mRNA_H-canaliculatus_F_contig11584.1397.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11584.1397.1
Unique NamemRNA_H-canaliculatus_F_contig11584.1397.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11584.1397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11584contigH-canaliculatus_F_contig11584:61..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11584.1397.1prot_H-canaliculatus_F_contig11584.1397.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11584 77..391 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.4728053-UTR-H-canaliculatus_F_contig11584:60..761622928849.4728053-UTR-H-canaliculatus_F_contig11584:60..76Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11584 61..76 +
1696845587.945647-UTR-H-canaliculatus_F_contig11584:60..761696845587.945647-UTR-H-canaliculatus_F_contig11584:60..76Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11584 61..76 +
1622928849.5083294-UTR-H-canaliculatus_F_contig11584:391..5601622928849.5083294-UTR-H-canaliculatus_F_contig11584:391..560Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11584 392..560 +
1696845587.9652338-UTR-H-canaliculatus_F_contig11584:391..5601696845587.9652338-UTR-H-canaliculatus_F_contig11584:391..560Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11584 392..560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928849.4880404-CDS-H-canaliculatus_F_contig11584:76..3911622928849.4880404-CDS-H-canaliculatus_F_contig11584:76..391Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11584 77..391 +
1696845587.9554653-CDS-H-canaliculatus_F_contig11584:76..3911696845587.9554653-CDS-H-canaliculatus_F_contig11584:76..391Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11584 77..391 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11584.1397.1

>prot_H-canaliculatus_F_contig11584.1397.1 ID=prot_H-canaliculatus_F_contig11584.1397.1|Name=mRNA_H-canaliculatus_F_contig11584.1397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=105bp
MKSGTVTPAARAAGTTLKRRDQTAAPTTPATTARLHTGRRERGRCGGYVA
HSIGASILASGLGTERRLRFVALVEFFCTQEDRQQQMHRLVRFRLCFRRV
DDDA*
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mRNA from alignment at H-canaliculatus_F_contig11584:61..560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11584.1397.1 ID=mRNA_H-canaliculatus_F_contig11584.1397.1|Name=mRNA_H-canaliculatus_F_contig11584.1397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=500bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11584:61..560+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGCCTTCACGGAGGATGAAATCGGGCACAGTAACACCAGCAGCGAGAG
CAGCAGGGACGACTTTGAAGAGGAGGGACCAGACAGCGGCACCTACAACG
CCCGCAACGACGGCGAGACTTCACACCGGACGGCGAGAAAGGGGACGGTG
TGGGGGGTACGTCGCTCATTCGATCGGGGCAAGCATTTTGGCGTCTGGGC
TGGGCACGGAGAGGCGACTACGGTTTGTTGCGCTGGTTGAATTTTTCTGC
ACGCAGGAAGACCGCCAGCAGCAGATGCACCGTTTGGTAAGATTTCGACT
CTGTTTCAGGCGCGTGGATGATGATGCGTGATGCAGATGCTGTGGCGACG
GTCGATGTATTTTTCGTATATTAGCCGCGTTTTCCTTGCGGCGACGTTCG
ATGTGTTCCGGATGTTGTCTGCGTTTTCCCTGCGGCAATGTCCGATGCGC
TCGATTTATTTTTTATTTTATGTGCTGTTCATGTGCACAATCCTGGGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11584:61..560+

>mRNA_H-canaliculatus_F_contig11584.1397.1 ID=mRNA_H-canaliculatus_F_contig11584.1397.1|Name=mRNA_H-canaliculatus_F_contig11584.1397.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=630bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11584:61..560+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAAATCGGGCACAGTAACACCAGCAGCGAGAGCAGCAGGGACGACTTT
GAAGAGGAGGGACCAGACAGCGGCACCTACAACGCCCGCAACGACGGCGA
GACTTCACACCGGACGGCGAGAAAGGGGACGGTGTGGGGGGTACGTCGCT
CATTCGATCGGGGCAAGCATTTTGGCGTCTGGGCTGGGCACGGAGAGGCG
ACTACGGTTTGTTGCGCTGGTTGAATTTTTCTGCACGCAGGAAGACCGCC
AGCAGCAGATGCACCGTTTGGTAAGATTTCGACTCTGTTTCAGGCGCGTG
GATGATGATGCGTGAATGAAATCGGGCACAGTAACACCAGCAGCGAGAGC
AGCAGGGACGACTTTGAAGAGGAGGGACCAGACAGCGGCACCTACAACGC
CCGCAACGACGGCGAGACTTCACACCGGACGGCGAGAAAGGGGACGGTGT
GGGGGGTACGTCGCTCATTCGATCGGGGCAAGCATTTTGGCGTCTGGGCT
GGGCACGGAGAGGCGACTACGGTTTGTTGCGCTGGTTGAATTTTTCTGCA
CGCAGGAAGACCGCCAGCAGCAGATGCACCGTTTGGTAAGATTTCGACTC
TGTTTCAGGCGCGTGGATGATGATGCGTGA
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