFKVDRVRRRCRLHKLPGMVXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK 786
K G+P WCP+ XXXXXXXXXXXXXG+ DR+RRRCRLHKL MVXXXXXXXXXXXXXXXX CG G K RFCSEHKQ+GM+NLK
Sbjct: 209 KEGRPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLK 303
BLAST of mRNA_H-canaliculatus_F_contig11692.1501.1 vs. uniprot
Match: D7FQ52_ECTSI (EsV-1-7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 2.970e-10 Identity = 51/59 (86.44%), Postives = 51/59 (86.44%), Query Frame = 1
Query: 610 FKVDRVRRRCRLHKLPGMVXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK 786
FK DRVRRRCRL XXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK
Sbjct: 246 FKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK 304
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 71.6 |
| Seed ortholog evalue | 6e-10 |
| Seed eggNOG ortholog | 2880.D7FMP7 |
| EggNOG OGs | 29ZCP@1,2RXW0@2759 |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-01_007460.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 786 |
| Cds size | 786 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928862.1983-CDS-H-canaliculatus_F_contig11692:107..291 | 1622928862.1983-CDS-H-canaliculatus_F_contig11692:107..291 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 108..291 - |
| 1696845593.0633323-CDS-H-canaliculatus_F_contig11692:107..291 | 1696845593.0633323-CDS-H-canaliculatus_F_contig11692:107..291 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 108..291 - |
| 1622928862.2119048-CDS-H-canaliculatus_F_contig11692:719..923 | 1622928862.2119048-CDS-H-canaliculatus_F_contig11692:719..923 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 720..923 - |
| 1696845593.07407-CDS-H-canaliculatus_F_contig11692:719..923 | 1696845593.07407-CDS-H-canaliculatus_F_contig11692:719..923 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 720..923 - |
| 1622928862.223458-CDS-H-canaliculatus_F_contig11692:1679..1831 | 1622928862.223458-CDS-H-canaliculatus_F_contig11692:1679..1831 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 1680..1831 - |
| 1696845593.0840366-CDS-H-canaliculatus_F_contig11692:1679..1831 | 1696845593.0840366-CDS-H-canaliculatus_F_contig11692:1679..1831 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 1680..1831 - |
| 1622928862.2367964-CDS-H-canaliculatus_F_contig11692:2835..2961 | 1622928862.2367964-CDS-H-canaliculatus_F_contig11692:2835..2961 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 2836..2961 - |
