mRNA_H-canaliculatus_F_contig11647.1451.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11647.1451.1
Unique NamemRNA_H-canaliculatus_F_contig11647.1451.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11647.1451.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 4.260e-108
Identity = 183/297 (61.62%), Postives = 204/297 (68.69%), Query Frame = 1 
Query:    1 SLVVYGGDDQTTNLVGGLGDLWVYSPRGTKSYLHADTEDYS--NSDVRDEWKAYVREGSHPGARREPSLTMINSTLLLQGGKVDLGEWNEQCDSRFFLLDLGDPDGVWREGPAFPGECGLGQTMDTVNVT-RTDDSGKTVPLAVVFGGCKWDSAGVFTCSNDLYAYDPGANTWSEIIPESDEDAFACTADDTEVGPELSHTQHPASMSGSGNPGNSSGVGGEDAGEDATDGGSSESIGEKNKKEKKAVCPGASTSRPLGRHAHASAYIESKADGVNALFIFGGRENADDLAPLGDLW 882
            SLVVYGGDDQTTN +GGLGDLWV+SP GT+S LHA  +DYS  + D R EW  Y R G  PG RREPSLTM+NSTLLLQGGKV+ GE NE+CDSRFFL+DLGDP G WREGP+FPGECG+G TM+TVN+T +    G+    AVVFGGCK    GVF+CSNDLYAYD   N W EI+P+SD DAFAC ADDT   P L     PA+                                    K KKAVCPG STSRPLGRHAHASAYIESK D +NALFIFGGREN D+L PLGDLW
Sbjct:  194 SLVVYGGDDQTTNQMGGLGDLWVFSPGGTRSRLHASEKDYSYDSLDRRSEWTEYSRAGKLPGERREPSLTMVNSTLLLQGGKVEDGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMNTVNITSKHTTDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPAL----RPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDK-KKAVCPGVSTSRPLGRHAHASAYIESKTDNMNALFIFGGRENMDELTPLGDLW 485
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BLAST of mRNA_H-canaliculatus_F_contig11647.1451.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 1.550e-104
Identity = 168/297 (56.57%), Postives = 186/297 (62.63%), Query Frame = 1 
Query:    1 SLVVYGGDDQTTNLVGGLGDLWVYSPRGTKSYLHADTEDYSN--SDVRDEWKAYVREGSHPGARREPSLTMINSTLLLQGGKVDLGEWNEQCDSRFFLLDLGDPDGVWREGPAFPGECGLGQTMDTVNVTRTDDS-GKTVPLAVVFGGCKWDSAGVFTCSNDLYAYDPGANTWSEIIPESDEDAFACTADDTEVGPELSHTQHPASMSGSGNPGNSSGVGGEDAGEDATDGGSSESIGEKNKKEKKAVCPGASTSRPLGRHAHASAYIESKADGVNALFIFGGRENADDLAPLGDLW 882
            SLVVYGGDDQTTN VGGLGDLWV+SPRG++S LHA  +DYS   SD R EW  Y R G  PG RREPSL M+NSTLLLQGGK++ GE NE+CDSRFFL+DLGDP G WREGP+FPGECG+G TMDTVN+TR   + G+    AVVFGGCK    GVF+CSNDLYAYD   N W EI+P+SD DAFAC ADDT   P L                                                             RH HASAYIESK D +NALFIFGGREN DDL PLGDLW
