mRNA_H-canaliculatus_F_contig1155.1370.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1155.1370.1
Unique NamemRNA_H-canaliculatus_F_contig1155.1370.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1155.1370.1 vs. uniprot
Match: D7G706_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G706_ECTSI)

HSP 1 Score: 199 bits (506), Expect = 6.270e-61
Identity = 123/230 (53.48%), Postives = 145/230 (63.04%), Query Frame = 1 
Query:   88 TRSRTSLPRARAKAAPLPQADRSQGIKGFRRATTASARI-DGS---RGDTHPRSGMFLPQAPYEAHGSNKFYTASSVCTLGRIFSDSNLVQPTWSKVATSPWGEAARVTGGYGERLLNGANSVESPDFMFSKRFGGHVKDYSFKKRPRPFTYNGEAKTAVSCDTPNFFRARHTQIYGTSIKKIHKPRLIKMLLGRQIMAEPEVPETTWGLLGGPPLNWG--ETEGDGLSI 759
            TRS+T  P+ARA+ A LPQ DR++  +G  RATTA +R  D S   RGD   RSG+FLPQ  +EA  ++KFYTAS VCTL RIFSDS+L+QP+W KVATSPWGEAARVTGGYGERLLNGANSVESPDFM SK                                          +YG  I+KI KPRL+KM LG+QI+AEPEVPET    L G PL+WG     G G+S+
Sbjct:    3 TRSQTHWPQARAQTANLPQPDRTRSERGTLRATTARSRARDASSRRRGDA--RSGIFLPQVKFEADENSKFYTASPVCTLSRIFSDSSLIQPSWPKVATSPWGEAARVTGGYGERLLNGANSVESPDFMLSK------------------------------------------VYGRPIEKIDKPRLLKMHLGKQIIAEPEVPETD---LAGGPLDWGGMAVTGSGVSV 185
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1155.1370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G706_ECTSI6.270e-6153.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1155contigH-canaliculatus_F_contig1155:12741..14995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_011550.1
Exons5
Model size759
Cds size759
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1155.1370.1prot_H-canaliculatus_F_contig1155.1370.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1155 12741..14995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928845.4635394-CDS-H-canaliculatus_F_contig1155:12740..129571622928845.4635394-CDS-H-canaliculatus_F_contig1155:12740..12957Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 12741..12957 +
1696845586.4489803-CDS-H-canaliculatus_F_contig1155:12740..129571696845586.4489803-CDS-H-canaliculatus_F_contig1155:12740..12957Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 12741..12957 +
1622928845.502102-CDS-H-canaliculatus_F_contig1155:13258..135121622928845.502102-CDS-H-canaliculatus_F_contig1155:13258..13512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 13259..13512 +
1696845586.4618254-CDS-H-canaliculatus_F_contig1155:13258..135121696845586.4618254-CDS-H-canaliculatus_F_contig1155:13258..13512Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 13259..13512 +
1622928845.5156927-CDS-H-canaliculatus_F_contig1155:14074..142001622928845.5156927-CDS-H-canaliculatus_F_contig1155:14074..14200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14075..14200 +
1696845586.4705539-CDS-H-canaliculatus_F_contig1155:14074..142001696845586.4705539-CDS-H-canaliculatus_F_contig1155:14074..14200Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14075..14200 +
