mRNA_H-canaliculatus_F_contig11681.1490.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11681.1490.1
Unique NamemRNA_H-canaliculatus_F_contig11681.1490.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11681.1490.1 vs. uniprot
Match: A0A6H5JGJ4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.390e-8
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = -2 
Query:  159 AAGPAPGSGALTTRLREFLRTPAFVSWVQALRRAG 263
            A GP PGSGALT RLREFLRTPAF+SWVQ LRR G
Sbjct:  911 AVGPTPGSGALTCRLREFLRTPAFLSWVQKLRRPG 945
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BLAST of mRNA_H-canaliculatus_F_contig11681.1490.1 vs. uniprot
Match: D8LCP6_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.110e-7
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = -2 
Query:  159 AAGPAPGSGALTTRLREFLRTPAFVSWVQALRRAG 263
            A GP PGSGALT RLREF+RTPAF+SWVQ LRR G
Sbjct: 1074 AVGPTPGSGALTCRLREFVRTPAFLSWVQELRRPG 1108
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11681.1490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGJ4_9PHAE4.390e-882.86Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCP6_ECTSI1.110e-780.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11681contigH-canaliculatus_F_contig11681:985..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.5438414-CDS-H-canaliculatus_F_contig11681:984..14281622928860.5438414-CDS-H-canaliculatus_F_contig11681:984..1428Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 985..1428 +
1696845592.45018-CDS-H-canaliculatus_F_contig11681:984..14281696845592.45018-CDS-H-canaliculatus_F_contig11681:984..1428Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11681 985..1428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11681.1490.1prot_H-canaliculatus_F_contig11681.1490.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11681 985..1428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11681.1490.1

>prot_H-canaliculatus_F_contig11681.1490.1 ID=prot_H-canaliculatus_F_contig11681.1490.1|Name=mRNA_H-canaliculatus_F_contig11681.1490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
PSTALSSTAARARSAVCPPLPPSVSEKGCEISLSPPSQSSQPRPPPPLPP
PPPPARRSACTHETNAGVRRNSRRRVVKAPDPGAGPAAVVSRCGLPPSRG
GSASALPLYPPATPPEPLWPPLLPPLSSPLPLSLPDASFCLARSPVLP
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mRNA from alignment at H-canaliculatus_F_contig11681:985..1430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11681.1490.1 ID=mRNA_H-canaliculatus_F_contig11681.1490.1|Name=mRNA_H-canaliculatus_F_contig11681.1490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=446bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:985..1430+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTCTACAGCACTCTCGTCCACGGCGGCGAGAGCCCGGTCCGCCGTGTG
CCCCCCTCTTCCGCCCAGCGTTTCAGAAAAGGGGTGCGAGATATCACTAT
CGCCGCCATCGCAGTCGTCGCAACCACGGCCACCACCGCCGCTGCCGCCG
CCGCCGCCGCCCGCACGCCGCAGCGCTTGCACCCACGAGACAAACGCCGG
CGTCCGAAGGAACTCCCGCAGGCGGGTCGTCAAGGCTCCGGACCCCGGAG
CGGGACCCGCCGCCGTCGTGTCCCGTTGCGGGCTACCTCCGTCACGCGGC
GGTTCCGCGTCTGCCCTGCCGCTGTACCCGCCGGCCACGCCGCCGGAGCC
GCTTTGGCCACCGTTGCTTCCGCCGCTGTCATCCCCGCTCCCGCTCTCGT
TACCCGACGCCAGCTTCTGCCTCGCGCGGTCACCCGTGCTGCCCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11681:985..1430+

>mRNA_H-canaliculatus_F_contig11681.1490.1 ID=mRNA_H-canaliculatus_F_contig11681.1490.1|Name=mRNA_H-canaliculatus_F_contig11681.1490.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11681:985..1430+ (Hapterophycus canaliculatus Oshoro5f female)
CCCTCTACAGCACTCTCGTCCACGGCGGCGAGAGCCCGGTCCGCCGTGTG
CCCCCCTCTTCCGCCCAGCGTTTCAGAAAAGGGGTGCGAGATATCACTAT
CGCCGCCATCGCAGTCGTCGCAACCACGGCCACCACCGCCGCTGCCGCCG
CCGCCGCCGCCCGCACGCCGCAGCGCTTGCACCCACGAGACAAACGCCGG
CGTCCGAAGGAACTCCCGCAGGCGGGTCGTCAAGGCTCCGGACCCCGGAG
CGGGACCCGCCGCCGTCGTGTCCCGTTGCGGGCTACCTCCGTCACGCGGC
GGTTCCGCGTCTGCCCTGCCGCTGTACCCGCCGGCCACGCCGCCGGAGCC
GCTTTGGCCACCGTTGCTTCCGCCGCTGTCATCCCCGCTCCCGCTCTCGT
TACCCGACGCCAGCTTCTGCCTCGCGCGGTCACCCGTGCTGCCCCCCTCT
ACAGCACTCTCGTCCACGGCGGCGAGAGCCCGGTCCGCCGTGTGCCCCCC
TCTTCCGCCCAGCGTTTCAGAAAAGGGGTGCGAGATATCACTATCGCCGC
CATCGCAGTCGTCGCAACCACGGCCACCACCGCCGCTGCCGCCGCCGCCG
CCGCCCGCACGCCGCAGCGCTTGCACCCACGAGACAAACGCCGGCGTCCG
AAGGAACTCCCGCAGGCGGGTCGTCAAGGCTCCGGACCCCGGAGCGGGAC
CCGCCGCCGTCGTGTCCCGTTGCGGGCTACCTCCGTCACGCGGCGGTTCC
GCGTCTGCCCTGCCGCTGTACCCGCCGGCCACGCCGCCGGAGCCGCTTTG
GCCACCGTTGCTTCCGCCGCTGTCATCCCCGCTCCCGCTCTCGTTACCCG
ACGCCAGCTTCTGCCTCGCGCGGTCACCCGTGCTGCCC
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