Sbjct:  100 SLVVYGGDDQTTNQVGGLGDLWVFSPRGSRSRLHASEKDYSYDASDRRSEWTEYRRTGKLPGERREPSLAMVNSTLLLQGGKMEDGESNERCDSRFFLVDLGDPQGEWREGPSFPGECGIGGTMDTVNITRKHTADGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRWEEIVPKSDADAFACEADDTGESPAL-------------------------------------------------------------RHGHASAYIESKTDNMNALFIFGGRENMDDLTPLGDLW 335
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11647.1451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHR5_9PHAE4.260e-10861.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1X6_ECTSI1.550e-10456.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11647contigH-canaliculatus_F_contig11647:591..3918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size885
Cds size885
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11647.1451.1prot_H-canaliculatus_F_contig11647.1451.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11647 591..3918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.519525-CDS-H-canaliculatus_F_contig11647:590..7401622928856.519525-CDS-H-canaliculatus_F_contig11647:590..740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 591..740 +
1696845590.7491236-CDS-H-canaliculatus_F_contig11647:590..7401696845590.7491236-CDS-H-canaliculatus_F_contig11647:590..740Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 591..740 +
1622928856.5341945-CDS-H-canaliculatus_F_contig11647:1645..17381622928856.5341945-CDS-H-canaliculatus_F_contig11647:1645..1738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 1646..1738 +
1696845590.7579453-CDS-H-canaliculatus_F_contig11647:1645..17381696845590.7579453-CDS-H-canaliculatus_F_contig11647:1645..1738Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 1646..1738 +
1622928856.5477598-CDS-H-canaliculatus_F_contig11647:2348..25131622928856.5477598-CDS-H-canaliculatus_F_contig11647:2348..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 2349..2513 +
1696845590.766106-CDS-H-canaliculatus_F_contig11647:2348..25131696845590.766106-CDS-H-canaliculatus_F_contig11647:2348..2513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 2349..2513 +
1622928856.561098-CDS-H-canaliculatus_F_contig11647:3198..33461622928856.561098-CDS-H-canaliculatus_F_contig11647:3198..3346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 3199..3346 +
1696845590.7745047-CDS-H-canaliculatus_F_contig11647:3198..33461696845590.7745047-CDS-H-canaliculatus_F_contig11647:3198..3346Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 3199..3346 +
