mRNA_H-canaliculatus_F_contig1168.1489.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1168.1489.1
Unique NamemRNA_H-canaliculatus_F_contig1168.1489.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1168.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1168contigH-canaliculatus_F_contig1168:25503..25894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size392
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.9091086-CDS-H-canaliculatus_F_contig1168:25502..258261622928859.9091086-CDS-H-canaliculatus_F_contig1168:25502..25826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 25503..25826 +
1696845592.1969311-CDS-H-canaliculatus_F_contig1168:25502..258261696845592.1969311-CDS-H-canaliculatus_F_contig1168:25502..25826Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1168 25503..25826 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.9298615-UTR-H-canaliculatus_F_contig1168:25826..258941622928859.9298615-UTR-H-canaliculatus_F_contig1168:25826..25894Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1168 25827..25894 +
1696845592.209017-UTR-H-canaliculatus_F_contig1168:25826..258941696845592.209017-UTR-H-canaliculatus_F_contig1168:25826..25894Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1168 25827..25894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1168.1489.1prot_H-canaliculatus_F_contig1168.1489.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1168 25503..25826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1168.1489.1

>prot_H-canaliculatus_F_contig1168.1489.1 ID=prot_H-canaliculatus_F_contig1168.1489.1|Name=mRNA_H-canaliculatus_F_contig1168.1489.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=108bp
PAFASWITPCLLSPSLSGEGGFAACVSTLYVLVCSAVPLFFGYVHEKAVR
VSLTEAFPSAVHFQQLYSYAPQLLTHSSESRRVLLVVADPRRPPGKPRGR
VKRQSRE*
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mRNA from alignment at H-canaliculatus_F_contig1168:25503..25894+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1168.1489.1 ID=mRNA_H-canaliculatus_F_contig1168.1489.1|Name=mRNA_H-canaliculatus_F_contig1168.1489.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1168:25503..25894+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGCATTTGCGTCGTGGATTACTCCGTGTCTCCTGTCTCCTAGCCTTTC
GGGTGAGGGGGGTTTCGCAGCGTGTGTCTCAACTCTCTACGTGCTTGTCT
GTTCGGCGGTGCCCCTCTTCTTCGGCTATGTGCACGAAAAGGCGGTTCGT
GTCTCGCTTACAGAAGCATTCCCTTCGGCTGTTCACTTTCAGCAGCTCTA
CTCCTACGCCCCGCAGTTACTGACACACAGCAGTGAGTCAAGACGTGTGT
TGTTGGTTGTCGCCGACCCGCGGCGGCCACCCGGGAAACCAAGAGGTAGA
GTCAAGAGACAGAGTCGAGAGTGATCCCCTTGGCTCGTTACACCTCCAAG
TATCTAGAGTCGAATGCCCGGGTGGAGCCAGTAGACTCCGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1168:25503..25894+

>mRNA_H-canaliculatus_F_contig1168.1489.1 ID=mRNA_H-canaliculatus_F_contig1168.1489.1|Name=mRNA_H-canaliculatus_F_contig1168.1489.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=648bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1168:25503..25894+ (Hapterophycus canaliculatus Oshoro5f female)
CCCGCATTTGCGTCGTGGATTACTCCGTGTCTCCTGTCTCCTAGCCTTTC
GGGTGAGGGGGGTTTCGCAGCGTGTGTCTCAACTCTCTACGTGCTTGTCT
GTTCGGCGGTGCCCCTCTTCTTCGGCTATGTGCACGAAAAGGCGGTTCGT
GTCTCGCTTACAGAAGCATTCCCTTCGGCTGTTCACTTTCAGCAGCTCTA
CTCCTACGCCCCGCAGTTACTGACACACAGCAGTGAGTCAAGACGTGTGT
TGTTGGTTGTCGCCGACCCGCGGCGGCCACCCGGGAAACCAAGAGGTAGA
GTCAAGAGACAGAGTCGAGAGTGACCCGCATTTGCGTCGTGGATTACTCC
GTGTCTCCTGTCTCCTAGCCTTTCGGGTGAGGGGGGTTTCGCAGCGTGTG
TCTCAACTCTCTACGTGCTTGTCTGTTCGGCGGTGCCCCTCTTCTTCGGC
TATGTGCACGAAAAGGCGGTTCGTGTCTCGCTTACAGAAGCATTCCCTTC
GGCTGTTCACTTTCAGCAGCTCTACTCCTACGCCCCGCAGTTACTGACAC
ACAGCAGTGAGTCAAGACGTGTGTTGTTGGTTGTCGCCGACCCGCGGCGG
CCACCCGGGAAACCAAGAGGTAGAGTCAAGAGACAGAGTCGAGAGTGA
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