1622928845.5319393-CDS-H-canaliculatus_F_contig1155:14499..145651622928845.5319393-CDS-H-canaliculatus_F_contig1155:14499..14565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14500..14565 +
1696845586.481255-CDS-H-canaliculatus_F_contig1155:14499..145651696845586.481255-CDS-H-canaliculatus_F_contig1155:14499..14565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14500..14565 +
1622928845.5549502-CDS-H-canaliculatus_F_contig1155:14899..149951622928845.5549502-CDS-H-canaliculatus_F_contig1155:14899..14995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14900..14995 +
1696845586.4894645-CDS-H-canaliculatus_F_contig1155:14899..149951696845586.4894645-CDS-H-canaliculatus_F_contig1155:14899..14995Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1155 14900..14995 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1155.1370.1

>prot_H-canaliculatus_F_contig1155.1370.1 ID=prot_H-canaliculatus_F_contig1155.1370.1|Name=mRNA_H-canaliculatus_F_contig1155.1370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=253bp
MNKRRERVGGGQTTIFTAPVSARTFTPLPTRSRTSLPRARAKAAPLPQAD
RSQGIKGFRRATTASARIDGSRGDTHPRSGMFLPQAPYEAHGSNKFYTAS
SVCTLGRIFSDSNLVQPTWSKVATSPWGEAARVTGGYGERLLNGANSVES
PDFMFSKRFGGHVKDYSFKKRPRPFTYNGEAKTAVSCDTPNFFRARHTQI
YGTSIKKIHKPRLIKMLLGRQIMAEPEVPETTWGLLGGPPLNWGETEGDG
LSI
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mRNA from alignment at H-canaliculatus_F_contig1155:12741..14995+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1155.1370.1 ID=mRNA_H-canaliculatus_F_contig1155.1370.1|Name=mRNA_H-canaliculatus_F_contig1155.1370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2255bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1155:12741..14995+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAAACGAAGAGAACGTGTCGGTGGCGGGCAAACAACGATTTTTAC
CGCGCCAGTCTCGGCACGGACGTTTACGCCGCTTCCGACTCGGTCCCGGA
CAAGCTTACCCCGAGCGCGAGCCAAGGCAGCGCCCCTGCCTCAAGCGGAT
AGATCACAAGGCATTAAAGGATTTCGCCGGGCAACGACAGCAAGTGCGAG
GATTGATGGCTCTCGAGGTGGGTACGAGAAGTGGGAAGGCGGCACCGACG
ACTTTTCGTTATCGAACTATACAGTACGCTGTACTGCAGATTGACTTCGT
AAATCGAAAAGACAACACTGCATACAGAGTACTTCAAGTGTGCATTGTAC
AACAATATCAATATTCCTGATCCCAGATGGACACGAATTCTGCTTCCATG
TGCGAGATGCTCTGAACTCTTGCTGTCATCGCGCAACAATCAGGGCGTGT
GGCTTACTTCATACAGTCTATGAACAACCAGTCCTCCACTGACTGCCCCT
GTCTTTCATTTACGGCAGGCGATACGCACCCGAGAAGCGGCATGTTTCTG
CCACAGGCTCCGTACGAAGCGCACGGATCCAACAAGTTCTACACAGCCTC
ATCTGTCTGCACACTCGGAAGAATATTCTCAGACTCCAATCTTGTCCAGC
CTACTTGGTCGAAGGTGGCGACGTCGCCGTGGGGGGAAGCTGCGAGAGTT
ACTGGGGGTTACGGCGAACGACTTCTGAACGGGGCAAACTCGGTGGAGTC
TCCTGACTTTATGTTTAGCAAGGTGGGCAAAAATGCTGTCAATGCCGATG
CGTGCGCCTCGCTTGGTGCGCACGCTCCGCCTTCTCTATCGTGTGATGCA
TGCGGTACGGCGTCCTTTGGCATTTTCTTCGTGGTTTGCTACAAGTATAT
GCTTATCTAAGACATAAGAGTATATATCCTTGTACAATTACTTGTAGATA
GAGGAGCTGGATTTCCTGGAGTCTACGAGGTCATAGACGTCCACGTACTG
TAGTATCGCTTGGCAAGTGAGCGGGATTCAAACTGCAGGACGGAGCGCTC
GCGCCGCTCACTCTGTTCGTCATTTTTCACGCCAAGATTGAGCTCTTCAA
TGCCATGTATGTGTAAATGGCCGACATCCAAGCACTTATTTCATACGCCC
TGCACATGTGCGTCTTCTGAAAGCAATTCCTCCCGAGGTACGTTTGCTCG
GTCGAAGATTGTATTTCAAGGAACAATTATTTCTGCCTTACCAAGAAGAA
AACAAACATCTCGAAGATTTTTCTCCATGGAGGACTTGCCTTTATTATAC