1622928856.5791194-CDS-H-canaliculatus_F_contig11647:3589..39181622928856.5791194-CDS-H-canaliculatus_F_contig11647:3589..3918Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 3590..3918 +
1696845590.782808-CDS-H-canaliculatus_F_contig11647:3589..39181696845590.782808-CDS-H-canaliculatus_F_contig11647:3589..3918Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11647 3590..3918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11647.1451.1

>prot_H-canaliculatus_F_contig11647.1451.1 ID=prot_H-canaliculatus_F_contig11647.1451.1|Name=mRNA_H-canaliculatus_F_contig11647.1451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=295bp
SLVVYGGDDQTTNLVGGLGDLWVYSPRGTKSYLHADTEDYSNSDVRDEWK
AYVREGSHPGARREPSLTMINSTLLLQGGKVDLGEWNEQCDSRFFLLDLG
DPDGVWREGPAFPGECGLGQTMDTVNVTRTDDSGKTVPLAVVFGGCKWDS
AGVFTCSNDLYAYDPGANTWSEIIPESDEDAFACTADDTEVGPELSHTQH
PASMSGSGNPGNSSGVGGEDAGEDATDGGSSESIGEKNKKEKKAVCPGAS
TSRPLGRHAHASAYIESKADGVNALFIFGGRENADDLAPLGDLW*
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mRNA from alignment at H-canaliculatus_F_contig11647:591..3918+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11647.1451.1 ID=mRNA_H-canaliculatus_F_contig11647.1451.1|Name=mRNA_H-canaliculatus_F_contig11647.1451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3328bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11647:591..3918+ (Hapterophycus canaliculatus Oshoro5f female)
AGTCTGGTGGTGTACGGGGGGGACGACCAGACCACGAACCTGGTGGGCGG
CCTGGGGGACCTGTGGGTGTACAGCCCCAGGGGCACCAAGTCGTATTTGC
ACGCGGACACCGAGGACTACAGCAACTCTGATGTCAGGGACGAGTGGAAG
GTGAGCGAAGGTTTTCGGCAGAGGGAAAAACGGGAGGGGGGGGGAGGGAG
GGAGGGAGACGAAGAAAACGCCTGATTTTCGGGGAAACCGGGCGGCTCGC
CCGTTCACGTCGATCGGGGTCGGTCGCTGCTGGTGGCTTTGTAGACATGT
CGGCTCTGGCGCAGCAGGGAATATCGGGCACCACAGAGTTAGAGTCCTTG
TGGGGGCGGCAAGCTTGAGGCGCCGGTCGTTAAGTCACCCGGGCTTTCGT
GGATCACCTGGATGCAGGAGCGACCCCGACGGCGGGGAAGTAGTGGCGGT
GCTACTGTACCTAGATGGCGAGAAGACGGGGACAAGCGCCGCAAGTCAAG
CGACGAGAAAAAGCGGCACATCAGTCTTGCGTTTTCGTGGGCTCGAGTCG
CTTTTCATGAAACGCACACTCGCATGCGGAGGAGTTGCGTTCGGATCGCC
GCCACCCGCTCGTTAAGAGGCGGCCTGGTGTAGGCGGCTCTCAGCGAAGA
GAGTGTCGCGTGTGGGCGGGCGACACGTACCGGCGGGGCGGCTTGAACAG
GATGGCGACACATGCGCTCGAAGAACTCGTCGGCGAATAAAAATAGTTGG
CAAATGATACGGGGTACCGCCGCAGCAGCTACGCAGCGACCCGTTTCCCT
GCCTCATGCTGCTATCCGCGGGATCACAGCCGAGCCTTCTTGCGCCCGGA
AGAACGCCAGGTTGCCATCCGCCACCCCGTCCTCGGGCTGCTTCTCTTGC
GACCCTTGGTCCCGCTTGTCCCTCGCCCTCCTCGCCTCCTTTCTCTCTCC
