mRNA_H-canaliculatus_F_contig11646.1450.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11646.1450.1
Unique NamemRNA_H-canaliculatus_F_contig11646.1450.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11646.1450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11646contigH-canaliculatus_F_contig11646:1632..2390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11646.1450.1prot_H-canaliculatus_F_contig11646.1450.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11646 1633..2390 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928856.4481716-CDS-H-canaliculatus_F_contig11646:1632..16851622928856.4481716-CDS-H-canaliculatus_F_contig11646:1632..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 1633..1685 -
1696845590.7180529-CDS-H-canaliculatus_F_contig11646:1632..16851696845590.7180529-CDS-H-canaliculatus_F_contig11646:1632..1685Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 1633..1685 -
1622928856.461264-CDS-H-canaliculatus_F_contig11646:1917..20081622928856.461264-CDS-H-canaliculatus_F_contig11646:1917..2008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 1918..2008 -
1696845590.7271488-CDS-H-canaliculatus_F_contig11646:1917..20081696845590.7271488-CDS-H-canaliculatus_F_contig11646:1917..2008Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 1918..2008 -
1622928856.4716678-CDS-H-canaliculatus_F_contig11646:2276..23901622928856.4716678-CDS-H-canaliculatus_F_contig11646:2276..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 2277..2390 -
1696845590.7391346-CDS-H-canaliculatus_F_contig11646:2276..23901696845590.7391346-CDS-H-canaliculatus_F_contig11646:2276..2390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11646 2277..2390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11646.1450.1

>prot_H-canaliculatus_F_contig11646.1450.1 ID=prot_H-canaliculatus_F_contig11646.1450.1|Name=mRNA_H-canaliculatus_F_contig11646.1450.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=86bp
HTAAATAAPVDQIVMYRGGAEPAAGASRASPDDRRPPQFGPCRPLRLVLD
DSTTPSLPHFAFSLGQPIAMAFGVRCFFWAHWSGSA
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mRNA from alignment at H-canaliculatus_F_contig11646:1632..2390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11646.1450.1 ID=mRNA_H-canaliculatus_F_contig11646.1450.1|Name=mRNA_H-canaliculatus_F_contig11646.1450.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=759bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11646:1632..2390- (Hapterophycus canaliculatus Oshoro5f female)
CACACGGCCGCTGCTACTGCTGCCCCCGTCGACCAGATTGTGATGTACCG
GGGCGGTGCCGAACCAGCAGCTGGTGCCTCGCGTGCCTCCCCGGACGACC
GCCGCCCTCCACAGGTACAGCGCGCGATTTCGGGTACTGGTGTTCGTAGT
TTTATTCCTTTCCCTGTAGGCTGTAGCTGCTCCATGCTGGTAGTGAAATG
CAAAGCGTCTTGCGTGACCGGTTGCTGTCGAGGCATGGTCGAACATCTCC
GATGCTCGTCATCGTGCGTGTCGCTTCGTCCCGGCGTGTTGGAAGCTTGG
CGCCTCGCTGATGGTCTGATCGCCTCGTCCGTTGACTTGGTTCTTGTTCT
CCGCCGACTCCTCCTCCGTGTCCTTTGTACAGTTTGGGCCATGCCGTCCT
CTCCGGCTGGTGCTGGATGACTCTACCACTCCAAGCCTGCCGCACTTTGC
CTTCTCGCTCGGTCAGCCCATCGGTGAGCTGTTCGCAATCGCTTCGGGCG
TTGTCGGTGGTAACGGTATGCAGGGAGGCGTATGCAGGGGCAGCGCAATC
ATGGCATACCAACGAGGTGTGGCTGCTGTGGGCTCCTGCCCCCCTTGATC
GTCCTCTGTGCCGTGTGTGTGGTGACGAGATGATTTTAACTCGATGGCTG
CACGAGTAACGGACTTCTTTCGTGCGCCGTCACTTTCAATATCACTACGC
CGCAGCGATGGCGTTCGGCGTGCGCTGTTTTTTCTGGGCGCACTGGTCGG
GCTCGGCGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11646:1632..2390-

>mRNA_H-canaliculatus_F_contig11646.1450.1 ID=mRNA_H-canaliculatus_F_contig11646.1450.1|Name=mRNA_H-canaliculatus_F_contig11646.1450.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=516bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11646:1632..2390- (Hapterophycus canaliculatus Oshoro5f female)
CACACGGCCGCTGCTACTGCTGCCCCCGTCGACCAGATTGTGATGTACCG
GGGCGGTGCCGAACCAGCAGCTGGTGCCTCGCGTGCCTCCCCGGACGACC
GCCGCCCTCCACAGCACACGGCCGCTGCTACTGCTGCCCCCGTCGACCAG
ATTGTGATGTACCGGGGCGGTGCCGAACCAGCAGCTGGTGCCTCGCGTGC
CTCCCCGGACGACCGCCGCCCTCCACAGTTTGGGCCATGCCGTCCTCTCC
GGCTGGTGCTGGATGACTCTACCACTCCAAGCCTGCCGCACTTTGCCTTC
TCGCTCGGTCAGCCCATCGTTTGGGCCATGCCGTCCTCTCCGGCTGGTGC
TGGATGACTCTACCACTCCAAGCCTGCCGCACTTTGCCTTCTCGCTCGGT
CAGCCCATCGCGATGGCGTTCGGCGTGCGCTGTTTTTTCTGGGCGCACTG
GTCGGGCTCGGCGCGATGGCGTTCGGCGTGCGCTGTTTTTTCTGGGCGCA
CTGGTCGGGCTCGGCG
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