GGAGTTTGATTTTTCCGACGTGCTGCCCGAGCAGAGATTCGGAGGACACG
TCAAGGACTACAGCTTTAAAAAAAGGCCAAGACCCTTCACCTACAACGGT
GAAGCCAAAACGGCTGTCTCTTGCGACACCCCCAACTTCTTTCGCGCCCG
CCACACGCAGGTTTGGCGAACAGCACTACTTACATATGGTTGAACTTGAC
AGTAAAAATCTTCCGCACTTACCCATCATGTTGTGGGTCCTGCCTGATTT
TGGGATGAAATCAAATCCATCGTCGCTGCGTCAACCGCTGTTCAATATAA
AAAGCTGAACGCGTGTAAGTTCCTCGAGGTATGAAAGCTTCACAAACAAC
AGAGACTTGGTTGGGCATCGTTCCTGTGAAAAACTTTAGAGAGTTCAACG
CTTTTCGCCCACTGTTCAAAGTCTGCTTCTAGACTACTTAGTTCTCGGTG
TCGCCACAGATTTACGGGACGTCTATCAAGAAGATCCACAAGCCTCGTCT
GATCAAGATGCTTTTGGGCAGGCAGGTGTGGTGCATGGCCACACGTACGT
GCTGCTACACGTCGCGATGGACTCTGTTCGAAAAATAAGTCGGTCAGGGT
CTCGTGGCCAAACGTTGGAACGACATTGAATCATCATACCTGAGCAGAGG
GCGTTTCAACGGATGGATGGATGATGTTGTGATGCGGTCGTGCTGAGTCC
GATTTGCCATCCACGTGGAATTAACTTTGAGGCCTCTTCCTGGTAGAGGT
GAACGAATTTCATGGTGCTGAGGGGGCGATGGAATTCTGTTTCGGTTCTG
TTCATCGCTCCATGGGCCTTCTGTCGCACTCCCTCTTGCTCCGAATCGTG
TCACCACAGATTATGGCGGAACCTGAGGTGCCGGAGACAACGTGGGGCCT
TCTGGGGGGACCTCCTCTGAACTGGGGGGAAACAGAAGGGGATGGTTTAA
GCATA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1155:12741..14995+

>mRNA_H-canaliculatus_F_contig1155.1370.1 ID=mRNA_H-canaliculatus_F_contig1155.1370.1|Name=mRNA_H-canaliculatus_F_contig1155.1370.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1518bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1155:12741..14995+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAACAAACGAAGAGAACGTGTCGGTGGCGGGCAAACAACGATTTTTAC
CGCGCCAGTCTCGGCACGGACGTTTACGCCGCTTCCGACTCGGTCCCGGA
CAAGCTTACCCCGAGCGCGAGCCAAGGCAGCGCCCCTGCCTCAAGCGGAT
AGATCACAAGGCATTAAAGGATTTCGCCGGGCAACGACAGCAAGTGCGAG
GATTGATGGCTCTCGAGATGAACAAACGAAGAGAACGTGTCGGTGGCGGG
CAAACAACGATTTTTACCGCGCCAGTCTCGGCACGGACGTTTACGCCGCT
TCCGACTCGGTCCCGGACAAGCTTACCCCGAGCGCGAGCCAAGGCAGCGC
CCCTGCCTCAAGCGGATAGATCACAAGGCATTAAAGGATTTCGCCGGGCA
ACGACAGCAAGTGCGAGGATTGATGGCTCTCGAGGCGATACGCACCCGAG
AAGCGGCATGTTTCTGCCACAGGCTCCGTACGAAGCGCACGGATCCAACA
AGTTCTACACAGCCTCATCTGTCTGCACACTCGGAAGAATATTCTCAGAC
TCCAATCTTGTCCAGCCTACTTGGTCGAAGGTGGCGACGTCGCCGTGGGG
GGAAGCTGCGAGAGTTACTGGGGGTTACGGCGAACGACTTCTGAACGGGG
CAAACTCGGTGGAGTCTCCTGACTTTATGTTTAGCAAGGCGATACGCACC
CGAGAAGCGGCATGTTTCTGCCACAGGCTCCGTACGAAGCGCACGGATCC
AACAAGTTCTACACAGCCTCATCTGTCTGCACACTCGGAAGAATATTCTC
AGACTCCAATCTTGTCCAGCCTACTTGGTCGAAGGTGGCGACGTCGCCGT
GGGGGGAAGCTGCGAGAGTTACTGGGGGTTACGGCGAACGACTTCTGAAC
GGGGCAAACTCGGTGGAGTCTCCTGACTTTATGTTTAGCAAGAGATTCGG
AGGACACGTCAAGGACTACAGCTTTAAAAAAAGGCCAAGACCCTTCACCT
ACAACGGTGAAGCCAAAACGGCTGTCTCTTGCGACACCCCCAACTTCTTT
CGCGCCCGCCACACGCAGAGATTCGGAGGACACGTCAAGGACTACAGCTT
TAAAAAAAGGCCAAGACCCTTCACCTACAACGGTGAAGCCAAAACGGCTG
TCTCTTGCGACACCCCCAACTTCTTTCGCGCCCGCCACACGCAGATTTAC
GGGACGTCTATCAAGAAGATCCACAAGCCTCGTCTGATCAAGATGCTTTT
GGGCAGGCAGATTTACGGGACGTCTATCAAGAAGATCCACAAGCCTCGTC
TGATCAAGATGCTTTTGGGCAGGCAGATTATGGCGGAACCTGAGGTGCCG
GAGACAACGTGGGGCCTTCTGGGGGGACCTCCTCTGAACTGGGGGGAAAC
AGAAGGGGATGGTTTAAGCATAATTATGGCGGAACCTGAGGTGCCGGAGA
CAACGTGGGGCCTTCTGGGGGGACCTCCTCTGAACTGGGGGGAAACAGAA
GGGGATGGTTTAAGCATA
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