GTTCCCGCCCGCACGCCTGCGCTGCACGCTCATGCCTCCGCGGCCTCTCG
CCCCGTTTTCCCTCCCCCTCTCCCTCACCTCTCCCTTGAACCTCGGACGA
CAAAGGCGTACGTTCGAGAGGGTTCCCACCCCGGAGCACGGCGAGAGCCC
TCGCTGACGATGATCAACTCCACGCTCTTGCTGCAGGGGGGCAAGGTGGT
GAGTCACTCCGGCCTGAGGCGCGAACTGGCCCCGGTCGTCGCCGCGTTCC
GCACGTGCCCGTCTCGTTCGCGGCTGCTCGATCGGCGTCCGAGCCGAGTT
CGGGGCTGTCTTTTCCTCCCCACTTGTCTGGACGCCAAACAAGCGTTCTG
ACCGCGACCGTGATTTTCTTCCCTTTTTCTTCGAGACTGTTTGTGATGGC
GGCCGGGGCGGGGAGACGGAGAGTCGAAACCCGTGTCTCCTTGTCTCGAC
ATGCTGCGGCCGGCGTTTTTTTTTGCCTGCTCGTATGTCTCGCTCACGTT
TTGGTCCGGTTGATCGTTGCTGCTTTTTGGCCAAGGGAAGGAAGAGGCGC
GCGGGGAGAATCACCGTGCTCCATGCTCGGAGTTCTTCCTCTCTCGACGT
TTTTCGTCCCACGTGTGTTGTAGTCGCTCCATGCTCGGAGTTCTTCCTCT
CTCGCCATTTTTTTCGTCCCACGTGCGTTGTAGGTGCGGCCGACGCTGTC
CTCTCTTCTGTCTTCTTCTCCTCTTTTCCTTTCTTTTCTGACTCCATCAA
TCCTCGTCTGCTCGAACTGCTGTCCGCGGGGTCGGATGCGGCGGGGCAGG
CGGAGCAGGACCTCGGAGAGTGGAACGAGCAGTGCGACTCTCGTTTCTTC
CTGCTTGACCTCGGCGACCCGGACGGTGTCTGGAGGGAGGGCCCGGCCTT
TCCGGGAGAGTGCGGCTTGGGACAGACGATGGACACCGTCAACGTCACCC
GTACGGATGACAGCGGGAAGACAGTCGAGGTGAGAATCATCCCCCCACCT
CCCACTTCTACATCAGCCCCCGCACCCTTCATGAGACGCTTGTTTGCTTG
TATAAAGCGCACGTGGATGTTTGGGTGCGCCTTTGGCGTTTTCGGATTTT
TCTGGTCTTTCGCTTCTTCTCCCTTTTGGGGAGGGGGGGCGGTCTTCGAC
ACTGTCGTGCTGCTGCCTCGTCGTCTTCGAGGCAACCCTTTTCGGCGGGC
AACGAGGTGATCGAGGGGGGGGCTTTTTCTTCGGCATCGCGGCCTTTCTT
TCTCGTTCCGTGGCGAGGACCCCGGTATCCGATTGGCGTTCGTTTCCCCG
TTCGTCATGCGCGCTCGCGTGTGTCTTCTTTCCCGTGCGATTCTTCCGGA
CGGTGCAAGTCAAGGCACTAAACGTGACCGCCGTGGTCAACGTGCCAGAA
GCACATGTTGCTGTGTTTGTTCGTGGTGGTGTTGGTGCTTCCGCCGCCGC
TGCTGGTGCTGGTATTGCGGGTGTGGTACTGCTTCTCTTTTTTTCTGCCG
GCAGGCACCGCGTTTGTGAAGGTAGCCTTTCCGCCCGTCGTTGTACTCGC
GTCGAGCGATCAGCCGTTTCCGCAGCCAAACCGACACCGGCGCACACCGA
GCCTGAGCCCTTGGACCGACCCCACGCCCCGCCGTCGCGTCGCTCGCGTC
GGCCTCAGGTGCCCTTGGCCGTGGTCTTCGGGGGCTGCAAGTGGGACTCG
GCGGGGGTGTTCACGTGCTCCAACGACCTGTACGCGTACGACCCCGGTGC
TAACACCTGGTCGGAGATCATCCCGGAGAGCGATGAGGACGCCTTCGCCT
GCACGGGTGAGTCGGGAGTCGTCCATGCGCTTCAGCAGGTGGACGGAGAT
CGGTGGGCAAGGCGGTGGCGCTCGAGAGCAGGTCTCGGCCTTCCGCCGAA
CCGCTCCGCTCCGCGCCGCGTCTCGCTTAGACAATACCAAAACAGTTTCT
CCTCCCTCTTGAGCGATTCTTCGTGTCGTTGCGTTGCGCCGCGCGTGTGT
GACACGACGCTCTCCCTATCTGCGGTGTCCCCCCTCCCCCGGCGCGCAGC
CGACGACACCGAGGTGGGTCCCGAGCTTTCTCACACCCAGCACCCCGCTA
GCATGAGCGGCAGCGGCAATCCAGGCAACAGCAGCGGTGTCGGCGGCGAG
GATGCGGGAGAGGACGCAACCGACGGGGGGAGCAGCGAGTCGATCGGCGA
GAAGAATAAGAAGGAGAAGAAGGCGGTATGCCCGGGGGCGTCGACGTCGC
GTCCCCTGGGCAGGCACGCCCACGCGTCGGCGTACATCGAATCCAAGGCG