| 1696845593.096412-CDS-H-canaliculatus_F_contig11692:2835..2961 | 1696845593.096412-CDS-H-canaliculatus_F_contig11692:2835..2961 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 2836..2961 - |
| 1622928862.2489471-CDS-H-canaliculatus_F_contig11692:3792..3912 | 1622928862.2489471-CDS-H-canaliculatus_F_contig11692:3792..3912 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 3793..3912 - |
| 1696845593.1058056-CDS-H-canaliculatus_F_contig11692:3792..3912 | 1696845593.1058056-CDS-H-canaliculatus_F_contig11692:3792..3912 | Hapterophycus canaliculatus Oshoro5f female | CDS | H-canaliculatus_F_contig11692 3793..3912 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11692.1501.1 >prot_H-canaliculatus_F_contig11692.1501.1 ID=prot_H-canaliculatus_F_contig11692.1501.1|Name=mRNA_H-canaliculatus_F_contig11692.1501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=262bp
SCEVEGCTVKPNYGFEGGNPRFCALHKEEGMKNLARGRCRHNGCLKFASC
GQPGGSPEVCGDHKGPGMINLNGKRCSQPHCTTHASYGIEGTRPRYCAKH
KNSNMMNLARKKCDFDGCLAQPTFNSSGQKKARFCSKHALEGMVEVLDRH
CAQSGCDRQPIYGNSGEKAGKPTWCPNHRPGDSHDVKTTRCQEDNCEKHP
SYGFKVDRVRRRCRLHKLPGMVDVKSPKCERQTCFKQPCCGHLGAKARFC
SEHKQEGMVNLK back to topmRNA from alignment at H-canaliculatus_F_contig11692:108..3912- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-canaliculatus_F_contig11692.1501.1 ID=mRNA_H-canaliculatus_F_contig11692.1501.1|Name=mRNA_H-canaliculatus_F_contig11692.1501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3805bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11692:108..3912- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCGAGGTGGAGGGGTGCACGGTAAAACCCAACTACGGGTTCGAGGG
AGGGAACCCCCGCTTCTGCGCCTTGCATAAGGAGGAGGGGATGAAAAATC
TCGCCAGAGGGCGCTGCAGGGTAAGACGCAAGGCGGCGTTCACGTTCCGG
CTTGTGCTGTCCTATTTCGTTCGCGAGTTTTTCGCGCTGAAACACAGGAA
GTCTGCGTATAACTGAAAGCAAAACAATACCGATATCCTCCGAAGCAGGG
CGAAAAACAGACTAATCATGGTGGCTAGGGATTTTTTATGTCGTGACGGC
CACAATTTTTGTCACGGACAGCAGTGGAATTCGTGTCGTCGTCCGTTGGT
ATCCAAACGTTTGCTGCAGGCCTCTCTCAATCACGCGCCCACCGTCGAAT
TTTTCTGGGATGTCCCGGGGACCTCATCCCCTCGGACGCCTTGTCGGTAT
ACACTCCGCCGTGCTCGTACTCGCAGCGAGGATGCCATGCTGCCGCGCAC
GCGCACCCCAGATATCGTGGCCAGCTGTGGAGGATGGACCACCCACAGCG
AAGAAAGCAGTTATGCCGAATTTTGTAGCCGCAGTCGTGCCTGTACTTCC
ACACCTGCAAACACGACGGGTATCACAGGAAAACGAATACATGGACTGCT
GTCAATCACTTCGCGTGCAAGTGCCTCCGCCCCCCCCCCGCCCCCCCCTC
CGCGCGCGCTGGTACACTCTGGACCATGTTTTGTTCACCATCTGTCGTAC
GCACGAAAGGGCACGGGTCATTACAGCCGCGCCCATAGTGCTCTGTACGA
GCAAGCCACGCTTTGGTACGCCTGCAAGTGACACTGATGCGCGTCGTCTT
CTCCTCCCTTCCCCTCTCCTGTCCTCTCCTCTCCTCTCCTCCCCTTGCTC
GGTCCTTCTCGGGCGGCTTGAAACTCGAAACTGACGGTTCGTGTGCCTCA
