mRNA_H-canaliculatus_F_contig11690.1499.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11690.1499.1
Unique NamemRNA_H-canaliculatus_F_contig11690.1499.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11690.1499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11690contigH-canaliculatus_F_contig11690:249..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size740
Cds size402
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11690.1499.1prot_H-canaliculatus_F_contig11690.1499.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11690 331..732 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.060285-UTR-H-canaliculatus_F_contig11690:248..3301622928862.060285-UTR-H-canaliculatus_F_contig11690:248..330Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11690 249..330 +
1696845593.007036-UTR-H-canaliculatus_F_contig11690:248..3301696845593.007036-UTR-H-canaliculatus_F_contig11690:248..330Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11690 249..330 +
1622928862.0864668-UTR-H-canaliculatus_F_contig11690:732..9881622928862.0864668-UTR-H-canaliculatus_F_contig11690:732..988Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11690 733..988 +
1696845593.0242436-UTR-H-canaliculatus_F_contig11690:732..9881696845593.0242436-UTR-H-canaliculatus_F_contig11690:732..988Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11690 733..988 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928862.076273-CDS-H-canaliculatus_F_contig11690:330..7321622928862.076273-CDS-H-canaliculatus_F_contig11690:330..732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11690 331..732 +
1696845593.0158641-CDS-H-canaliculatus_F_contig11690:330..7321696845593.0158641-CDS-H-canaliculatus_F_contig11690:330..732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11690 331..732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11690.1499.1

>prot_H-canaliculatus_F_contig11690.1499.1 ID=prot_H-canaliculatus_F_contig11690.1499.1|Name=mRNA_H-canaliculatus_F_contig11690.1499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
MRRQQQTLSRQSAAAFSFSSLRFCHDCAPELLRVTFGACAVGDRESGGAR
RFRTGVAPRVTQRRSWCRCAPHQRRLSDAFRWEVVVVLDSASRDSKQPVA
SCCSGVDSPIAGQFGKGAFGSLVFPGKGRRCAL*
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mRNA from alignment at H-canaliculatus_F_contig11690:249..988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11690.1499.1 ID=mRNA_H-canaliculatus_F_contig11690.1499.1|Name=mRNA_H-canaliculatus_F_contig11690.1499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=740bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11690:249..988+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGGATTGTCGCGGCAAAATAGCGCCAACCGAAAACACCGGGTGAGCAA
ACAAACAAACCTCGTTGAGGTCGGAAACCTTGATGAGGCGGCAGCAGCAG
ACCTTGTCGAGGCAGTCCGCAGCAGCGTTTAGTTTTTCGTCGCTCCGTTT
TTGTCACGACTGCGCCCCCGAGCTGCTTCGAGTGACGTTCGGAGCGTGTG
CCGTAGGCGACCGCGAAAGTGGTGGTGCGCGGCGCTTTCGGACGGGGGTC
GCCCCGCGTGTGACGCAACGTCGCAGCTGGTGCCGATGCGCGCCCCACCA
GCGGAGGCTGTCAGATGCTTTTCGGTGGGAGGTAGTGGTGGTGCTAGACA
GTGCGTCTCGTGACTCGAAGCAGCCTGTCGCATCGTGCTGTTCCGGGGTT
GATTCTCCAATCGCTGGGCAATTTGGAAAGGGAGCGTTCGGTTCTCTCGT
TTTTCCGGGTAAGGGCCGCCGCTGTGCGCTGTGAGGACAGGTTTTTTGCC
CAGGGGACACTACAAACCCGCCCCGTACCCTTTGCTGTGACGAACAGAAT
GGAGGAACAGACCACCCTTGCACAACCTTGGCAGACCCGGGAGGCTCGGG
GTAAATTGGCGTGTACGACAATATGGCGGCGGCCACACATGAAAACAGCA
CTAGCAAAGAAGAGTCGTGTGCCTGCCTATCGTCTTGCAGGTGGCTGCTC
TCGGAGAGCTCGCTCAAGGTCCACGGGTTACAACACCGTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11690:249..988+

>mRNA_H-canaliculatus_F_contig11690.1499.1 ID=mRNA_H-canaliculatus_F_contig11690.1499.1|Name=mRNA_H-canaliculatus_F_contig11690.1499.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11690:249..988+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCGGCAGCAGCAGACCTTGTCGAGGCAGTCCGCAGCAGCGTTTAG
TTTTTCGTCGCTCCGTTTTTGTCACGACTGCGCCCCCGAGCTGCTTCGAG
TGACGTTCGGAGCGTGTGCCGTAGGCGACCGCGAAAGTGGTGGTGCGCGG
CGCTTTCGGACGGGGGTCGCCCCGCGTGTGACGCAACGTCGCAGCTGGTG
CCGATGCGCGCCCCACCAGCGGAGGCTGTCAGATGCTTTTCGGTGGGAGG
TAGTGGTGGTGCTAGACAGTGCGTCTCGTGACTCGAAGCAGCCTGTCGCA
TCGTGCTGTTCCGGGGTTGATTCTCCAATCGCTGGGCAATTTGGAAAGGG
AGCGTTCGGTTCTCTCGTTTTTCCGGGTAAGGGCCGCCGCTGTGCGCTGT
GAATGAGGCGGCAGCAGCAGACCTTGTCGAGGCAGTCCGCAGCAGCGTTT
AGTTTTTCGTCGCTCCGTTTTTGTCACGACTGCGCCCCCGAGCTGCTTCG
AGTGACGTTCGGAGCGTGTGCCGTAGGCGACCGCGAAAGTGGTGGTGCGC
GGCGCTTTCGGACGGGGGTCGCCCCGCGTGTGACGCAACGTCGCAGCTGG
TGCCGATGCGCGCCCCACCAGCGGAGGCTGTCAGATGCTTTTCGGTGGGA
GGTAGTGGTGGTGCTAGACAGTGCGTCTCGTGACTCGAAGCAGCCTGTCG
CATCGTGCTGTTCCGGGGTTGATTCTCCAATCGCTGGGCAATTTGGAAAG
GGAGCGTTCGGTTCTCTCGTTTTTCCGGGTAAGGGCCGCCGCTGTGCGCT
GTGA
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