GACGGCGTGAACGCGCTGTTCATCTTCGGGGGCCGAGAGAACGCGGATGA
TCTAGCTCCGCTGGGGGATCTCTGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11647:591..3918+

>mRNA_H-canaliculatus_F_contig11647.1451.1 ID=mRNA_H-canaliculatus_F_contig11647.1451.1|Name=mRNA_H-canaliculatus_F_contig11647.1451.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1770bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11647:591..3918+ (Hapterophycus canaliculatus Oshoro5f female)
AGTCTGGTGGTGTACGGGGGGGACGACCAGACCACGAACCTGGTGGGCGG
CCTGGGGGACCTGTGGGTGTACAGCCCCAGGGGCACCAAGTCGTATTTGC
ACGCGGACACCGAGGACTACAGCAACTCTGATGTCAGGGACGAGTGGAAG
AGTCTGGTGGTGTACGGGGGGGACGACCAGACCACGAACCTGGTGGGCGG
CCTGGGGGACCTGTGGGTGTACAGCCCCAGGGGCACCAAGTCGTATTTGC
ACGCGGACACCGAGGACTACAGCAACTCTGATGTCAGGGACGAGTGGAAG
GCGTACGTTCGAGAGGGTTCCCACCCCGGAGCACGGCGAGAGCCCTCGCT
GACGATGATCAACTCCACGCTCTTGCTGCAGGGGGGCAAGGTGGCGTACG
TTCGAGAGGGTTCCCACCCCGGAGCACGGCGAGAGCCCTCGCTGACGATG
ATCAACTCCACGCTCTTGCTGCAGGGGGGCAAGGTGGACCTCGGAGAGTG
GAACGAGCAGTGCGACTCTCGTTTCTTCCTGCTTGACCTCGGCGACCCGG
ACGGTGTCTGGAGGGAGGGCCCGGCCTTTCCGGGAGAGTGCGGCTTGGGA
CAGACGATGGACACCGTCAACGTCACCCGTACGGATGACAGCGGGAAGAC
AGACCTCGGAGAGTGGAACGAGCAGTGCGACTCTCGTTTCTTCCTGCTTG
ACCTCGGCGACCCGGACGGTGTCTGGAGGGAGGGCCCGGCCTTTCCGGGA
GAGTGCGGCTTGGGACAGACGATGGACACCGTCAACGTCACCCGTACGGA
TGACAGCGGGAAGACAGTGCCCTTGGCCGTGGTCTTCGGGGGCTGCAAGT
GGGACTCGGCGGGGGTGTTCACGTGCTCCAACGACCTGTACGCGTACGAC
CCCGGTGCTAACACCTGGTCGGAGATCATCCCGGAGAGCGATGAGGACGC
CTTCGCCTGCACGGGTGCCCTTGGCCGTGGTCTTCGGGGGCTGCAAGTGG
GACTCGGCGGGGGTGTTCACGTGCTCCAACGACCTGTACGCGTACGACCC
CGGTGCTAACACCTGGTCGGAGATCATCCCGGAGAGCGATGAGGACGCCT
TCGCCTGCACGGCCGACGACACCGAGGTGGGTCCCGAGCTTTCTCACACC
CAGCACCCCGCTAGCATGAGCGGCAGCGGCAATCCAGGCAACAGCAGCGG
TGTCGGCGGCGAGGATGCGGGAGAGGACGCAACCGACGGGGGGAGCAGCG
AGTCGATCGGCGAGAAGAATAAGAAGGAGAAGAAGGCGGTATGCCCGGGG
GCGTCGACGTCGCGTCCCCTGGGCAGGCACGCCCACGCGTCGGCGTACAT
CGAATCCAAGGCGGACGGCGTGAACGCGCTGTTCATCTTCGGGGGCCGAG
AGAACGCGGATGATCTAGCTCCGCTGGGGGATCTCTGGTGACCGACGACA
CCGAGGTGGGTCCCGAGCTTTCTCACACCCAGCACCCCGCTAGCATGAGC
GGCAGCGGCAATCCAGGCAACAGCAGCGGTGTCGGCGGCGAGGATGCGGG
AGAGGACGCAACCGACGGGGGGAGCAGCGAGTCGATCGGCGAGAAGAATA
AGAAGGAGAAGAAGGCGGTATGCCCGGGGGCGTCGACGTCGCGTCCCCTG
GGCAGGCACGCCCACGCGTCGGCGTACATCGAATCCAAGGCGGACGGCGT
GAACGCGCTGTTCATCTTCGGGGGCCGAGAGAACGCGGATGATCTAGCTC
CGCTGGGGGATCTCTGGTGA
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