GCACAACGGGTGCCTGAAGTTCGCCAGCTGCGGACAGCCCGGAGGGTCGC
CCGAAGTCTGCGGCGACCACAAGGGACCCGGCATGATCAACCTCAACGGG
AAGCGCTGCTCTCAACCACACTGCACGGTACGTACGCTCCTGACTGCGTG
GCAAAGACACAACGACGCGGAACAGCTCCAGCTCCGATGCTTGTGCCGAC
ACGTTTCACGCCTTTCACTCCTTCCTGCACATGCGGGGGAGGTGGAGGGA
TGGTATACTTTTTACACTTTTCACACCAGTCGAGGGGGTTCCTCGGTCAA
ATCGAGTGCGAATTCTGGCCGAAGTGTGTGCCGCGCTTGCCTGCGTGGAT
GTCGCTGGTTTTGTATTCGCCGACGTTGTAGGCGTGCTCTCGCTCCGAGA
AGCTGTTCCTTCAGCCGTGGTTCTTGTTCTACGTGCGTTGTTGGGATGCC
TGAGTCGTTTTCCGTGAGACAGTACAAGACGACCTAATTTCGGACGTGTG
CCAGTTTCTGGGAGGAGGGTGGGGGCTGCCTGATGCAGGGGTGCAGTTGC
CCTCGGGGACCGCCGAGCTGAGCTGAACTGAAGCGCACTGTGGTGCACTG
CTCCGCTCCCCGCACTGATTTCTGCGAGGGACGCACGCGCCCCACATCTG
CGTATGACTTGCATCGTGATACGAAACGAGAACGTCTACTCGTGGTGCTG
TTGAGAATCAAGAAAAGGAGGGCCTGCCGTAGAGCTCGCGCGAAAAACGG
AGTAAAGCGAAGACCACGGCGCGGGATCCAAAGACTGCACGGACGCCGCG
CAGAGGGGGCTAGTAGTGATGCAGTTTGTTTTCGTGCTTCTGACCGGGAG
GCTGCACCTTGCTTACCTTCTCTAGCAGCTGCAGTTGGGCCGGTCCCGTC
CTTCACCGGCTCGTCGTTCGCGCGACCGACTAAATACGCCGGATGCGGCT
GCGAGCAAAGCGAACTATGACTTTGGACGGCAGCAAAACCACCCCACCCA
ACAGCAGCAACAACAACAAACAACAACAACAACAACAAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAAAATCGACGAC
GAGAGTTTGAAAATGCCGTCGATCGGAACAGACGCACGCGAGCTACGGCA
TCGAGGGCACGAGGCCACGATACTGTGCCAAGCACAAGAACAGCAACATG
ATGAATCTGGCGCGAAAGAAGTGCGACTTCGACGGATGCCTGGCGCAACC
CACCTTCAACTCCTCGGGCCAAAAGAAGGCCAGGTGAGAGCACACGACAT
GGCAGGACCGTACGGGGCAGGAAACGAGAGGAAGTACGAGGAATGCTGGT
GCACGTTGGCGTTTGCGGGTGCGGGACGGGGTTGAGGGATCAGCAACTTT
AGGAGAGATGGCGATGAAAGGGGGGGAGACGAGCGACGGGGACGGAGACG
GAGAAAGACGGGGAGGGGCCTAGAAAGAGAGAGAGGGAGAGAGAGAGAGA
GAGAGGCAGAGACAGAGACAGAGAGAGAGAGGGAGGGAGGGAGAGAGAGG
GGGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGACAGACAGACAGACAGA
CAGACAGACAGACAGACAGAGCACCTATCGTACGGCAGGCTAAGGTGTTG
CTGGAGGGAGGCTTTCGGTGCCAAGCGCGAGAGACCACAGGAGGCCCCGC
CGCAGTTGCAGTTGCAGATCGAAAGCAAGAAGGGGAGAAAGTGACATGGG
CAGGTCGGTTCGGTCGGCGACTAAAGTGCACTTTCGCCTGACATTACTCG
ATAGCGGTGTTTTTTCAACAGCCAATCAGGCTGGCGCGGCCTTGATTTTT
CTGTCGGGTGATCACCCAAGGTGCGCAGGGAACCCCCGGCCATGCCGAAC
GAGAACCTCCGGCAGGAAATCGCGTGACACGGAAGTCGAACCCACCGGAA
AATAACAAGCTCGAGCAAAATGATGTAACCGACAGAGCGCGGCTTCGATC
GTTCCTCCCAATGCGTCAAACGCAACCGCCGCGGTGCAGGTTCTGCTCGA
AGCACGCTCTAGAAGGAATGGTGGAAGTCCTGGACAGACACTGCGCGCAG
TCCGGCTGCGACCGCCAGCCCATCTACGGGAACTCCGGGGAAAAGGCGGG
AAAGCCGACGTGGTGTCCCAACCACCGCCCGGGCGACAGCCACGACGTCA
AGACCACGCGGTGTCAGGAGGATAACTGCGAGAAGCACCCCAGGTCTGCC
GTTGTGCTCCTGGCGGTGTGCTTTTGTCACGCCATCGTTTCAATTTGTTT
GTTTGGGGAATGTGGGGGGGGCGGGGGCCTTGGTCCTTCCGATGTCAGGG
CCGCTGTCAGGTGTGGTGATAGTGTTGCCGCTTTTACGCTGTTTTCCGAC
ACCACCTCCGCCTCATCCTTGGAGGCGACTCGGCGCCACGCGGCTGCGCA
CGGGAGAGGGTGGCCCGTCCTGCCGCTTGCTGCCAACCAAACGGCTGCCG
ACCAAACCGCTGCCGGCGTCGGCGAAGAAAGCTGCGTTCTCCGTCCAGAC
TCCAGACGAAGCTGGGGGCTCAAATCTTGTGGTCGACGCACCGCCGTCGT
GCAAACAGTAGTGACGGGTAGCAGCTCACCCCCCACCCTTCCCAAAAAAA
ACACCCGACCCGATCGAACAGCTACGGGTTCAAGGTCGATCGCGTGCGCC
GCCGGTGCCGCTTGCACAAGCTGCCCGGCATGGTGGACGTCAAGAGCCCC
AAGTGCGAGCGGCAGACGTGCTTCAAGCAGCCGTGCTGCGGACACCTCGG
CGCCAAAGCAAGGTTCTGTTCGGAGCACAAGCAGGAGGGCATGGTGAATC
TCAAG back to topCoding sequence (CDS) from alignment at H-canaliculatus_F_contig11692:108..3912- >mRNA_H-canaliculatus_F_contig11692.1501.1 ID=mRNA_H-canaliculatus_F_contig11692.1501.1|Name=mRNA_H-canaliculatus_F_contig11692.1501.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1572bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11692:108..3912- (Hapterophycus canaliculatus Oshoro5f female)
AGCTGCGAGGTGGAGGGGTGCACGGTAAAACCCAACTACGGGTTCGAGGG
AGGGAACCCCCGCTTCTGCGCCTTGCATAAGGAGGAGGGGATGAAAAATC
TCGCCAGAGGGCGCTGCAGGAGCTGCGAGGTGGAGGGGTGCACGGTAAAA
CCCAACTACGGGTTCGAGGGAGGGAACCCCCGCTTCTGCGCCTTGCATAA
GGAGGAGGGGATGAAAAATCTCGCCAGAGGGCGCTGCAGGCACAACGGGT
GCCTGAAGTTCGCCAGCTGCGGACAGCCCGGAGGGTCGCCCGAAGTCTGC
GGCGACCACAAGGGACCCGGCATGATCAACCTCAACGGGAAGCGCTGCTC
TCAACCACACTGCACGCACAACGGGTGCCTGAAGTTCGCCAGCTGCGGAC
AGCCCGGAGGGTCGCCCGAAGTCTGCGGCGACCACAAGGGACCCGGCATG
ATCAACCTCAACGGGAAGCGCTGCTCTCAACCACACTGCACGACGCACGC
GAGCTACGGCATCGAGGGCACGAGGCCACGATACTGTGCCAAGCACAAGA
ACAGCAACATGATGAATCTGGCGCGAAAGAAGTGCGACTTCGACGGATGC
CTGGCGCAACCCACCTTCAACTCCTCGGGCCAAAAGAAGGCCAGACGCAC
GCGAGCTACGGCATCGAGGGCACGAGGCCACGATACTGTGCCAAGCACAA
GAACAGCAACATGATGAATCTGGCGCGAAAGAAGTGCGACTTCGACGGAT
GCCTGGCGCAACCCACCTTCAACTCCTCGGGCCAAAAGAAGGCCAGGTTC
TGCTCGAAGCACGCTCTAGAAGGAATGGTGGAAGTCCTGGACAGACACTG
CGCGCAGTCCGGCTGCGACCGCCAGCCCATCTACGGGAACTCCGGGGAAA
AGGCGGGAAAGCCGACGTGGTGTCCCAACCACCGCCCGGGCGACAGCCAC
GACGTCAAGACCACGCGGTGTCAGGAGGATAACTGCGAGAAGCACCCCAG
GTTCTGCTCGAAGCACGCTCTAGAAGGAATGGTGGAAGTCCTGGACAGAC
ACTGCGCGCAGTCCGGCTGCGACCGCCAGCCCATCTACGGGAACTCCGGG
GAAAAGGCGGGAAAGCCGACGTGGTGTCCCAACCACCGCCCGGGCGACAG
CCACGACGTCAAGACCACGCGGTGTCAGGAGGATAACTGCGAGAAGCACC
CCAGCTACGGGTTCAAGGTCGATCGCGTGCGCCGCCGGTGCCGCTTGCAC
AAGCTGCCCGGCATGGTGGACGTCAAGAGCCCCAAGTGCGAGCGGCAGAC
GTGCTTCAAGCAGCCGTGCTGCGGACACCTCGGCGCCAAAGCAAGGTTCT
GTTCGGAGCACAAGCAGGAGGGCATGGTGAATCTCAAGCTACGGGTTCAA
GGTCGATCGCGTGCGCCGCCGGTGCCGCTTGCACAAGCTGCCCGGCATGG
TGGACGTCAAGAGCCCCAAGTGCGAGCGGCAGACGTGCTTCAAGCAGCCG
TGCTGCGGACACCTCGGCGCCAAAGCAAGGTTCTGTTCGGAGCACAAGCA
GGAGGGCATGGTGAATCTCAAG back to top
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